Examples with Package org.hl7.fhir.utilities.graphql.Package used on opensource projects

Example 11 with Package

use of org.hl7.fhir.utilities.graphql.Package in project org.hl7.fhir.core by hapifhir.

the class XMLPackageConvertor method process.

private void process(File folder) throws IOException {
    for (File f : folder.listFiles()) {
        if (f.isDirectory()) {
            process(f);
        } else {
            if (f.getName().endsWith(".tgz")) {
                System.out.println("Package " + f.getAbsolutePath());
                NpmPackage p = NpmPackage.fromPackage(new FileInputStream(f));
                if (p.getNpm().has("dependencies")) {
                    JsonObject dep = p.getNpm().getAsJsonObject("dependencies");
                    if (dep.entrySet().isEmpty()) {
                        System.out.println("  Dependencies: none");
                    } else {
                        System.out.println("  Dependencies:");
                        for (Entry<String, JsonElement> e : dep.entrySet()) {
                            System.out.println("    " + e.getKey() + ": " + e.getValue().getAsString());
                        }
                    }
                } else {
                    System.out.println("  Dependencies: n/a");
                }
            }
        }
    }
}

Example 12 with Package

use of org.hl7.fhir.utilities.graphql.Package in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeImplementationGuideImplementationGuidePackageComponent.

protected void composeImplementationGuideImplementationGuidePackageComponent(Complex parent, String parentType, String name, ImplementationGuide.ImplementationGuidePackageComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "package", name, element, index);
    if (element.hasNameElement())
        composeString(t, "ImplementationGuide", "name", element.getNameElement(), -1);
    if (element.hasDescriptionElement())
        composeString(t, "ImplementationGuide", "description", element.getDescriptionElement(), -1);
    for (int i = 0; i < element.getResource().size(); i++) composeImplementationGuideImplementationGuidePackageResourceComponent(t, "ImplementationGuide", "resource", element.getResource().get(i), i);
}

Example 13 with Package

use of org.hl7.fhir.utilities.graphql.Package in project org.hl7.fhir.core by hapifhir.

the class CorePackageTools method buildXml.

private void buildXml(String json, String xml, String version) throws FHIRFormatError, IOException {
    for (File f : new File(Utilities.path(json, "package")).listFiles()) {
        if (f.getName().endsWith(".json")) {
            JsonObject j = new JsonTrackingParser().parseJson(f);
            if (j.has("resourceType")) {
                if ("1.4".equals(version)) {
                    String n = f.getName();
                    System.out.println(n);
                    String xn = Utilities.changeFileExt(n, ".xml");
                    org.hl7.fhir.dstu2016may.model.Resource r = new org.hl7.fhir.dstu2016may.formats.JsonParser().parse(new FileInputStream(f));
                    new org.hl7.fhir.dstu2016may.formats.XmlParser().setOutputStyle(org.hl7.fhir.dstu2016may.formats.IParser.OutputStyle.NORMAL).compose(new FileOutputStream(Utilities.path(xml, "package", xn)), r);
                }
            }
        }
    }
}

Example 14 with Package

use of org.hl7.fhir.utilities.graphql.Package in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeImplementationGuideImplementationGuidePageComponent.

protected void composeImplementationGuideImplementationGuidePageComponent(Complex parent, String parentType, String name, ImplementationGuide.ImplementationGuidePageComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "page", name, element, index);
    if (element.hasSourceElement())
        composeUri(t, "ImplementationGuide", "source", element.getSourceElement(), -1);
    if (element.hasTitleElement())
        composeString(t, "ImplementationGuide", "title", element.getTitleElement(), -1);
    if (element.hasKindElement())
        composeEnum(t, "ImplementationGuide", "kind", element.getKindElement(), -1);
    for (int i = 0; i < element.getType().size(); i++) composeCode(t, "ImplementationGuide", "type", element.getType().get(i), i);
    for (int i = 0; i < element.getPackage().size(); i++) composeString(t, "ImplementationGuide", "package", element.getPackage().get(i), i);
    if (element.hasFormatElement())
        composeCode(t, "ImplementationGuide", "format", element.getFormatElement(), -1);
    for (int i = 0; i < element.getPage().size(); i++) composeImplementationGuideImplementationGuidePageComponent(t, "ImplementationGuide", "page", element.getPage().get(i), i);
}

Example 15 with Package

use of org.hl7.fhir.utilities.graphql.Package in project org.hl7.fhir.core by hapifhir.

the class JavaResourceGenerator method generate.

