Examples with ResourceWrapper org.hl7.fhir.r5.renderers.utils.BaseWrappers.ResourceWrapper used on opensource projects

Example 26 with ResourceWrapper

use of org.hl7.fhir.r5.renderers.utils.BaseWrappers.ResourceWrapper in project org.hl7.fhir.core by hapifhir.

the class DiagnosticReportRenderer method addObservationToTable.

private void addObservationToTable(XhtmlNode tr, ResourceWrapper obs, int i, String ref, boolean refRange, boolean flags, boolean note, boolean effectiveTime, boolean issued, DataType eff, DataType iss) throws UnsupportedEncodingException, FHIRException, IOException {
    // code (+bodysite)
    XhtmlNode td = tr.td();
    PropertyWrapper pw = getProperty(obs, "code");
    if (valued(pw)) {
        render(td.ah(ref), pw.value());
    }
    pw = getProperty(obs, "bodySite");
    if (valued(pw)) {
        td.tx(" (");
        render(td, pw.value());
        td.tx(")");
    }
    // value / dataAbsentReason (in red)
    td = tr.td();
    pw = getProperty(obs, "value[x]");
    if (valued(pw)) {
        render(td, pw.value());
    } else {
        pw = getProperty(obs, "dataAbsentReason");
        if (valued(pw)) {
            XhtmlNode span = td.span("color: maroon", "Error");
            span.tx("Error: ");
            render(span.b(), pw.value());
        }
    }
    if (refRange) {
        // reference range
        td = tr.td();
        pw = getProperty(obs, "referenceRange");
        if (valued(pw)) {
            boolean first = true;
            for (BaseWrapper v : pw.getValues()) {
                if (first)
                    first = false;
                else
                    td.br();
                PropertyWrapper pwr = getProperty(v, "type");
                if (valued(pwr)) {
                    render(td, pwr.value());
                    td.tx(": ");
                }
                PropertyWrapper pwt = getProperty(v, "text");
                if (valued(pwt)) {
                    render(td, pwt.value());
                } else {
                    PropertyWrapper pwl = getProperty(v, "low");
                    PropertyWrapper pwh = getProperty(v, "high");
                    if (valued(pwl) && valued(pwh)) {
                        render(td, pwl.value());
                        td.tx(" - ");
                        render(td, pwh.value());
                    } else if (valued(pwl)) {
                        td.tx(">");
                        render(td, pwl.value());
                    } else if (valued(pwh)) {
                        td.tx("<");
                        render(td, pwh.value());
                    } else {
                        td.tx("??");
                    }
                }
                pwr = getProperty(v, "appliesTo");
                PropertyWrapper pwrA = getProperty(v, "age");
                if (valued(pwr) || valued(pwrA)) {
                    boolean firstA = true;
                    td.tx(" for ");
                    if (valued(pwr)) {
                        for (BaseWrapper va : pwr.getValues()) {
                            if (firstA)
                                firstA = false;
                            else
                                td.tx(", ");
                            render(td, va);
                        }
                    }
                    if (valued(pwrA)) {
                        if (firstA)
                            firstA = false;
                        else
                            td.tx(", ");
                        td.tx("Age ");
                        render(td, pwrA.value());
                    }
                }
            }
        }
    }
    if (flags) {
        // flags (status other than F, interpretation, )
        td = tr.td();
        boolean first = true;
        pw = getProperty(obs, "status");
        if (valued(pw)) {
            if (!pw.value().getBase().primitiveValue().equals("final")) {
                if (first)
                    first = false;
                else
                    td.br();
                render(td, pw.value());
            }
        }
        pw = getProperty(obs, "interpretation");
        if (valued(pw)) {
            for (BaseWrapper v : pw.getValues()) {
                if (first)
                    first = false;
                else
                    td.br();
                render(td, v);
            }
        }
    }
    if (note) {
        td = tr.td();
        pw = getProperty(obs, "note");
        if (valued(pw)) {
            render(td, pw.value());
        }
    }
    if (effectiveTime) {
        // effective if different to DR
        td = tr.td();
        pw = getProperty(obs, "effective[x]");
        if (valued(pw)) {
            if (!Base.compareDeep(pw.value().getBase(), eff, true)) {
                render(td, pw.value());
            }
        }
    }
    if (issued) {
        // issued if different to DR
        td = tr.td();
        pw = getProperty(obs, "issued");
        if (valued(pw)) {
            if (!Base.compareDeep(pw.value().getBase(), eff, true)) {
                render(td, pw.value());
            }
        }
    }
}

