Examples with org.hl7.fhir.r5.model org.hl7.fhir.r5.model used on opensource projects

Example 36 with org.hl7.fhir.r5.model

use of org.hl7.fhir.r5.model in project kindling by HL7.

the class DSTU3ValidationConvertor method convert.

public void convert(String bundleSource, String bundleTarget) throws Exception {
    System.out.println("Convert " + bundleSource);
    try {
        source = (Bundle) new XmlParser().parse(new FileInputStream(bundleSource));
        org.hl7.fhir.dstu3.model.Bundle target = Bundle30_50.convertBundle(source);
        new org.hl7.fhir.dstu3.formats.XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(bundleTarget), target);
    } catch (Exception e) {
        throw new Exception(e);
    }
}

Example 37 with org.hl7.fhir.r5.model

use of org.hl7.fhir.r5.model in project kindling by HL7.

the class SourceParser method loadCompositeType.

private String loadCompositeType(String n, Map<String, org.hl7.fhir.definitions.model.TypeDefn> map, String fmm, boolean isAbstract) throws Exception {
    TypeParser tp = new TypeParser(version.toString());
    List<TypeRef> ts = tp.parse(n, false, null, context, true);
    definitions.getKnownTypes().addAll(ts);
    StandardsStatus status = loadStatus(n);
    String nv = loadNormativeVersion(n);
    try {
        TypeRef t = ts.get(0);
        File csv = new CSFile(dtDir + t.getName().toLowerCase() + ".xml");
        if (csv.exists()) {
            OldSpreadsheetParser p = new OldSpreadsheetParser("core", new CSFileInputStream(csv), csv.getName(), csv.getAbsolutePath(), definitions, srcDir, logger, registry, version, context, genDate, isAbstract, page, true, ini, wg("fhir"), definitions.getProfileIds(), fpUsages, page.getConceptMaps(), exceptionIfExcelNotNormalised, page.packageInfo(), page.getRc());
            org.hl7.fhir.definitions.model.TypeDefn el = p.parseCompositeType();
            el.setFmmLevel(fmm);
            el.setStandardsStatus(status);
            el.setNormativeVersion(nv);
            map.put(t.getName(), el);
            genTypeProfile(el);
            errors.addAll(p.getErrors());
            return el.getName();
        } else {
            String p = ini.getStringProperty("types", n);
            csv = new CSFile(dtDir + p.toLowerCase() + ".xml");
            if (!csv.exists())
                throw new Exception("unable to find a definition for " + n + " in " + p);
            XLSXmlParser xls = new XLSXmlParser(new CSFileInputStream(csv), csv.getAbsolutePath());
            new XLSXmlNormaliser(csv.getAbsolutePath(), exceptionIfExcelNotNormalised).go();
            Sheet sheet = xls.getSheets().get("Restrictions");
            boolean found = false;
            for (int i = 0; i < sheet.rows.size(); i++) {
                if (sheet.getColumn(i, "Name").equals(n)) {
                    found = true;
                    Invariant inv = new Invariant();
                    inv.setId(n);
                    inv.setEnglish(sheet.getColumn(i, "Rules"));
                    inv.setOcl(sheet.getColumn(i, "OCL"));
                    inv.setXpath(sheet.getColumn(i, "XPath"));
                    inv.setExpression(sheet.getColumn(i, "Expression"));
                    inv.setExplanation(sheet.getColumn(i, "Explanation"));
                    inv.setTurtle(sheet.getColumn(i, "RDF"));
                    ProfiledType pt = new ProfiledType();
                    pt.setDefinition(sheet.getColumn(i, "Definition"));
                    pt.setDescription(sheet.getColumn(i, "Rules"));
                    String structure = sheet.getColumn(i, "Structure");
                    if (!Utilities.noString(structure)) {
                        String[] parts = structure.split("\\;");
                        for (String pp : parts) {
                            String[] words = pp.split("\\=");
                            pt.getRules().put(words[0], words[1]);
                        }
                    }
                    pt.setName(n);
                    pt.setBaseType(p);
                    pt.setInvariant(inv);
                    definitions.getConstraints().put(n, pt);
                }
            }
            if (!found)
                throw new Exception("Unable to find definition for " + n);
            return n;
        }
    } catch (Exception e) {
        throw new Exception("Unable to load " + n + ": " + e.getMessage(), e);
    }
}

