Examples with EOperationOutcome org.hl7.fhir.r5.utils.EOperationOutcome used on opensource projects

Example 81 with EOperationOutcome

use of org.hl7.fhir.r5.utils.EOperationOutcome in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilitiesTests method testMapping.

/**
 * check that mapping resolution is working
 *
 * @param context2
 * @
 * @throws EOperationOutcome
 */
private void testMapping() throws EOperationOutcome, Exception {
    StructureDefinition focus = new StructureDefinition();
    StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
    focus.setUrl(Utilities.makeUuidUrn());
    focus.setBaseDefinition(base.getUrl());
    focus.setType(base.getType());
    focus.setDerivation(TypeDerivationRule.CONSTRAINT);
    ElementDefinition id = focus.getDifferential().addElement();
    id.setPath("Patient.identifier");
    id.addMapping().setIdentity("rim").setMap("test");
    List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
    new ProfileUtilities(context, messages, null).generateSnapshot(base, focus, focus.getUrl(), "Simple Test");
    boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size();
    for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
        if (ok) {
            ElementDefinition b = base.getSnapshot().getElement().get(i);
            ElementDefinition f = focus.getSnapshot().getElement().get(i);
            if (!f.hasBase() || !b.getPath().equals(f.getBase().getPath()))
                ok = false;
            else {
                f.setBase(null);
                if (f.getPath().equals("Patient.identifier")) {
                    ok = f.getMapping().size() > b.getMapping().size();
                    if (ok) {
                        f.getMapping().clear();
                        b.getMapping().clear();
                    }
                }
                ok = ok && Base.compareDeep(b, f, true);
            }
        }
    }
    if (!ok) {
        compareXml(base, focus);
        throw new FHIRException("Snap shot generation mapping changes failed");
    } else
        System.out.println("Snap shot generation mapping changes test passed");
}

Example 82 with EOperationOutcome

use of org.hl7.fhir.r5.utils.EOperationOutcome in project org.hl7.fhir.core by hapifhir.

the class ResourceRoundTripTests method test.

@Test
public void test() throws FileNotFoundException, IOException, FHIRException, EOperationOutcome {
    if (TestingUtilities.context == null)
        TestingUtilities.context = SimpleWorkerContext.fromPack("C:\\work\\org.hl7.fhir\\build\\publish\\definitions.xml.zip");
    Resource res = new XmlParser().parse(new FileInputStream("C:\\work\\org.hl7.fhir\\build\\tests\\resources\\unicode.xml"));
    new NarrativeGenerator("", "", TestingUtilities.context).generate((DomainResource) res);
    new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream("C:\\work\\org.hl7.fhir\\build\\tests\\resources\\unicode.out.xml"), res);
}

Example 83 with EOperationOutcome

use of org.hl7.fhir.r5.utils.EOperationOutcome in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilitiesTests method compareXml.

