Examples with FilesystemPackageCacheManager org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager used on opensource projects

Example 6 with FilesystemPackageCacheManager

use of org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager in project org.hl7.fhir.core by hapifhir.

the class SnapShotGenerationTests method testGen.

private void testGen(boolean fail, TestDetails test, SnapShotGenerationTestsContext context) throws Exception {
    if (!Utilities.noString(test.register)) {
        List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
        ProfileUtilities pu = new ProfileUtilities(TestingUtilities.getSharedWorkerContext(), messages, null);
        pu.setNewSlicingProcessing(true);
        for (StructureDefinition sd : test.included) {
            pu.setIds(sd, false);
        }
        for (StructureDefinition sd : test.included) {
            if (!TestingUtilities.getSharedWorkerContext().hasResource(StructureDefinition.class, sd.getUrl())) {
                TestingUtilities.getSharedWorkerContext().cacheResource(sd);
            }
        }
        StructureDefinition base = TestingUtilities.getSharedWorkerContext().fetchResource(StructureDefinition.class, test.included.get(0).getBaseDefinition());
        if (base != null) {
            pu.generateSnapshot(base, test.included.get(0), test.included.get(0).getUrl(), "http://test.org/profile", test.included.get(0).getName());
        }
        int ec = 0;
        for (ValidationMessage vm : messages) {
            if (vm.getLevel() == IssueSeverity.ERROR) {
                System.out.println(vm.summary());
                ec++;
            }
        }
        if (ec > 0)
            throw new FHIRException("register gen failed: " + messages.toString());
    }
    StructureDefinition base = getSD(test.getSource().getBaseDefinition(), context);
    if (!base.getUrl().equals(test.getSource().getBaseDefinition()))
        throw new Exception("URL mismatch on base: " + base.getUrl() + " wanting " + test.getSource().getBaseDefinition());
    StructureDefinition output = test.getSource().copy();
    ProfileUtilities pu = new ProfileUtilities(TestingUtilities.getSharedWorkerContext(), messages, new TestPKP());
    pu.setNewSlicingProcessing(test.isNewSliceProcessing());
    pu.setThrowException(false);
    pu.setDebug(test.isDebug());
    pu.setIds(test.getSource(), false);
    if (!TestingUtilities.getSharedWorkerContext().hasPackage(CommonPackages.ID_XVER, CommonPackages.VER_XVER)) {
        NpmPackage npm = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION).loadPackage(CommonPackages.ID_XVER, CommonPackages.VER_XVER);
        TestingUtilities.getSharedWorkerContext().loadFromPackage(npm, new TestPackageLoader(new String[] { "StructureDefinition" }), new String[] { "StructureDefinition" });
    }
    pu.setXver(new XVerExtensionManager(TestingUtilities.getSharedWorkerContext()));
    if (test.isSort()) {
        List<String> errors = new ArrayList<String>();
        int lastCount = output.getDifferential().getElement().size();
        pu.sortDifferential(base, output, test.getSource().getName(), errors, false);
        if (errors.size() > 0)
            throw new FHIRException("Sort failed: " + errors.toString());
    }
    try {
        messages.clear();
        pu.generateSnapshot(base, output, test.getSource().getUrl(), "http://test.org/profile", test.getSource().getName());
        List<ValidationMessage> ml = new ArrayList<>();
        for (ValidationMessage vm : messages) {
            if (vm.getLevel() == IssueSeverity.ERROR) {
                ml.add(vm);
            }
        }
        if (ml.size() > 0) {
            throw new FHIRException("Snapshot Generation failed: " + ml.toString());
        }
    } catch (Throwable e) {
        System.out.println("\r\nException: " + e.getMessage());
        throw e;
    }
    if (output.getDifferential().hasElement()) {
        RenderingContext rc = new RenderingContext(TestingUtilities.getSharedWorkerContext(), null, null, "http://hl7.org/fhir", "", null, ResourceRendererMode.END_USER);
        rc.setDestDir(Utilities.path("[tmp]", "snapshot"));
        rc.setProfileUtilities(new ProfileUtilities(TestingUtilities.getSharedWorkerContext(), null, new TestPKP()));
        RendererFactory.factory(output, rc).render(output);
    }
    if (!fail) {
        test.output = output;
        TestingUtilities.getSharedWorkerContext().cacheResource(output);
        File dst = new File(TestingUtilities.tempFile("snapshot", test.getId() + "-expected.xml"));
        if (dst.exists())
            dst.delete();
        IOUtils.copy(TestingUtilities.loadTestResourceStream("r5", "snapshot-generation", test.getId() + "-expected.xml"), new FileOutputStream(dst));
        new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(TestingUtilities.tempFile("snapshot", test.getId() + "-actual.xml")), output);
        StructureDefinition t1 = test.expected.copy();
        t1.setText(null);
        StructureDefinition t2 = test.output.copy();
        t2.setText(null);
        Assertions.assertTrue(t1.equalsDeep(t2), "Output does not match expected");
    }
}

