Examples with FilesystemPackageCacheManager org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager used on opensource projects

Example 11 with FilesystemPackageCacheManager

use of org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager in project org.hl7.fhir.core by hapifhir.

the class SnapShotGenerationTests method testGen.

private void testGen(boolean fail, TestDetails test, SnapShotGenerationTestsContext context) throws Exception {
    if (!Utilities.noString(test.register)) {
        List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
        ProfileUtilities pu = new ProfileUtilities(TestingUtilities.context(), messages, null);
        pu.setNewSlicingProcessing(true);
        for (StructureDefinition sd : test.included) {
            pu.setIds(sd, false);
        }
        for (StructureDefinition sd : test.included) {
            if (!TestingUtilities.context().hasResource(StructureDefinition.class, sd.getUrl())) {
                TestingUtilities.context().cacheResource(sd);
            }
        }
        StructureDefinition base = TestingUtilities.context().fetchResource(StructureDefinition.class, test.included.get(0).getBaseDefinition());
        if (base != null) {
            pu.generateSnapshot(base, test.included.get(0), test.included.get(0).getUrl(), "http://test.org/profile", test.included.get(0).getName());
        }
        int ec = 0;
        for (ValidationMessage vm : messages) {
            if (vm.getLevel() == IssueSeverity.ERROR) {
                System.out.println(vm.summary());
                ec++;
            }
        }
        if (ec > 0)
            throw new FHIRException("register gen failed: " + messages.toString());
    }
    StructureDefinition base = getSD(test.getSource().getBaseDefinition(), context);
    if (!base.getUrl().equals(test.getSource().getBaseDefinition()))
        throw new Exception("URL mismatch on base: " + base.getUrl() + " wanting " + test.getSource().getBaseDefinition());
    StructureDefinition output = test.getSource().copy();
    ProfileUtilities pu = new ProfileUtilities(TestingUtilities.context(), messages, new TestPKP());
    pu.setNewSlicingProcessing(test.isNewSliceProcessing());
    pu.setThrowException(false);
    pu.setDebug(test.isDebug());
    pu.setIds(test.getSource(), false);
    if (!TestingUtilities.context().hasPackage(CommonPackages.ID_XVER, CommonPackages.VER_XVER)) {
        NpmPackage npm = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION).loadPackage(CommonPackages.ID_XVER, CommonPackages.VER_XVER);
        TestingUtilities.context().loadFromPackage(npm, new TestLoader(new String[] { "StructureDefinition" }), new String[] { "StructureDefinition" });
    }
    pu.setXver(new XVerExtensionManager(TestingUtilities.context()));
    if (test.isSort()) {
        List<String> errors = new ArrayList<String>();
        int lastCount = output.getDifferential().getElement().size();
        pu.sortDifferential(base, output, test.getSource().getName(), errors, false);
        if (errors.size() > 0)
            throw new FHIRException("Sort failed: " + errors.toString());
    }
    try {
        messages.clear();
        pu.generateSnapshot(base, output, test.getSource().getUrl(), "http://test.org/profile", test.getSource().getName());
        List<ValidationMessage> ml = new ArrayList<>();
        for (ValidationMessage vm : messages) {
            if (vm.getLevel() == IssueSeverity.ERROR) {
                ml.add(vm);
            }
        }
        if (ml.size() > 0) {
            throw new FHIRException("Snapshot Generation failed: " + ml.toString());
        }
    } catch (Throwable e) {
        System.out.println("\r\nException: " + e.getMessage());
        throw e;
    }
    if (output.getDifferential().hasElement()) {
        RenderingContext rc = new RenderingContext(TestingUtilities.context(), null, null, "http://hl7.org/fhir", "", null, ResourceRendererMode.END_USER);
        rc.setDestDir(Utilities.path("[tmp]", "snapshot"));
        rc.setProfileUtilities(new ProfileUtilities(TestingUtilities.context(), null, new TestPKP()));
        RendererFactory.factory(output, rc).render(output);
    }
    if (!fail) {
        test.output = output;
        TestingUtilities.context().cacheResource(output);
        File dst = new File(TestingUtilities.tempFile("snapshot", test.getId() + "-expected.xml"));
        if (dst.exists())
            dst.delete();
        IOUtils.copy(TestingUtilities.loadTestResourceStream("r5", "snapshot-generation", test.getId() + "-expected.xml"), new FileOutputStream(dst));
        new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(TestingUtilities.tempFile("snapshot", test.getId() + "-actual.xml")), output);
        StructureDefinition t1 = test.expected.copy();
        t1.setText(null);
        StructureDefinition t2 = test.output.copy();
        t2.setText(null);
        Assertions.assertTrue(t1.equalsDeep(t2), "Output does not match expected");
    }
}

Example 12 with FilesystemPackageCacheManager

use of org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager in project org.hl7.fhir.core by hapifhir.

the class StructureMapUtilitiesTest method setUp.

@BeforeAll
public static void setUp() throws Exception {
    FilesystemPackageCacheManager pcm = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION);
    context = SimpleWorkerContext.fromPackage(pcm.loadPackage("hl7.fhir.r4.core", "4.0.1"));
}

Example 13 with FilesystemPackageCacheManager

use of org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager in project org.hl7.fhir.core by hapifhir.

the class XmlParserTests method setUp.