// /**
// * Change one cardinality.
// *
// * @param context2
// * @
// * @throws EOperationOutcome
// */
// private void testCardinalityChange() throws EOperationOutcome, Exception {
// StructureDefinition focus = new StructureDefinition();
// StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
// focus.setUrl(Utilities.makeUuidUrn());
// focus.setBaseDefinition(base.getUrl());
// focus.setType(base.getType());
// focus.setDerivation(TypeDerivationRule.CONSTRAINT);
// ElementDefinition id = focus.getDifferential().addElement();
// id.setPath("Patient.identifier");
// id.setMin(1);
// List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
// new ProfileUtilities(context, messages, null).generateSnapshot(base, focus, focus.getUrl(), "Simple Test" );
// 
// boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size();
// for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
// if (ok) {
// ElementDefinition b = base.getSnapshot().getElement().get(i);
// ElementDefinition f = focus.getSnapshot().getElement().get(i);
// if (!f.hasBase() || !b.getPath().equals(f.getBase().getPath()))
// ok = false;
// else {
// f.setBase(null);
// if (f.getPath().equals("Patient.identifier")) {
// ok = f.getMin() == 1;
// if (ok)
// f.setMin(0);
// }
// ok = ok && Base.compareDeep(b, f, true);
// }
// }
// }
// 
// if (!ok) {
// compareXml(base, focus);
// throw new FHIRException("Snap shot generation chenge cardinality test failed");
// } else
// System.out.println("Snap shot generation chenge cardinality test passed");
// }
// 
// /**
// * check that documentation appending is working
// *
// * @param context2
// * @
// * @throws EOperationOutcome
// */
// private void testDocumentationAppend() throws EOperationOutcome, Exception {
// StructureDefinition focus = new StructureDefinition();
// StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
// focus.setUrl(Utilities.makeUuidUrn());
// focus.setBaseDefinition(base.getUrl());
// focus.setType(base.getType());
// focus.setDerivation(TypeDerivationRule.CONSTRAINT);
// ElementDefinition id = focus.getDifferential().addElement();
// id.setPath("Patient.identifier");
// id.setDefinition("... some more doco");
// List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
// new ProfileUtilities(context, messages, null).generateSnapshot(base, focus, focus.getUrl(), "Simple Test" );
// 
// boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size();
// for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
// if (ok) {
// ElementDefinition b = base.getSnapshot().getElement().get(i);
// ElementDefinition f = focus.getSnapshot().getElement().get(i);
// if (!f.hasBase() || !b.getPath().equals(f.getBase().getPath()))
// ok = false;
// else {
// f.setBase(null);
// if (f.getPath().equals("Patient.identifier")) {
// ok = f.getDefinition().length() > b.getDefinition().length();
// if (ok) {
// f.setDefinition(null);
// b.setDefinition(null);
// }
// }
// ok = ok && Base.compareDeep(b, f, true);
// }
// }
// }
// 
// if (!ok) {
// compareXml(base, focus);
// throw new FHIRException("Snap shot generation documentation append failed");
// } else
// System.out.println("Snap shot generation documentation append test passed");
// }
// 
// 
// /**
// * check that narrowing types is working
// * this one doesn't rename the path
// *
// * @param context2
// * @
// * @throws EOperationOutcome
// */
// private void textTypeNarrowing1() throws EOperationOutcome, Exception {
// StructureDefinition focus = new StructureDefinition();
// StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
// focus.setUrl(Utilities.makeUuidUrn());
// focus.setBaseDefinition(base.getUrl());
// focus.setType(base.getType());
// focus.setDerivation(TypeDerivationRule.CONSTRAINT);
// ElementDefinition id = focus.getDifferential().addElement();
// id.setPath("Patient.deceased[x]");
// id.addType().setCode("dateTime");
// List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
// new ProfileUtilities(context, messages, null).generateSnapshot(base, focus, focus.getUrl(), "Simple Test" );
// 
// boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size();
// for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
// if (ok) {
// ElementDefinition b = base.getSnapshot().getElement().get(i);
// ElementDefinition f = focus.getSnapshot().getElement().get(i);
// if (!f.hasBase() || !b.getPath().equals(f.getBase().getPath()))
// ok = false;
// else {
// f.setBase(null);
// if (f.getPath().equals("Patient.deceasedDateTime")) {
// ok = f.getType().size() == 1 && f.getType().get(0).getCode().equals("dateTime");
// if (ok) {
// f.getType().clear();
// b.getType().clear();
// f.setPath(b.getPath());
// }
// }
// ok = ok && Base.compareDeep(b, f, true);
// }
// }
// }
// 