Example 7 with FilesystemPackageCacheManager

use of org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager in project org.hl7.fhir.core by hapifhir.

the class ParsingTests method data.

public static Stream<Arguments> data() throws ParserConfigurationException, IOException, FHIRFormatError, SAXException {
    FilesystemPackageCacheManager pcm = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION);
    npm = pcm.loadPackage("hl7.fhir.r5.examples", "5.0.0");
    List<Arguments> objects = new ArrayList<>();
    List<String> names = npm.list("package");
    for (String n : names) {
        if (!n.contains("manifest.json") && !n.contains("xver-") && !n.contains("uml.json") && !n.contains("package-min-ver.json")) {
            objects.add(Arguments.of(n));
        }
    }
    return objects.stream();
}

Example 8 with FilesystemPackageCacheManager

use of org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager in project org.hl7.fhir.core by hapifhir.

the class XmlParserTests method setUp.

@BeforeAll
public static void setUp() throws Exception {
    FilesystemPackageCacheManager pcm = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION);
    context = TestingUtilities.getWorkerContext(pcm.loadPackage("hl7.fhir.r4.core", "4.0.1"));
    fp = new FHIRPathEngine(context);
    context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "any.xml"), "any.xml", null);
    context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "ii.xml"), "ii.xml", null);
    context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "cd.xml"), "cd.xml", null);
    context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "ce.xml"), "ce.xml", null);
    context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "ed.xml"), "ed.xml", null);
    context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "st.xml"), "st.xml", null);
    context.loadFromFile(TestingUtilities.loadTestResourceStream("validator", "cda", "cda.xml"), "cda.xml", null);
    for (StructureDefinition sd : context.getStructures()) {
        if (!sd.hasSnapshot()) {
            System.out.println("generate snapshot for " + sd.getUrl());
            context.generateSnapshot(sd, true);
        }
    }
}

Example 9 with FilesystemPackageCacheManager

use of org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager in project org.hl7.fhir.core by hapifhir.

the class PackageCacheTests method testPath.

@Test
public void testPath() throws IOException {
    FilesystemPackageCacheManager cache = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION);
    cache.clear();
    List<String> list = cache.listPackages();
    if (!list.isEmpty()) {
        System.out.println("remaining packages: " + list.toString());
    }
    Assertions.assertTrue(list.isEmpty(), "List should be true but is " + list.toString());
    NpmPackage npm = cache.loadPackage(CommonPackages.ID_PUBPACK, CommonPackages.VER_PUBPACK);
    npm.loadAllFiles();
    Assertions.assertNotNull(npm);
    File dir = new File(Utilities.path("[tmp]", "cache"));
    if (dir.exists()) {
        Utilities.clearDirectory(dir.getAbsolutePath());
    } else {
        Utilities.createDirectory(dir.getAbsolutePath());
    }
    npm.save(dir);
    NpmPackage npm2 = cache.loadPackage(CommonPackages.ID_PUBPACK, "file:" + dir.getAbsolutePath());
    Assertions.assertNotNull(npm2);
    list = cache.listPackages();
    Assertions.assertFalse(list.isEmpty());
}

Example 10 with FilesystemPackageCacheManager

use of org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager in project org.hl7.fhir.core by hapifhir.

the class CDARoundTripTests method setUp.

@BeforeAll
public void setUp() throws Exception {
    context = new SimpleWorkerContext();
    FilesystemPackageCacheManager pcm = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION);
    context.loadFromPackage(pcm.loadPackage("hl7.fhir.core", "current"), null, "StructureDefinition");
    context.loadFromPackage(pcm.loadPackage("hl7.fhir.cda", "current"), null, "StructureDefinition");
}