Example 38 with org.hl7.fhir.r5.model

use of org.hl7.fhir.r5.model in project kindling by HL7.

the class SourceParser method genTypeProfile.

private void genTypeProfile(org.hl7.fhir.definitions.model.TypeDefn t) throws Exception {
    StructureDefinition profile;
    try {
        profile = new ProfileGenerator(definitions, context, page, genDate, version, null, fpUsages, page.getFolders().rootDir, page.getUml(), page.getRc()).generate(t);
        t.setProfile(profile);
        DataTypeTableGenerator dtg = new DataTypeTableGenerator(dstDir, page, t.getName(), true, version);
        t.getProfile().getText().setDiv(new XhtmlNode(NodeType.Element, "div"));
        t.getProfile().getText().getDiv().getChildNodes().add(dtg.generate(t, null, false));
        if (context.hasResource(StructureDefinition.class, t.getProfile().getUrl()))
            throw new Exception("Duplicate Profile " + t.getProfile().getUrl());
        context.cacheResource(t.getProfile());
    } catch (Exception e) {
        throw new Exception("Error generating profile for '" + t.getName() + "': " + e.getMessage(), e);
    }
}

Example 39 with org.hl7.fhir.r5.model

use of org.hl7.fhir.r5.model in project kindling by HL7.

the class ImplementationGuideDefn method genToc.

public TableModel genToc(HierarchicalTableGenerator gen, String id) throws FHIRException {
    TableModel model = gen.new TableModel(id, true);
    model.getTitles().add(gen.new Title(null, model.getDocoRef(), "Table Of Contents", null, null, 0));
    addPage(gen, model.getRows(), ig.getDefinition().getPage());
    return model;
}

Example 40 with org.hl7.fhir.r5.model

use of org.hl7.fhir.r5.model in project kindling by HL7.

the class ProfileGenerator method generateLogicalModel.

public StructureDefinition generateLogicalModel(ImplementationGuideDefn igd, ResourceDefn r) throws Exception {
    StructureDefinition p = new StructureDefinition();
    p.setId(r.getRoot().getName());
    p.setUrl("http://hl7.org/fhir/StructureDefinition/" + r.getRoot().getName());
    p.setKind(StructureDefinitionKind.LOGICAL);
    p.setAbstract(false);
    p.setUserData("filename", r.getName().toLowerCase());
    p.setUserData("path", igd.getPrefix() + r.getName().toLowerCase() + ".html");
    p.setTitle(r.getName());
    p.setFhirVersion(version);
    p.setVersion(version.toCode());
    p.setType(r.getRoot().getName());
    ToolingExtensions.setStandardsStatus(p, r.getStatus(), null);
    ToolResourceUtilities.updateUsage(p, igd.getCode());
    p.setName(r.getRoot().getName());
    p.setPublisher("Health Level Seven International" + (r.getWg() == null ? " " + igd.getCommittee() : " (" + r.getWg().getName() + ")"));
    p.addContact().getTelecom().add(Factory.newContactPoint(ContactPointSystem.URL, "http://hl7.org/fhir"));
    if (r.getWg() != null) {
        p.addContact().getTelecom().add(Factory.newContactPoint(ContactPointSystem.URL, r.getWg().getUrl()));
        ToolingExtensions.setCodeExtension(p, ToolingExtensions.EXT_WORKGROUP, r.getWg().getCode());
    }
    p.setDescription("Logical Model: " + r.getDefinition());
    p.setPurpose(r.getRoot().getRequirements());
    if (!p.hasPurpose())
        p.setPurpose(r.getRoot().getRequirements());
    p.setDate(genDate.getTime());
    // DSTU
    p.setStatus(PublicationStatus.fromCode("draft"));
    Set<String> containedSlices = new HashSet<String>();
    // first, the differential
    p.setSnapshot(new StructureDefinitionSnapshotComponent());
    defineElement(null, p, p.getSnapshot().getElement(), r.getRoot(), r.getRoot().getName(), containedSlices, new ArrayList<ProfileGenerator.SliceHandle>(), SnapShotMode.None, true, "Element", "Element", true);
    addElementConstraintToSnapshot(p);
    XhtmlNode div = new XhtmlNode(NodeType.Element, "div");
    div.addText("to do");
    p.setText(new Narrative());
    p.getText().setStatus(NarrativeStatus.GENERATED);
    p.getText().setDiv(div);
    return p;
}