// public void generate(ElementDefinition root, String name, JavaGenClass clss, ProfiledType cd, Date genDate, String version, boolean isAbstract, Map<String, SearchParameterDefn> nameToSearchParamDef, ElementDefinition template) throws Exception {
public void generate(Analysis analysis) throws Exception {
    if (analysis.getStructure().getKind() == StructureDefinitionKind.RESOURCE) {
        clss = JavaGenClass.Resource;
    } else {
        clss = JavaGenClass.Type;
    }
    write("package org.hl7.fhir." + jid + ".model;\r\n");
    startMark(version, genDate);
    // hasList(root);
    boolean hl = true;
    boolean hh = hasXhtml(analysis.getStructure().getSnapshot().getElement());
    boolean hd = hasDecimal(analysis.getStructure().getSnapshot().getElement());
    boolean hs = hasString(analysis.getStructure().getSnapshot().getElement());
    boolean he = hasSharedEnums(analysis.getStructure().getSnapshot().getElement());
    boolean hn = hasNestedTypes(analysis.getStructure().getSnapshot().getElement());
    if (hl || hh || hd || he) {
        if (hl) {
            write("import java.util.ArrayList;\r\n");
            write("import java.util.Date;\r\n");
            write("import java.util.List;\r\n");
        } else {
            write("import java.util.Date;\r\n");
        }
        if (hh) {
            write("import org.hl7.fhir.utilities.xhtml.NodeType;\r\n");
            write("import org.hl7.fhir.utilities.xhtml.XhtmlNode;\r\n");
        }
        if (hd)
            write("import java.math.*;\r\n");
        if (hs)
            write("import org.hl7.fhir.utilities.Utilities;\r\n");
        if (he)
            write("import org.hl7.fhir." + jid + ".model.Enumerations.*;\r\n");
    }
    if (hn) {
        if (clss == JavaGenClass.Resource) {
            write("import org.hl7.fhir.instance.model.api.IBaseBackboneElement;\r\n");
        } else {
            write("import org.hl7.fhir.instance.model.api.IBaseDatatypeElement;\r\n");
        }
    }
    write("import org.hl7.fhir.exceptions.FHIRException;\r\n");
    write("import org.hl7.fhir.instance.model.api.ICompositeType;\r\n");
    if (clss == JavaGenClass.Resource) {
        write("import ca.uhn.fhir.model.api.annotation.ResourceDef;\r\n");
        write("import ca.uhn.fhir.model.api.annotation.SearchParamDefinition;\r\n");
    }
    if (clss == JavaGenClass.Resource || "BackboneElement".equals(analysis.getName()) || "BackboneType".equals(analysis.getName())) {
        write("import org.hl7.fhir.instance.model.api.IBaseBackboneElement;\r\n");
    }
    write("import ca.uhn.fhir.model.api.annotation.Child;\r\n");
    write("import ca.uhn.fhir.model.api.annotation.ChildOrder;\r\n");
    if (clss != JavaGenClass.Resource) {
        write("import ca.uhn.fhir.model.api.annotation.DatatypeDef;\r\n");
    }
    write("import ca.uhn.fhir.model.api.annotation.Description;\r\n");
    write("import ca.uhn.fhir.model.api.annotation.Block;\r\n");
    write("\r\n");
    if (config.getIni().hasProperty("imports", analysis.getName())) {
        for (String imp : config.getIni().getStringProperty("imports", analysis.getName()).split("\\,")) {
            write("import " + imp.replace("{{jid}}", jid) + ";\r\n");
        }
    }
    jdoc("", replaceTitle(analysis.getName(), analysis.getStructure().getDescription()));
    TypeInfo ti = analysis.getRootType();
    boolean hasChildren = ti.getChildren().size() > 0;
    String superName = analysis.getAncestor() == null ? null : analysis.getAncestor().getName();
    if (VersionUtilities.isR4BVer(version) && !Utilities.noString(config.getIni().getStringProperty("R4B.CanonicalResources", analysis.getName()))) {
        superName = "CanonicalResource";
    }
    String hierarchy = analysis.getAncestor() != null ? "extends " + superName : "";
    if (clss == JavaGenClass.Resource) {
        if (!analysis.isAbstract()) {
            write("@ResourceDef(name=\"" + upFirst(analysis.getName()).replace("ListResource", "List") + "\", profile=\"http://hl7.org/fhir/StructureDefinition/" + upFirst(analysis.getName()) + "\")\r\n");
        }
    } else {
        write("@DatatypeDef(name=\"" + upFirst(analysis.getName()) + "\")\r\n");
        hierarchy = hierarchy + " implements ICompositeType";
    }
    if (config.getIni().hasProperty("hierarchy", analysis.getName())) {
        String h = config.getIni().getStringProperty("hierarchy", analysis.getName());