// if (!ok) {
// compareXml(base, focus);
// throw new FHIRException("Snap shot generation narrow type 1 failed");
// } else
// System.out.println("Snap shot generation narrow type 1 test passed");
// }
// 
// /**
// * check that narrowing types is working
// * this one renames the path
// *
// * @param context2
// * @
// * @throws EOperationOutcome
// */
// private void textTypeNarrowing2() throws EOperationOutcome, Exception {
// StructureDefinition focus = new StructureDefinition();
// StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
// focus.setUrl(Utilities.makeUuidUrn());
// focus.setBaseDefinition(base.getUrl());
// focus.setType(base.getType());
// focus.setDerivation(TypeDerivationRule.CONSTRAINT);
// ElementDefinition id = focus.getDifferential().addElement();
// id.setPath("Patient.deceasedDateTime");
// id.addType().setCode("dateTime");
// List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
// new ProfileUtilities(context, messages, null).generateSnapshot(base, focus, focus.getUrl(), "Simple Test" );
// 
// boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size();
// for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
// if (ok) {
// ElementDefinition b = base.getSnapshot().getElement().get(i);
// ElementDefinition f = focus.getSnapshot().getElement().get(i);
// if (!f.hasBase() || !b.getPath().equals(f.getBase().getPath()))
// ok = false;
// else {
// f.setBase(null);
// if (f.getPath().equals("Patient.deceasedDateTime")) {
// ok = f.getType().size() == 1 && f.getType().get(0).getCode().equals("dateTime");
// if (ok) {
// f.getType().clear();
// b.getType().clear();
// f.setPath(b.getPath());
// }
// }
// ok = ok && Base.compareDeep(b, f, true);
// }
// }
// }
// 
// if (!ok) {
// compareXml(base, focus);
// throw new FHIRException("Snap shot generation narrow type 2 failed");
// } else
// System.out.println("Snap shot generation narrow type 2 test passed");
// }
// 
// /**
// * check that mapping resolution is working
// *
// * @param context2
// * @
// * @throws EOperationOutcome
// */
// private void testMapping() throws EOperationOutcome, Exception {
// StructureDefinition focus = new StructureDefinition();
// StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
// focus.setUrl(Utilities.makeUuidUrn());
// focus.setBaseDefinition(base.getUrl());
// focus.setType(base.getType());
// focus.setDerivation(TypeDerivationRule.CONSTRAINT);
// ElementDefinition id = focus.getDifferential().addElement();
// id.setPath("Patient.identifier");
// id.addMapping().setIdentity("rim").setMap("test");
// List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
// new ProfileUtilities(context, messages, null).generateSnapshot(base, focus, focus.getUrl(), "Simple Test" );
// 
// boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size();
// for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
// if (ok) {
// ElementDefinition b = base.getSnapshot().getElement().get(i);
// ElementDefinition f = focus.getSnapshot().getElement().get(i);
// if (!f.hasBase() || !b.getPath().equals(f.getBase().getPath()))
// ok = false;
// else {
// f.setBase(null);
// if (f.getPath().equals("Patient.identifier")) {
// ok = f.getMapping().size() > b.getMapping().size();
// if (ok) {
// f.getMapping().clear();
// b.getMapping().clear();
// }
// }
// ok = ok && Base.compareDeep(b, f, true);
// }
// }
// }
// 
// if (!ok) {
// compareXml(base, focus);
// throw new FHIRException("Snap shot generation mapping changes failed");
// } else
// System.out.println("Snap shot generation mapping changes test passed");
// }
// 
// /**
// * Walking into a type
// *
// * @param context2
// * @
// * @throws EOperationOutcome
// */
// private void testTypeWalk() throws EOperationOutcome, Exception {
// StructureDefinition focus = new StructureDefinition();
// StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
// focus.setUrl(Utilities.makeUuidUrn());
// focus.setBaseDefinition(base.getUrl());
// focus.setType(base.getType());
// focus.setDerivation(TypeDerivationRule.CONSTRAINT);
// ElementDefinition id = focus.getDifferential().addElement();
// id.setPath("Patient.identifier");
// id.setMustSupport(true);
// id = focus.getDifferential().addElement();
// id.setPath("Patient.identifier.system");
// id.setMustSupport(true);
// List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
// new ProfileUtilities(context, messages, null).generateSnapshot(base, focus, focus.getUrl(), "Simple Test" );
// 
// // the derived should be 8 longer
// boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size() - 8;
// for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
// if (ok) {
// ElementDefinition b = base.getSnapshot().getElement().get(i);
// ElementDefinition f = focus.getSnapshot().getElement().get(i <= 9 ? i : i + 8);
