Examples with org.hl7.fhir.r5.model org.hl7.fhir.r5.model used on opensource projects

Example 31 with org.hl7.fhir.r5.model

use of org.hl7.fhir.r5.model in project kindling by HL7.

the class DefinitionsUsageTracker method usage.

private void usage(org.hl7.fhir.r5.elementmodel.Element instance, ElementDefn definition, String path) throws Exception {
    definition.setCoveredByExample(true);
    for (Element c : instance.getChildren()) {
        String p = c.getProperty().getDefinition().getPath();
        ElementDefn ed = definitions.getElementByPath(p.split("\\."), "example usage", true);
        if (ed != null)
            usage(c, ed, path + "." + c.getName());
    // else if (!c.getName().equals("extension"))
    // System.out.println("error finding "+c.getName()+" at "+path);
    }
}

Example 32 with org.hl7.fhir.r5.model

use of org.hl7.fhir.r5.model in project kindling by HL7.

the class ExampleInspector method checkJsonLd.

private void checkJsonLd() throws IOException {
    String s1 = "{\r\n" + "  \"@type\": \"fhir:Claim\",\r\n" + "  \"@id\": \"http://hl7.org/fhir/Claim/760152\",\r\n" + "  \"decimal\": 123.45,\r\n" + "  \"@context\": {\r\n" + "    \"fhir\": \"http://hl7.org/fhir/\",\r\n" + "    \"xsd\": \"http://www.w3.org/2001/XMLSchema#\",\r\n" + "    \"decimal\": {\r\n" + "      \"@id\": \"fhir:value\",\r\n" + "      \"@type\": \"xsd:decimal\"\r\n" + "    }\r\n" + "  }\r\n" + "}\r\n";
    String s2 = "{\r\n" + "  \"@type\": \"fhir:Claim\",\r\n" + "  \"@id\": \"http://hl7.org/fhir/Claim/760152\",\r\n" + "  \"decimal\": \"123.45\",\r\n" + "  \"@context\": {\r\n" + "    \"fhir\": \"http://hl7.org/fhir/\",\r\n" + "    \"xsd\": \"http://www.w3.org/2001/XMLSchema#\",\r\n" + "    \"decimal\": {\r\n" + "      \"@id\": \"fhir:value\",\r\n" + "      \"@type\": \"xsd:decimal\"\r\n" + "    }\r\n" + "  }\r\n" + "}\r\n";
    Model m1 = ModelFactory.createDefaultModel();
    Model m2 = ModelFactory.createDefaultModel();
    m1.read(new StringReader(s1), null, "JSON-LD");
    m2.read(new StringReader(s2), null, "JSON-LD");
    List<String> diffs = new ModelComparer().setModel1(m1, "j1").setModel2(m2, "j2").compare();
    if (!diffs.isEmpty()) {
        System.out.println("not isomorphic");
        for (String s : diffs) {
            System.out.println("  " + s);
        }
    }
}

Example 33 with org.hl7.fhir.r5.model

use of org.hl7.fhir.r5.model in project kindling by HL7.

the class ExampleInspector method fetch.

@Override
public Element fetch(IResourceValidator validator, Object appContext, String url) throws IOException, FHIRException {
    String[] parts = url.split("\\/");
    if (parts.length == 2 && definitions.hasResource(parts[0])) {
        ResourceDefn r = definitions.getResourceByName(parts[0]);
        for (Example e : r.getExamples()) {
            if (e.getElement() == null && e.hasXml()) {
                e.setElement(new org.hl7.fhir.r5.elementmodel.XmlParser(context).parse(e.getXml()));
                if (e.getElement().getProperty().getStructure().getBaseDefinition().contains("MetadataResource")) {
                    String urle = e.getElement().getChildValue("url");
                    String v = e.getElement().getChildValue("url");
                    if (urle != null && urle.startsWith("http://hl7.org/fhir") && !version.toCode().equals(v)) {
                        e.getElement().setChildValue("version", version.toCode());
                    }
                }
            }
            if (e.getElement() != null) {
                if (e.getElement().fhirType().equals("Bundle")) {
                    for (Base b : e.getElement().listChildrenByName("entry")) {
                        if (b.getChildByName("resource").hasValues()) {
                            Element res = (Element) b.getChildByName("resource").getValues().get(0);
                            if (res.fhirType().equals(parts[0]) && parts[1].equals(res.getChildValue("id"))) {
                                return res;
                            }
                        }
                    }
                } else if (e.getElement().fhirType().equals(parts[0]) && e.getId().equals(parts[1])) {
                    return e.getElement();
                }
            }
        }
        try {
            if (parts[0].equals("StructureDefinition"))
                return new ObjectConverter(context).convert(context.fetchResourceWithException(StructureDefinition.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
            if (parts[0].equals("OperationDefinition"))
                return new ObjectConverter(context).convert(context.fetchResourceWithException(OperationDefinition.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
            if (parts[0].equals("SearchParameter"))
                return new ObjectConverter(context).convert(context.fetchResourceWithException(SearchParameter.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
            if (parts[0].equals("ValueSet"))
                return new ObjectConverter(context).convert(context.fetchResourceWithException(ValueSet.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
            if (parts[0].equals("CodeSystem"))
                return new ObjectConverter(context).convert(context.fetchResourceWithException(CodeSystem.class, "http://hl7.org/fhir/" + parts[0] + "/" + parts[1]));
        } catch (Exception e) {
            return null;
        }
        return null;
    } else
        return null;
}