        if (analysis.getAncestor() != null) {
            h = h.replace("{{super}}", superName);
        }
        hierarchy = h;
    }
    write("public " + (analysis.isAbstract() ? "abstract " : "") + "class " + analysis.getClassName() + " " + hierarchy.trim() + " {\r\n");
    write("\r\n");
    for (String s : sorted(analysis.getEnums().keySet())) {
        EnumInfo e = analysis.getEnums().get(s);
        generateEnum(e);
    }
    for (TypeInfo t : analysis.getTypeList()) {
        generateType(analysis, t);
    }
    allfields = "";
    int i = 0;
    for (ElementDefinition e : ti.getChildren()) {
        if (!analysis.isInterface()) {
            generateField(analysis, ti, e, "    ", i++);
        }
    }
    write("    private static final long serialVersionUID = " + Long.toString(allfields.hashCode()) + "L;\r\n\r\n");
    hashSum = hashSum + allfields.hashCode();
    List<ElementDefinition> mandatory = new ArrayList<ElementDefinition>();
    generateConstructor(analysis.getClassName(), mandatory, "  ");
    if (hasChildren) {
        for (ElementDefinition e : ti.getChildren()) {
            if (e.getMin() > 0)
                mandatory.add(e);
        }
        if (mandatory.size() > 0)
            generateConstructor(analysis.getClassName(), mandatory, "  ");
        generateTypeSpecificConstructors(analysis.getClassName());
        for (ElementDefinition e : ti.getChildren()) {
            if (analysis.isInterface()) {
                generateAbstractAccessors(analysis, ti, e, "    ");
            } else {
                generateAccessors(analysis, ti, e, "    ", matchingInheritedElement(ti.getInheritedChildren(), e, analysis.getName()));
            }
        }
        if (!analysis.isInterface() && ti.getInheritedChildren() != null) {
            for (ElementDefinition e : filterInherited(ti.getInheritedChildren(), ti.getChildren())) {
                generateUnimplementedAccessors(analysis, ti, e, "    ");
            }
        }
        generateChildrenRegister(analysis, ti, "    ");
        generatePropertyGetterId(analysis, ti, "    ");
        generatePropertySetterId(analysis, ti, "    ");
        generatePropertySetterName(analysis, ti, "    ");
        generatePropertyMaker(analysis, ti, "    ");
        generatePropertyTypeGetter(analysis, ti, "    ");
        generateChildAdder(analysis, ti, "    ");
    }
    generateFhirType(analysis.getName());
    // // check for mappings
    // for (String map : root.getMappings().keySet()) {
    // if ("http://hl7.org/fhir/workflow".equals(map)) {
    // String namenn = root.getMapping(map);
    // if (patterns.containsKey(namenn)) {
    // generateImpl(namenn, patterns.get(namenn), upFirst(name), root, version, genDate);
    // }
    // }
    // }
    generateCopy(analysis, ti, false);
    if (hasChildren) {
        generateEquals(analysis, ti, false);
        generateIsEmpty(analysis, ti, false);
    }
    if (clss == JavaGenClass.Resource && !analysis.isAbstract()) {
        write("  @Override\r\n");
        write("  public ResourceType getResourceType() {\r\n");
        write("    return ResourceType." + analysis.getName() + ";\r\n");
        write("   }\r\n");
        write("\r\n");
    } else if (analysis.isAbstract() && analysis.getAncestor() != null && Utilities.noString(superName)) {
        write("\r\n");
        write("  @Override\r\n");
        write("  public String getIdBase() {\r\n");
        write("    return getId();\r\n");
        write("  }\r\n");
        write("  \r\n");
        write("  @Override\r\n");
        write("  public void setIdBase(String value) {\r\n");
        write("    setId(value);\r\n");
        write("  }\r\n");
        write("  public abstract ResourceType getResourceType();\r\n");
    } else if (analysis.isAbstract() && analysis.getAncestor() != null && Utilities.noString(superName)) {
        write("  @Override\r\n");
        write("  public String getIdBase() {\r\n");
        write("    return getId();\r\n");
        write("  }\r\n");
        write("  \r\n");
        write("  @Override\r\n");
        write("  public void setIdBase(String value) {\r\n");
        write("    setId(value);\r\n");
        write("  }\r\n");
    }
    // Write resource fields which can be used as constants in client code
    // to refer to standard search params
    Set<String> spcodes = new HashSet<>();
    for (SearchParameter sp : analysis.getSearchParams()) {