// if (!f.hasBase() || !b.getPath().equals(f.getBase().getPath()))
// ok = false;
// else {
// f.setBase(null);
// if (f.getPath().equals("Patient.identifier")) {
// ok = f.getMustSupport() && !b.getMustSupport();
// if (ok) {
// f.setMustSupportElement(null);
// }
// }
// ok = Base.compareDeep(b, f, true);
// }
// }
// }
// 
// if (!ok) {
// compareXml(base, focus);
// throw new FHIRException("Snap shot generation simple test failed");
// } else
// System.out.println("Snap shot generation simple test passed");
// }
// 
// /**
// * Walking into a type, without explicitly doing so
// *
// * note: this currently fails.
// *
// * @param context2
// * @
// * @throws EOperationOutcome
// */
// private void testTypeWalk2() throws EOperationOutcome, Exception {
// StructureDefinition focus = new StructureDefinition();
// StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
// focus.setUrl(Utilities.makeUuidUrn());
// focus.setBaseDefinition(base.getUrl());
// focus.setType(base.getType());
// focus.setDerivation(TypeDerivationRule.CONSTRAINT);
// ElementDefinition id = focus.getDifferential().addElement();
// id.setPath("Patient.identifier.system");
// id.setMustSupport(true);
// List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
// new ProfileUtilities(context, messages, null).generateSnapshot(base, focus, focus.getUrl(), "Simple Test" );
// 
// // the derived should be 8 longer
// boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size() - 8;
// for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
// if (ok) {
// ElementDefinition b = base.getSnapshot().getElement().get(i);
// ElementDefinition f = focus.getSnapshot().getElement().get(i <= 9 ? i : i + 8);
// if (!f.hasBase() || !b.getPath().equals(f.getBase().getPath()))
// ok = false;
// else {
// f.setBase(null);
// if (f.getPath().equals("Patient.identifier")) {
// ok = f.getMustSupport() && !b.getMustSupport();
// if (ok) {
// f.setMustSupportElement(null);
// }
// }
// ok = Base.compareDeep(b, f, true);
// }
// }
// }
// 
// if (!ok) {
// compareXml(base, focus);
// throw new FHIRException("Snap shot generation simple test failed");
// } else
// System.out.println("Snap shot generation simple test passed");
// }
// 
// 
// /**
// * we're going to slice Patient.identifier
// */
// private void testSlicingSimple() throws EOperationOutcome, Exception {
// 
// StructureDefinition focus = new StructureDefinition();
// StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
// focus.setUrl(Utilities.makeUuidUrn());
// focus.setBaseDefinition(base.getUrl());
// focus.setType(base.getType());
// focus.setDerivation(TypeDerivationRule.CONSTRAINT);
// 
// // set the slice up
// ElementDefinition id = focus.getDifferential().addElement();
// id.setPath("Patient.identifier");
// id.getSlicing().setOrdered(false).setRules(SlicingRules.OPEN).addDiscriminator().setPath("use").setType(DiscriminatorType.VALUE);
// 
// // first slice:
// id = focus.getDifferential().addElement();
// id.setPath("Patient.identifier");
// id.setSliceName("name1");
// id = focus.getDifferential().addElement();
// id.setPath("Patient.identifier.use");
// id.setFixed(new CodeType("usual"));
// 
// // second slice:
// id = focus.getDifferential().addElement();
// id.setPath("Patient.identifier");
// id.setSliceName("name2");
// id = focus.getDifferential().addElement();
// id.setPath("Patient.identifier.use");
// id.setFixed(new CodeType("official"));
// 
// 
// List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
// new ProfileUtilities(context, messages, null).generateSnapshot(base, focus, focus.getUrl(), "Simple Test" );
// 
// // 18 different: identifier + 8 inner children * 2
// boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size() - 18;
// for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
// if (ok) {
// ElementDefinition b = base.getSnapshot().getElement().get(i);
// ElementDefinition f = focus.getSnapshot().getElement().get(i <= 9 ? i : i + 18);
// if (!f.hasBase() || !b.getPath().equals(f.getBase().getPath()))
// ok = false;
// else {
// f.setBase(null);
// if (f.getPath().equals("Patient.identifier")) {
// ok = f.hasSlicing();
// if (ok)
// f.setSlicing(null);
// }
// ok = Base.compareDeep(b, f, true);
// }
// }
// }
// // now, check that the slices we skipped are correct:
// for (int i = 10; i <= 18; i++) {
// if (ok) {
// ElementDefinition d1 = focus.getSnapshot().getElement().get(i);
// ElementDefinition d2 = focus.getSnapshot().getElement().get(i+9);
// if (d1.getPath().equals("Patient.identifier.use")) {
// ok = d1.hasFixed() && d2.hasFixed() && !Base.compareDeep(d1.getFixed(), d2.getFixed(), true);
// if (ok) {
// d1.setFixed(null);
// d2.setFixed(null);
// }
// }