@BeforeAll
public static void setUp() throws Exception {
    FilesystemPackageCacheManager pcm = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION);
    context = SimpleWorkerContext.fromPackage(pcm.loadPackage("hl7.fhir.r4.core", "4.0.1"));
    fp = new FHIRPathEngine(context);
    context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "any.xml"), "any.xml", null);
    context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "ii.xml"), "ii.xml", null);
    context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "cd.xml"), "cd.xml", null);
    context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "ce.xml"), "ce.xml", null);
    context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "ed.xml"), "ed.xml", null);
    context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "st.xml"), "st.xml", null);
    context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "cda.xml"), "cda.xml", null);
    for (StructureDefinition sd : context.getStructures()) {
        if (!sd.hasSnapshot()) {
            System.out.println("generate snapshot for " + sd.getUrl());
            context.generateSnapshot(sd, true);
        }
    }
}

Example 14 with FilesystemPackageCacheManager

use of org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager in project org.hl7.fhir.core by hapifhir.

the class TestingUtilities method getWorkerContext.

public static IWorkerContext getWorkerContext(String version) {
    FilesystemPackageCacheManager pcm;
    try {
        pcm = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION);
        IWorkerContext fcontext = getWorkerContext(pcm.loadPackage(VersionUtilities.packageForVersion(version), version));
        fcontext.setUcumService(new UcumEssenceService(TestingUtilities.loadTestResourceStream("ucum", "ucum-essence.xml")));
        fcontext.setExpansionProfile(new Parameters());
        if (!fcontext.hasPackage("hl7.terminology", null)) {
            NpmPackage utg = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION).loadPackage("hl7.terminology");
            System.out.println("Loading THO: " + utg.name() + "#" + utg.version());
            fcontext.loadFromPackage(utg, new TestPackageLoader(new String[] { "CodeSystem", "ValueSet" }));
        }
        return fcontext;
    } catch (Exception e) {
        e.printStackTrace();
        throw new Error(e);
    }
}

Example 15 with FilesystemPackageCacheManager

use of org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager in project org.hl7.fhir.core by hapifhir.

the class R3R4ConversionTests method checkLoad.

/*
   * Supporting multiple versions at once is a little tricky. We're going to have
   * 2 contexts: - an R3 context which is used to read/write R3 instances - an R4
   * context which is used to perform the transforms
   *
   * R3 structure definitions are cloned into R3 context with a modified URL (as
   * 3.0/)
   *
   */
private void checkLoad() throws IOException, FHIRException, Exception {
    if (contextR3 != null)
        return;
    pcm = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION);
    R3ToR4Loader ldr = (R3ToR4Loader) new R3ToR4Loader().setPatchUrls(true).setKillPrimitives(true);
    System.out.println("loading R3");
    contextR3 = new SimpleWorkerContext();
    contextR3.setAllowLoadingDuplicates(true);
    contextR3.setOverrideVersionNs("http://hl7.org/fhir/3.0/StructureDefinition");
    contextR3.loadFromPackage(pcm.loadPackage("hl7.fhir.core", "3.0.1"), ldr, new String[] {});
    System.out.println("loading R4");
    contextR4 = new SimpleWorkerContext();
    contextR4 = SimpleWorkerContext.fromPackage(pcm.loadPackage("hl7.fhir.core", "4.0.0"));
    contextR4.setCanRunWithoutTerminology(true);
    for (StructureDefinition sd : contextR3.allStructures()) {
        StructureDefinition sdn = sd.copy();
        sdn.getExtension().clear();
        contextR4.cacheResource(sdn);
    }
    for (StructureDefinition sd : contextR4.allStructures()) {
        if (sd.getKind() == StructureDefinitionKind.PRIMITIVETYPE) {
            contextR3.cacheResource(sd);
            StructureDefinition sdn = sd.copy();
            sdn.setUrl(sdn.getUrl().replace("http://hl7.org/fhir/", "http://hl7.org/fhir/3.0/"));
            sdn.addExtension().setUrl("http://hl7.org/fhir/StructureDefinition/elementdefinition-namespace").setValue(new UriType("http://hl7.org/fhir"));
            contextR3.cacheResource(sdn);
            contextR4.cacheResource(sdn);
        }
    }
    contextR3.setExpansionProfile(new org.hl7.fhir.r4.model.Parameters());
    contextR4.setExpansionProfile(new org.hl7.fhir.r4.model.Parameters());
    contextR3.setName("R3");
    contextR4.setName("R4");
    // contextR4.setValidatorFactory(new InstanceValidatorFactory());
    // TODO: this has to be R% now...    contextR4.setValidatorFactory(new InstanceValidatorFactory());
    System.out.println("loading Maps");
    loadLib(Utilities.path(TestingUtilities.home(), "implementations", "r3maps", "R4toR3"));
    loadLib(Utilities.path(TestingUtilities.home(), "implementations", "r3maps", "R3toR4"));
    System.out.println("loaded");
}