Example 27 with ResourceWrapper

use of org.hl7.fhir.r5.renderers.utils.BaseWrappers.ResourceWrapper in project org.hl7.fhir.core by hapifhir.

the class DiagnosticReportRenderer method fetchObservations.

private List<ObservationNode> fetchObservations(List<BaseWrapper> list, ResourceWrapper rw) throws UnsupportedEncodingException, FHIRException, IOException {
    List<ObservationNode> res = new ArrayList<ObservationNode>();
    for (BaseWrapper b : list) {
        if (b.has("reference")) {
            ObservationNode obs = new ObservationNode();
            obs.ref = b.get("reference").primitiveValue();
            obs.obs = resolveReference(rw, obs.ref);
            if (obs.obs != null && obs.obs.getResource() != null) {
                PropertyWrapper t = getProperty(obs.obs.getResource(), "contained");
                if (t != null && t.hasValues()) {
                    obs.contained = fetchObservations(t.getValues(), rw);
                }
            }
            res.add(obs);
        }
    }
    return res;
}

Example 28 with ResourceWrapper

use of org.hl7.fhir.r5.renderers.utils.BaseWrappers.ResourceWrapper in project org.hl7.fhir.core by hapifhir.

the class LibraryRenderer method render.

public boolean render(XhtmlNode x, ResourceWrapper lib) throws FHIRFormatError, DefinitionException, IOException {
    PropertyWrapper authors = lib.getChildByName("author");
    PropertyWrapper editors = lib.getChildByName("editor");
    PropertyWrapper reviewers = lib.getChildByName("reviewer");
    PropertyWrapper endorsers = lib.getChildByName("endorser");
    if ((authors != null && authors.hasValues()) || (editors != null && editors.hasValues()) || (reviewers != null && reviewers.hasValues()) || (endorsers != null && endorsers.hasValues())) {
        boolean email = hasCT(authors, "email") || hasCT(editors, "email") || hasCT(reviewers, "email") || hasCT(endorsers, "email");
        boolean phone = hasCT(authors, "phone") || hasCT(editors, "phone") || hasCT(reviewers, "phone") || hasCT(endorsers, "phone");
        boolean url = hasCT(authors, "url") || hasCT(editors, "url") || hasCT(reviewers, "url") || hasCT(endorsers, "url");
        x.h2().tx("Participants");
        XhtmlNode t = x.table("grid");
        if (authors != null) {
            for (BaseWrapper cd : authors.getValues()) {
                participantRow(t, "Author", cd, email, phone, url);
            }
        }
        if (authors != null) {
            for (BaseWrapper cd : editors.getValues()) {
                participantRow(t, "Editor", cd, email, phone, url);
            }
        }
        if (authors != null) {
            for (BaseWrapper cd : reviewers.getValues()) {
                participantRow(t, "Reviewer", cd, email, phone, url);
            }
        }
        if (authors != null) {
            for (BaseWrapper cd : endorsers.getValues()) {
                participantRow(t, "Endorser", cd, email, phone, url);
            }
        }
    }
    PropertyWrapper artifacts = lib.getChildByName("relatedArtifact");
    if (artifacts != null && artifacts.hasValues()) {
        x.h2().tx("Related Artifacts");
        XhtmlNode t = x.table("grid");
        boolean label = false;
        boolean display = false;
        boolean citation = false;
        for (BaseWrapper ra : artifacts.getValues()) {
            label = label || ra.has("label");
            display = display || ra.has("display");
            citation = citation || ra.has("citation");
        }
        for (BaseWrapper ra : artifacts.getValues()) {
            renderArtifact(t, ra, lib, label, display, citation);
        }
    }
    PropertyWrapper parameters = lib.getChildByName("parameter");
    if (parameters != null && parameters.hasValues()) {
        x.h2().tx("Parameters");
        XhtmlNode t = x.table("grid");
        boolean doco = false;
        for (BaseWrapper p : parameters.getValues()) {
            doco = doco || p.has("documentation");
        }
        for (BaseWrapper p : parameters.getValues()) {
            renderParameter(t, p, doco);
        }
    }
    PropertyWrapper dataRequirements = lib.getChildByName("dataRequirement");
    if (dataRequirements != null && dataRequirements.hasValues()) {
        x.h2().tx("Data Requirements");
        for (BaseWrapper p : dataRequirements.getValues()) {
            renderDataRequirement(x, (DataRequirement) p.getBase());
        }
    }
    PropertyWrapper contents = lib.getChildByName("content");
    if (contents != null) {
        x.h2().tx("Contents");
        boolean isCql = false;
        int counter = 0;
        for (BaseWrapper p : contents.getValues()) {
            Attachment att = (Attachment) p.getBase();
            renderAttachment(x, att, isCql, counter, lib.getId());
            isCql = isCql || (att.hasContentType() && att.getContentType().startsWith("text/cql"));
            counter++;
        }
    }
    return false;
}