// if (d1.getPath().equals("Patient.identifier")) {
// ok = d1.hasSliceName() && d2.hasSliceName() && !Base.compareDeep(d1.getSliceNameElement(), d2.getSliceNameElement(), true);
// if (ok) {
// d1.setSliceName(null);
// d2.setSliceName(null);
// }
// }
// ok = Base.compareDeep(d1, d2, true);
// }
// }
// // for throughness, we could check against identifier too, but this is not done now.
// 
// if (!ok) {
// compareXml(base, focus);
// throw new FHIRException("Snap shot generation slicing failed");
// } else
// System.out.println("Snap shot generation slicing passed");
// 
// }
// 
// /**
// * we're going to slice Patient.extension and refer to extension by profile
// *
// * implicit: whether to rely on implicit extension slicing
// */
// private void testSlicingExtension(boolean implicit) throws EOperationOutcome, Exception {
// 
// StructureDefinition focus = new StructureDefinition();
// StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
// focus.setUrl(Utilities.makeUuidUrn());
// focus.setBaseDefinition(base.getUrl());
// focus.setType(base.getType());
// focus.setDerivation(TypeDerivationRule.CONSTRAINT);
// 
// // set the slice up
// ElementDefinition id;
// if (!implicit) {
// id = focus.getDifferential().addElement();
// id.setPath("Patient.extension");
// id.getSlicing().setOrdered(false).setRules(SlicingRules.OPEN).addDiscriminator().setPath("url").setType(DiscriminatorType.VALUE);
// id.setMax("3");
// }
// // first slice:
// id = focus.getDifferential().addElement();
// id.setPath("Patient.extension");
// id.setSliceName("name1");
// id.addType().setCode("Extension").setProfile("http://hl7.org/fhir/StructureDefinition/patient-birthTime");
// id.setMin(1);
// 
// // second slice:
// id = focus.getDifferential().addElement();
// id.setPath("Patient.extension");
// id.setSliceName("name2");
// id.addType().setCode("Extension").setProfile("http://hl7.org/fhir/StructureDefinition/patient-mothersMaidenName");
// 
// List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
// ProfileUtilities pu = new ProfileUtilities(context, messages, null);
// pu.generateSnapshot(base, focus, focus.getUrl(), "Simple Test" );
// 
// // 2 different: extension slices
// boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size() - 2;
// for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
// if (ok) {
// ElementDefinition b = base.getSnapshot().getElement().get(i);
// ElementDefinition f = focus.getSnapshot().getElement().get(i <= 7 ? i : i + 2);
// if (!f.hasBase() || !b.getPath().equals(f.getBase().getPath()))
// ok = false;
// else {
// f.setBase(null);
// if (f.getPath().equals("Patient.extension")) {
// ok = f.hasSlicing() && (implicit || f.getMax().equals("3"));
// if (ok) {
// f.setSlicing(null);
// f.setMaxElement(b.getMaxElement());
// }
// }
// if (!f.getPath().equals("Patient.extension")) // no compare that because the definitions get overwritten
// ok = Base.compareDeep(b, f, true);
// }
// }
// }
// // now, check that the slices we skipped are correct:
// if (ok) {
// ElementDefinition d1 = focus.getSnapshot().getElement().get(8);
// ElementDefinition d2 = focus.getSnapshot().getElement().get(9);
// ok = d1.hasType() && d1.getType().get(0).hasProfile() && d2.hasType() && d2.getType().get(0).hasProfile() && !Base.compareDeep(d1.getType(), d2.getType(), true) &&
// d1.getMin() == 1 && d2.getMin() == 0 && d1.getMax().equals("1") && d2.getMax().equals("1");
// if (ok) {
// d1.getType().clear();
// d2.getType().clear();
// d1.setSliceName("x");
// d2.setSliceName("x");
// d1.setMin(0);
// }
// ok = Base.compareDeep(d1, d2, true);
// // for throughness, we could check against extension too, but this is not done now.
// }
// 
// if (!ok) {
// compareXml(base, focus);
// throw new FHIRException("Snap shot generation slicing extensions simple ("+(implicit ? "implicit" : "not implicit")+") failed");
// } else
// System.out.println("Snap shot generation slicing extensions simple ("+(implicit ? "implicit" : "not implicit")+") passed");
// }
// 
// /**
// * we're going to slice Patient.extension and refer to extension by profile. one of the extensions is complex, and we're going to walk into
// * it and make it must support
// *
// * implicit: whether to rely on implicit extension slicing
// */
// private void testSlicingExtensionComplex(boolean implicit) throws EOperationOutcome, Exception {
// 
// StructureDefinition focus = new StructureDefinition();
// StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
// focus.setUrl(Utilities.makeUuidUrn());
// focus.setBaseDefinition(base.getUrl());
// focus.setType(base.getType());
// focus.setDerivation(TypeDerivationRule.CONSTRAINT);
// 
// // set the slice up
// ElementDefinition id;
// if (!implicit) {
