Examples with CSFile org.hl7.fhir.utilities.CSFile used on opensource projects

Example 26 with CSFile

use of org.hl7.fhir.utilities.CSFile in project org.hl7.fhir.core by hapifhir.

the class ToolsHelper method executeRoundTrip.

public void executeRoundTrip(String[] args) throws IOException, FHIRException {
    FileInputStream in;
    File source = new CSFile(args[1]);
    File dest = new CSFile(args[2]);
    if (args.length >= 4) {
        Utilities.copyFile(args[1], args[3]);
    }
    if (!source.exists())
        throw new FHIRException("Source File \"" + source.getAbsolutePath() + "\" not found");
    in = new CSFileInputStream(source);
    XmlParser p = new XmlParser();
    JsonParser parser = new JsonParser();
    JsonParser pj = parser;
    Resource rf = p.parse(in);
    ByteArrayOutputStream json = new ByteArrayOutputStream();
    parser.setOutputStyle(OutputStyle.PRETTY);
    parser.compose(json, rf);
    json.close();
    TextFile.stringToFile(new String(json.toByteArray()), Utilities.changeFileExt(dest.getAbsolutePath(), ".json"));
    rf = pj.parse(new ByteArrayInputStream(json.toByteArray()));
    FileOutputStream s = new FileOutputStream(dest);
    new XmlParser().compose(s, rf, true);
    s.close();
}

Example 27 with CSFile

use of org.hl7.fhir.utilities.CSFile in project org.hl7.fhir.core by hapifhir.

the class ToolsHelper method executeJson.

public String executeJson(String[] args) throws IOException, FHIRException {
    FileInputStream in;
    File source = new CSFile(args[1]);
    File dest = new CSFile(args[2]);
    File destc = new CSFile(Utilities.changeFileExt(args[2], ".canonical.json"));
    File destt = new CSFile(args[2] + ".tmp");
    File destr = new CSFile(Utilities.changeFileExt(args[2], ".ttl"));
    if (!source.exists())
        throw new FHIRException("Source File \"" + source.getAbsolutePath() + "\" not found");
    in = new CSFileInputStream(source);
    XmlParser p = new XmlParser();
    Resource rf = p.parse(in);
    JsonParser json = new JsonParser();
    json.setOutputStyle(OutputStyle.PRETTY);
    FileOutputStream s = new FileOutputStream(dest);
    json.compose(s, rf);
    s.close();
    json.setOutputStyle(OutputStyle.CANONICAL);
    s = new FileOutputStream(destc);
    json.compose(s, rf);
    s.close();
    json.setSuppressXhtml("Snipped for Brevity");
    json.setOutputStyle(OutputStyle.PRETTY);
    s = new FileOutputStream(destt);
    json.compose(s, rf);
    s.close();
    RdfParserBase rdf = new RdfParser();
    s = new FileOutputStream(destr);
    rdf.compose(s, rf);
    s.close();
    return TextFile.fileToString(destt.getAbsolutePath());
}

Example 28 with CSFile

use of org.hl7.fhir.utilities.CSFile in project org.hl7.fhir.core by hapifhir.

the class ToolsHelper method executeCanonicalXml.

public void executeCanonicalXml(String[] args) throws FHIRException, IOException {
    FileInputStream in;
    File source = new CSFile(args[1]);
    File dest = new CSFile(args[2]);
    if (!source.exists())
        throw new FHIRException("Source File \"" + source.getAbsolutePath() + "\" not found");
    in = new CSFileInputStream(source);
    XmlParser p = new XmlParser();
    Resource rf = p.parse(in);
    XmlParser cxml = new XmlParser();
    cxml.setOutputStyle(OutputStyle.NORMAL);
    cxml.compose(new FileOutputStream(dest), rf);
}

Example 29 with CSFile

use of org.hl7.fhir.utilities.CSFile in project org.hl7.fhir.core by hapifhir.

the class ToolsHelper method executeFragments.