Example 29 with ResourceWrapper

use of org.hl7.fhir.r5.renderers.utils.BaseWrappers.ResourceWrapper in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method addObservationToTable.

private void addObservationToTable(XhtmlNode tr, ResourceWrapper obs, int i) {
    // TODO Auto-generated method stub
    // code (+bodysite)
    XhtmlNode td = tr.td();
    PropertyWrapper pw = getProperty(obs, "result");
    if (valued(pw)) {
        displayCodeableConcept(td, pw.value());
    }
    pw = getProperty(obs, "bodySite");
    if (valued(pw)) {
        td.tx(" (");
        displayCodeableConcept(td, pw.value());
        td.tx(")");
    }
    // value / dataAbsentReason (in red)
    td = tr.td();
    pw = getProperty(obs, "value[x]");
    if (valued(pw)) {
        if (pw.getTypeCode().equals("CodeableConcept"))
            displayCodeableConcept(td, pw.value());
        else if (pw.getTypeCode().equals("string"))
            displayText(td, pw.value());
        else
            td.addText(pw.getTypeCode() + " not rendered yet");
    }
    // units
    td = tr.td();
    td.tx("to do");
    // reference range
    td = tr.td();
    td.tx("to do");
    // flags (status other than F, interpretation, )
    td = tr.td();
    td.tx("to do");
    // issued if different to DR
    td = tr.td();
    td.tx("to do");
}

Example 30 with ResourceWrapper

use of org.hl7.fhir.r5.renderers.utils.BaseWrappers.ResourceWrapper in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method renderLeaf.