// id = focus.getDifferential().addElement();
// id.setPath("Patient.extension");
// id.getSlicing().setOrdered(false).setRules(SlicingRules.OPEN).addDiscriminator().setPath("url").setType(DiscriminatorType.VALUE);
// }
// // first slice  - a simple one to get us going:
// id = focus.getDifferential().addElement();
// id.setPath("Patient.extension");
// id.setSliceName("simple");
// id.addType().setCode("Extension").setProfile("http://hl7.org/fhir/StructureDefinition/patient-birthTime");
// 
// // second slice - the complex one
// // we walk into this and fix properties on the inner extensions
// id = focus.getDifferential().addElement();
// id.setPath("Patient.extension");
// id.setSliceName("complex");
// id.addType().setCode("Extension").setProfile("http://hl7.org/fhir/StructureDefinition/patient-nationality");
// if (!implicit) {
// id = focus.getDifferential().addElement();
// id.setPath("Patient.extension.extension");
// id.getSlicing().setOrdered(false).setRules(SlicingRules.OPEN).addDiscriminator().setPath("url").setType(DiscriminatorType.VALUE);
// }
// id = focus.getDifferential().addElement();
// id.setPath("Patient.extension.extension");
// id.setSliceName("code");
// id.setMustSupport(true);
// id.addType().setCode("Extension").setProfile("http://hl7.org/fhir/StructureDefinition/patient-nationality#code");
// 
// id = focus.getDifferential().addElement();
// id.setPath("Patient.extension.extension");
// id.setSliceName("period");
// id.addType().setCode("Extension").setProfile("http://hl7.org/fhir/StructureDefinition/patient-nationality#period");
// id.setMax("0"); // prohibit this one....
// 
// List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
// new ProfileUtilities(context, messages, null).generateSnapshot(base, focus, focus.getUrl(), "Simple Test" );
// 
// // ok, there's going to 1 (simple) + complex: 1 + id + extnesion.slice + extension.code + (4 inside from that) + extension.period + (4 inside from that) + value + url = 16
// boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size() - 16;
// 
// // custom checks
// ok = ok && rule(focus.getSnapshot().getElement().get(7).getPath().equals("Patient.extension"), "element 7 (base) path");
// ok = ok && rule(focus.getSnapshot().getElement().get(7).hasSlicing(), "element 7 slicing");
// ok = ok && rule(focus.getSnapshot().getElement().get(8).getPath().equals("Patient.extension"), "element 8 (1st slice) path");
// ok = ok && rule(focus.getSnapshot().getElement().get(8).getSliceName().equals("simple"), "element 8 (1st slice) name");
// ok = ok && rule(focus.getSnapshot().getElement().get(8).getType().get(0).getProfile().equals("http://hl7.org/fhir/StructureDefinition/patient-birthTime"), "element 9 (2nd slice) profile name");
// ok = ok && rule(focus.getSnapshot().getElement().get(9).getPath().equals("Patient.extension"), "element 9 (2nd slice) path");
// ok = ok && rule(focus.getSnapshot().getElement().get(9).getSliceName().equals("complex"), "element 8 (1st slice) name");
// ok = ok && rule(focus.getSnapshot().getElement().get(9).getType().get(0).getProfile().equals("http://hl7.org/fhir/StructureDefinition/patient-nationality"), "element 9 (2nd slice) profile name");
// ok = ok && rule(focus.getSnapshot().getElement().get(10).getPath().equals("Patient.extension.id"), "element 10 (2nd slice).id path");
// ok = ok && rule(focus.getSnapshot().getElement().get(11).getPath().equals("Patient.extension.extension"), "element 11 (2nd slice).extension path");
// ok = ok && rule(focus.getSnapshot().getElement().get(12).getPath().equals("Patient.extension.extension"), "element 12 (2nd slice).extension path");
// ok = ok && rule(focus.getSnapshot().getElement().get(12).getMustSupport(), "element 12 (2nd slice).extension must support");
// ok = ok && rule(focus.getSnapshot().getElement().get(13).getPath().equals("Patient.extension.extension.id"), "element 13 (2nd slice).extension.id path");
// ok = ok && rule(focus.getSnapshot().getElement().get(14).getPath().equals("Patient.extension.extension.extension"), "element 14 (2nd slice).extension.extension path");
// ok = ok && rule(focus.getSnapshot().getElement().get(15).getPath().equals("Patient.extension.extension.url"), "element 15 (2nd slice).extension.url path");
// ok = ok && rule(focus.getSnapshot().getElement().get(16).getPath().equals("Patient.extension.extension.valueCodeableConcept"), "element 16 (2nd slice).extension.valueCodeableConcept path");
// ok = ok && rule(focus.getSnapshot().getElement().get(17).getPath().equals("Patient.extension.extension"), "element 17 (2nd slice).extension path");
// ok = ok && rule(focus.getSnapshot().getElement().get(17).getMax().equals("0"), "element 17 (2nd slice).extension cardinality");