public void executeFragments(String[] args) throws IOException {
    try {
        File source = new CSFile(args[1]);
        if (!source.exists())
            throw new FHIRException("Source File \"" + source.getAbsolutePath() + "\" not found");
        XmlPullParser xpp = loadXml(new FileInputStream(source));
        nextNoWhitespace(xpp);
        if (!xpp.getName().equals("tests"))
            throw new FHIRFormatError("Unable to parse file - starts with " + xpp.getName());
        xpp.next();
        nextNoWhitespace(xpp);
        StringBuilder s = new StringBuilder();
        s.append("<results>\r\n");
        int fail = 0;
        while (xpp.getEventType() == XmlPullParser.START_TAG && xpp.getName().equals("test")) {
            String id = xpp.getAttributeValue(null, "id");
            String type = xpp.getAttributeValue(null, "type");
            // test
            xpp.next();
            nextNoWhitespace(xpp);
            // pre
            xpp.next();
            nextNoWhitespace(xpp);
            XmlParser p = new XmlParser();
            try {
                p.parseFragment(xpp, type);
                s.append("<result id=\"" + id + "\" outcome=\"ok\"/>\r\n");
                nextNoWhitespace(xpp);
            } catch (Exception e) {
                s.append("<result id=\"" + id + "\" outcome=\"error\" msg=\"" + Utilities.escapeXml(e.getMessage()) + "\"/>\r\n");
                fail++;
            }
            while (xpp.getEventType() != XmlPullParser.END_TAG || !xpp.getName().equals("pre")) xpp.next();
            xpp.next();
            nextNoWhitespace(xpp);
            xpp.next();
            nextNoWhitespace(xpp);
        }
        s.append("</results>\r\n");
        TextFile.stringToFile(s.toString(), args[2]);
    } catch (Exception e) {
        e.printStackTrace();
        TextFile.stringToFile(e.getMessage(), args[2]);
    }
}

Example 30 with CSFile

use of org.hl7.fhir.utilities.CSFile in project org.hl7.fhir.core by hapifhir.

the class ToolsHelper method executeFragments.

public void executeFragments(String[] args) throws IOException {
    try {
        File source = new CSFile(args[1]);
        if (!source.exists())
            throw new FHIRException("Source File \"" + source.getAbsolutePath() + "\" not found");
        XmlPullParser xpp = loadXml(new FileInputStream(source));
        nextNoWhitespace(xpp);
        if (!xpp.getName().equals("tests"))
            throw new FHIRFormatError("Unable to parse file - starts with " + xpp.getName());
        xpp.next();
        nextNoWhitespace(xpp);
        StringBuilder s = new StringBuilder();
        s.append("<results>\r\n");
        int fail = 0;
        while (xpp.getEventType() == XmlPullParser.START_TAG && xpp.getName().equals("test")) {
            String id = xpp.getAttributeValue(null, "id");
            String type = xpp.getAttributeValue(null, "type");
            // test
            xpp.next();
            nextNoWhitespace(xpp);
            // pre
            xpp.next();
            nextNoWhitespace(xpp);
            XmlParser p = new XmlParser();
            try {
                p.parseFragment(xpp, type);
                s.append("<result id=\"" + id + "\" outcome=\"ok\"/>\r\n");
                nextNoWhitespace(xpp);
            } catch (Exception e) {
                s.append("<result id=\"" + id + "\" outcome=\"error\" msg=\"" + Utilities.escapeXml(e.getMessage()) + "\"/>\r\n");
                fail++;
            }
            while (xpp.getEventType() != XmlPullParser.END_TAG || !xpp.getName().equals("pre")) xpp.next();
            xpp.next();
            nextNoWhitespace(xpp);
            xpp.next();
            nextNoWhitespace(xpp);
        }
        s.append("</results>\r\n");
        TextFile.stringToFile(s.toString(), args[2]);
    } catch (Exception e) {
        e.printStackTrace();
        TextFile.stringToFile(e.getMessage(), args[2]);
    }
}