        String code = sp.getCode();
        if (!spcodes.contains(code)) {
            spcodes.add(code);
            /* 
		     * For composite codes we want to find the two param this is a composite
		     * of. We generate search parameter constants which reference the 
		     * component parts of the composite.  
		     */
            if (sp.getType() == SearchParamType.COMPOSITE) {
                if (code.endsWith("-[x]")) {
                    // partialCode will have "value" in this example
                    String partialCode = code.substring(0, code.length() - 4);
                    partialCode = partialCode.substring(partialCode.lastIndexOf('-') + 1);
                    // rootCode will have "component-code"
                    String rootCode = code.substring(0, code.indexOf("-" + partialCode));
                    /*
		         * If the composite has the form "foo-bar[x]" we expand this to create 
		         * a constant for each of the possible [x] values, so that client have
		         * static binding to the individual possibilities. AFAIK this is only
		         * used right now in Observation (e.g. for code-value-[x]) 
		         */
                    for (SearchParameter nextCandidate : analysis.getSearchParams()) {
                        if (nextCandidate.getCode().startsWith(partialCode)) {
                            String nextCompositeCode = rootCode + "-" + nextCandidate.getCode();
                            String[] compositeOf = new String[] { rootCode, nextCandidate.getCode() };
                            writeSearchParameterField(analysis.getName(), clss, analysis.isAbstract(), sp, nextCompositeCode, compositeOf, analysis.getSearchParams(), analysis.getName());
                        }
                    }
                } else {
                    SearchParameter comp0 = definitions.getSearchParams().get(sp.getComponent().get(0).getDefinition());
                    SearchParameter comp1 = definitions.getSearchParams().get(sp.getComponent().get(1).getDefinition());
                    if (comp0 != null && comp1 != null) {
                        String[] compositeOf = new String[] { comp0.getCode(), comp1.getCode() };
                        writeSearchParameterField(analysis.getName(), clss, analysis.isAbstract(), sp, sp.getCode(), compositeOf, analysis.getSearchParams(), analysis.getName());
                    }
                }
            } else if (code.contains("[x]")) {
                /*
		       * We only know how to handle search parameters with [x] in the name
		       * where it's a composite, and the [x] comes last. Are there other possibilities?
		       */
                throw new Exception("Unable to generate constant for search parameter: " + code);
            } else {
                writeSearchParameterField(analysis.getName(), clss, analysis.isAbstract(), sp, code, null, analysis.getSearchParams(), analysis.getName());
            }
        }
    }
    if (VersionUtilities.isR4BVer(version)) {
        String extras = config.getIni().getStringProperty("R4B.NullImplementation", analysis.getName());
        if (!Utilities.noString(extras)) {
            for (String n : extras.split("\\,")) {
                String t = n.substring(n.indexOf(":") + 1);
                n = n.substring(0, n.indexOf(":"));
                if (n.endsWith("[]")) {
                    n = Utilities.capitalize(n.substring(0, n.length() - 2));
                    write("      @Override\r\n");
                    write("      public List<" + t + "> get" + n + "() {\r\n");
                    write("        return new ArrayList<>();\r\n");
                    write("      }\r\n");
                    write("      \r\n");
                    write("      @Override\r\n");
                    write("      public CanonicalResource set" + n + "(List<" + t + "> the" + n + ") {\r\n");
                    write("        return this;\r\n");
                    write("      }\r\n");
                    write("      \r\n");
                    write("      @Override\r\n");
                    write("      public boolean has" + n + "() {\r\n");
                    write("        return false;\r\n");
                    write("      }\r\n");
                    write("      \r\n");
                    write("      @Override\r\n");
                    write("      public " + t + " add" + n + "() {\r\n");