// ok = ok && rule(focus.getSnapshot().getElement().get(18).getPath().equals("Patient.extension.extension.id"), "element 18 (2nd slice).extension.id path");
// ok = ok && rule(focus.getSnapshot().getElement().get(19).getPath().equals("Patient.extension.extension.extension"), "element 19 (2nd slice).extension.extension path");
// ok = ok && rule(focus.getSnapshot().getElement().get(20).getPath().equals("Patient.extension.extension.url"), "element 20 (2nd slice).extension.url path");
// ok = ok && rule(focus.getSnapshot().getElement().get(21).getPath().equals("Patient.extension.extension.valuePeriod"), "element 21 (2nd slice).extension.valuePeriod path");
// ok = ok && rule(focus.getSnapshot().getElement().get(22).getPath().equals("Patient.extension.url"), "element 22 (2nd slice).url path");
// ok = ok && rule(focus.getSnapshot().getElement().get(23).getPath().equals("Patient.extension.value[x]"), "element 23 (2nd slice).url path");
// 
// for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
// if (ok) {
// ElementDefinition b = base.getSnapshot().getElement().get(i);
// ElementDefinition f = focus.getSnapshot().getElement().get(i <= 7 ? i : i + 16);
// if (!f.hasBase() || !b.getPath().equals(f.getBase().getPath()))
// ok = false;
// else {
// f.setBase(null);
// if (f.getPath().equals("Patient.extension")) {
// ok = f.hasSlicing();
// if (ok)
// f.setSlicing(null);
// }
// if (!f.getPath().equals("Patient.extension")) // no compare that because the definitions get overwritten
// ok = Base.compareDeep(b, f, true);
// }
// }
// }
// 
// if (!ok) {
// compareXml(base, focus);
// throw new FHIRException("Snap shot generation slicing extensions complex ("+(implicit ? "implicit" : "not implicit")+") failed");
// } else
// System.out.println("Snap shot generation slicing extensions complex ("+(implicit ? "implicit" : "not implicit")+") passed");
// }
// 
// private void testSlicingTask8742() throws EOperationOutcome, Exception {
// StructureDefinition focus = new StructureDefinition();
// StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Organization").copy();
// focus.setUrl(Utilities.makeUuidUrn());
// focus.setBaseDefinition(base.getUrl());
// focus.setType(base.getType());
// focus.setDerivation(TypeDerivationRule.CONSTRAINT);
// 
// ElementDefinition id = focus.getDifferential().addElement();
// id.setPath("Organization.address");
// id.setMin(1);
// id.setMax("1");
// id.setMustSupport(true);
// 
// id = focus.getDifferential().addElement();
// id.setPath("Organization.address.extension");
// id.setSliceName("USLabCountycodes");
// id.getSlicing().setOrdered(false).setRules(SlicingRules.OPEN).addDiscriminator().setPath("url").setType(DiscriminatorType.VALUE);
// id.setShort("County/Parish FIPS codes");
// id.setDefinition("County/Parish FIPS codes.");
// id.setRequirements("County/Parish Code SHALL use FIPS 6-4  ( INCITS 31:2009).");
// id.setMin(0);
// id.setMax("1");
// id.addType().setCode("Extension").setProfile("http://hl7.org/fhir/StructureDefinition/us-core-county");
// id.setMustSupport(true);
// id.getBinding().setStrength(BindingStrength.REQUIRED).setDescription("FIPS codes for US counties and county equivalent entities.").setValueSet(new Reference().setReference("http://hl7.org/fhir/ValueSet/fips-county"));
// List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
// 
// new ProfileUtilities(context, messages, null).generateSnapshot(base, focus, focus.getUrl(), "Simple Test" );
// 
// // 14 for address with one sliced extension
// boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size() - 13;
// 
// if (!ok) {
// compareXml(base, focus);
// throw new FHIRException("Snap shot generation test 8742 failed");
// } else
// System.out.println("Snap shot generation test 8742 passed");
// }
// 
// 
// private boolean rule(boolean ok, String message) {
// if (!ok)
// System.out.println("Test failed: " + message);
// return ok;
// }
// 
private void compareXml(StructureDefinition base, StructureDefinition focus) throws FileNotFoundException, IOException {
    base.setText(null);
    focus.setText(null);
    base.setDifferential(null);
    // focus.setDifferential(null);
    String f1 = Utilities.path("c:", "temp", "base.xml");
    String f2 = Utilities.path("c:", "temp", "derived.xml");
    new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(f1), base);
    ;
    new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(f2), focus);
    ;
    String diff = Utilities.path(System.getenv("ProgramFiles(X86)"), "WinMerge", "WinMergeU.exe");
    List<String> command = new ArrayList<String>();
    command.add("\"" + diff + "\" \"" + f1 + "\" \"" + f2 + "\"");
    ProcessBuilder builder = new ProcessBuilder(command);
    builder.directory(new CSFile(Utilities.path("[tmp]")));
    builder.start();
}