private void renderLeaf(ResourceWrapper res, BaseWrapper ew, ElementDefinition defn, XhtmlNode x, boolean title, boolean showCodeDetails, Map<String, String> displayHints, String path) throws FHIRException, UnsupportedEncodingException, IOException {
    if (ew == null)
        return;
    Base e = ew.getBase();
    if (e instanceof StringType)
        x.addText(((StringType) e).getValue());
    else if (e instanceof CodeType)
        x.addText(((CodeType) e).getValue());
    else if (e instanceof IdType)
        x.addText(((IdType) e).getValue());
    else if (e instanceof Extension)
        return;
    else if (e instanceof InstantType)
        x.addText(((InstantType) e).toHumanDisplay());
    else if (e instanceof DateTimeType)
        x.addText(((DateTimeType) e).toHumanDisplay());
    else if (e instanceof Base64BinaryType)
        x.addText(new Base64().encodeAsString(((Base64BinaryType) e).getValue()));
    else if (e instanceof org.hl7.fhir.dstu3.model.DateType)
        x.addText(((org.hl7.fhir.dstu3.model.DateType) e).toHumanDisplay());
    else if (e instanceof Enumeration) {
        Object ev = ((Enumeration<?>) e).getValue();
        // todo: look up a display name if there is one
        x.addText(ev == null ? "" : ev.toString());
    } else if (e instanceof BooleanType)
        x.addText(((BooleanType) e).getValue().toString());
    else if (e instanceof CodeableConcept) {
        renderCodeableConcept((CodeableConcept) e, x, showCodeDetails);
    } else if (e instanceof Coding) {
        renderCoding((Coding) e, x, showCodeDetails);
    } else if (e instanceof Annotation) {
        renderAnnotation((Annotation) e, x);
    } else if (e instanceof Identifier) {
        renderIdentifier((Identifier) e, x);
    } else if (e instanceof org.hl7.fhir.dstu3.model.IntegerType) {
        x.addText(Integer.toString(((org.hl7.fhir.dstu3.model.IntegerType) e).getValue()));
    } else if (e instanceof org.hl7.fhir.dstu3.model.DecimalType) {
        x.addText(((org.hl7.fhir.dstu3.model.DecimalType) e).getValue().toString());
    } else if (e instanceof HumanName) {
        renderHumanName((HumanName) e, x);
    } else if (e instanceof SampledData) {
        renderSampledData((SampledData) e, x);
    } else if (e instanceof Address) {
        renderAddress((Address) e, x);
    } else if (e instanceof ContactPoint) {
        renderContactPoint((ContactPoint) e, x);
    } else if (e instanceof UriType) {
        renderUri((UriType) e, x);
    } else if (e instanceof Timing) {
        renderTiming((Timing) e, x);
    } else if (e instanceof Range) {
        renderRange((Range) e, x);
    } else if (e instanceof Quantity) {
        renderQuantity((Quantity) e, x, showCodeDetails);
    } else if (e instanceof Ratio) {
        renderQuantity(((Ratio) e).getNumerator(), x, showCodeDetails);
        x.tx("/");
        renderQuantity(((Ratio) e).getDenominator(), x, showCodeDetails);
    } else if (e instanceof Period) {
        Period p = (Period) e;
        x.addText(!p.hasStart() ? "??" : p.getStartElement().toHumanDisplay());
        x.tx(" --> ");
        x.addText(!p.hasEnd() ? "(ongoing)" : p.getEndElement().toHumanDisplay());
    } else if (e instanceof Reference) {
        Reference r = (Reference) e;
        XhtmlNode c = x;
        ResourceWithReference tr = null;
        if (r.hasReferenceElement()) {
            tr = resolveReference(res, r.getReference());
            if (!r.getReference().startsWith("#")) {
                if (tr != null && tr.getReference() != null)
                    c = x.ah(tr.getReference());
                else
                    c = x.ah(r.getReference());
            }
        }
        // what to display: if text is provided, then that. if the reference was resolved, then show the generated narrative
        if (r.hasDisplayElement()) {
            c.addText(r.getDisplay());
            if (tr != null && tr.getResource() != null) {
                c.tx(". Generated Summary: ");
                generateResourceSummary(c, tr.getResource(), true, r.getReference().startsWith("#"));
            }
        } else if (tr != null && tr.getResource() != null) {
            generateResourceSummary(c, tr.getResource(), r.getReference().startsWith("#"), r.getReference().startsWith("#"));
        } else {
            c.addText(r.getReference());
        }
    } else if (e instanceof Resource) {
        return;
    } else if (e instanceof ElementDefinition) {
        x.tx("todo-bundle");
    } else if (e != null && !(e instanceof Attachment) && !(e instanceof Narrative) && !(e instanceof Meta)) {
        StructureDefinition sd = context.fetchTypeDefinition(e.fhirType());
        if (sd == null)
            throw new NotImplementedException("type " + e.getClass().getName() + " not handled yet, and no structure found");
        else
            generateByProfile(res, sd, ew, sd.getSnapshot().getElement(), sd.getSnapshot().getElementFirstRep(), getChildrenForPath(sd.getSnapshot().getElement(), sd.getSnapshot().getElementFirstRep().getPath()), x, path, showCodeDetails);
    }
}