                    write("	        return null;\r\n");
                    write("	      }\r\n");
                    write("	      \r\n");
                    write("      @Override\r\n");
                    write("      public CanonicalResource add" + n + "(" + t + " t) {\r\n");
                    write("        return null;\r\n");
                    write("	      }\r\n");
                    write("      \r\n");
                    write("      @Override\r\n");
                    write("      public " + t + " get" + n + "FirstRep() {\r\n");
                    write("        return new " + t + "();\r\n");
                    write("      }\r\n");
                    write("      \r\n");
                } else if (t.contains("|")) {
                    n = Utilities.capitalize(n);
                    String t1 = t.substring(0, t.indexOf("|"));
                    String t2 = t.substring(t.indexOf("|") + 1);
                    write("      @Override\r\n");
                    write("      public " + t1 + " get" + n + "() {\r\n");
                    if ("boolean".equals(t1)) {
                        write("        return false;\r\n");
                    } else {
                        write("        return new " + t1 + "();\r\n");
                    }
                    write("      }\r\n");
                    write("      \r\n");
                    write("      @Override\r\n");
                    write("      public " + t2 + " get" + n + "Element() {\r\n");
                    write("        return new " + t2 + "();\r\n");
                    write("      }\r\n");
                    write("      \r\n");
                    write("      @Override\r\n");
                    write("      public CanonicalResource set" + n + "(" + t1 + " the" + n + ") {\r\n");
                    write("        return this;\r\n");
                    write("      }\r\n");
                    write("      \r\n");
                    write("      @Override\r\n");
                    write("      public CanonicalResource set" + n + "Element(" + t2 + " the" + n + ") {\r\n");
                    write("        return this;\r\n");
                    write("      }\r\n");
                    write("      \r\n");
                    write("      @Override\r\n");
                    write("      public boolean has" + n + "() {\r\n");
                    write("        return false;\r\n");
                    write("      }\r\n");
                    write("      \r\n");
                    write("      @Override\r\n");
                    write("      public boolean has" + n + "Element() {\r\n");
                    write("        return false;\r\n");
                    write("      }\r\n");
                    write("      \r\n");
                    write("      \r\n");
                } else {
                    n = Utilities.capitalize(n);
                    write("      @Override\r\n");
                    write("      public " + t + " get" + n + "() {\r\n");
                    write("        return new " + t + "();\r\n");
                    write("      }\r\n");
                    write("      \r\n");
                    write("      @Override\r\n");
                    write("      public CanonicalResource set" + n + "(" + t + " the" + n + ") {\r\n");
                    write("        return this;\r\n");
                    write("      }\r\n");
                    write("      \r\n");
                    write("      @Override\r\n");
                    write("      public boolean has" + n + "() {\r\n");
                    write("        return false;\r\n");
                    write("      }\r\n");
                    write("      \r\n");
                    write("      @Override\r\n");
                    write("      public boolean has" + n + "Element() {\r\n");
                    write("        return false;\r\n");
                    write("      }\r\n");
                    write("      \r\n");
                    write("      \r\n");
                }
            }
        }
    }
    if (config.getAdornments().containsKey(analysis.getClassName())) {
        write("// Manual code (from Configuration.txt):\r\n");
        write(config.getAdornments().get(analysis.getClassName()) + "\r\n");
        write("// end addition\r\n");
    }
    write("\r\n");
    write("}\r\n");
    write("\r\n");
    flush();
}