Example 84 with EOperationOutcome

use of org.hl7.fhir.r5.utils.EOperationOutcome in project org.hl7.fhir.core by hapifhir.

the class ResourceRoundTripTests method test.

@Test
@Disabled
public void test() throws FileNotFoundException, IOException, FHIRException, EOperationOutcome, UcumException {
    Resource res = new XmlParser().parse(new FileInputStream(TestingUtilities.resourceNameToFile("unicode.xml")));
    new NarrativeGenerator("", "", TestingUtilities.context()).generate((DomainResource) res, null);
    new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(TestingUtilities.resourceNameToFile("gen", "unicode.out.xml")), res);
}

Example 85 with EOperationOutcome

use of org.hl7.fhir.r5.utils.EOperationOutcome in project org.hl7.fhir.core by hapifhir.

the class LiquidRenderer method render.

@Override
public boolean render(XhtmlNode x, ResourceWrapper r) throws FHIRFormatError, DefinitionException, IOException, FHIRException, EOperationOutcome {
    LiquidEngine engine = new LiquidEngine(context.getWorker(), context.getServices());
    XhtmlNode xn;
    try {
        LiquidDocument doc = engine.parse(liquidTemplate, "template");
        String html = engine.evaluate(doc, r.getBase(), rcontext);
        xn = new XhtmlParser().parseFragment(html);
        if (!x.getName().equals("div"))
            throw new FHIRException("Error in template: Root element is not 'div'");
    } catch (FHIRException | IOException e) {
        xn = new XhtmlNode(NodeType.Element, "div");
        xn.para().b().style("color: maroon").tx("Exception generating Narrative: " + e.getMessage());
    }
    x.getChildNodes().addAll(xn.getChildNodes());
    return true;
}