Example 34 with org.hl7.fhir.r5.model

use of org.hl7.fhir.r5.model in project kindling by HL7.

the class ExampleInspector method validateRDF.

private void validateRDF(String fttl, String fjld, String rt) throws FileNotFoundException, IOException {
    if (VALIDATE_RDF && new File(fjld).exists()) {
        FileInputStream f = new FileInputStream(fjld);
        int size = f.available();
        f.close();
        if (size > 1000000)
            return;
        // replace @context with the contents of the right context file
        JsonObject json = (JsonObject) new com.google.gson.JsonParser().parse(TextFile.fileToString(fjld));
        json.remove("@context");
        json.add("@context", jsonLdDefns.get("@context"));
        Gson gson = new GsonBuilder().setPrettyPrinting().create();
        String jcnt = gson.toJson(json);
        // TextFile.stringToFile(jcnt, "c:\\temp\\jsonld\\"+rt+".jsonld");
        // parse to a model
        Model mj = ModelFactory.createDefaultModel();
        mj.read(new StringReader(jcnt), null, "JSON-LD");
        // read turtle file into Jena
        Model mt = RDFDataMgr.loadModel(fttl);
        // use ShEx to validate turtle file - TODO
        shex.validate(mt);
    // List<String> diffs = new ModelComparer().setModel1(mt, "ttl").setModel2(mj, "json").compare();
    // if (!diffs.isEmpty()) {
    // System.out.println("not isomorphic");
    // for (String s : diffs) {
    // System.out.println("  "+s);
    // }
    // RDFDataMgr.write(new FileOutputStream("c:\\temp\\json.nt"), mj, RDFFormat.NTRIPLES_UTF8);
    // RDFDataMgr.write(new FileOutputStream("c:\\temp\\ttl.nt"), mt, RDFFormat.NTRIPLES_UTF8);
    // }
    }
}

Example 35 with org.hl7.fhir.r5.model

use of org.hl7.fhir.r5.model in project kindling by HL7.

the class SpecNPMPackageGenerator method makeResourceList5.

private List<ResourceEntry> makeResourceList5(Map<String, byte[]> files, String version, List<ResourceEntry> res) throws FHIRFormatError, IOException {
    for (String k : files.keySet()) {
        if (k.endsWith(".xml")) {
            Bundle b = (Bundle) new org.hl7.fhir.r5.formats.XmlParser().parse(files.get(k));
            for (org.hl7.fhir.r5.model.Bundle.BundleEntryComponent be : b.getEntry()) {
                if (be.hasResource()) {
                    ResourceEntry e = new ResourceEntry();
                    e.type = be.getResource().fhirType();
                    e.id = be.getResource().getId();
                    e.json = new org.hl7.fhir.r5.formats.JsonParser().composeBytes(be.getResource());
                    e.xml = new org.hl7.fhir.r5.formats.XmlParser().composeBytes(be.getResource());
                    e.conf = true;
                    if (be.getResource() instanceof org.hl7.fhir.r5.model.CanonicalResource)
                        e.canonical = ((org.hl7.fhir.r5.model.CanonicalResource) be.getResource()).getUrl();
                    res.add(e);
                }
            }
        }
    }
    return null;
}