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Example 1 with TestPackageLoader

use of org.hl7.fhir.r5.test.utils.TestPackageLoader in project org.hl7.fhir.core by hapifhir.

the class SnapShotGenerationTests method testGen.

private void testGen(boolean fail, TestDetails test, SnapShotGenerationTestsContext context) throws Exception {
    if (!Utilities.noString(test.register)) {
        List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
        ProfileUtilities pu = new ProfileUtilities(TestingUtilities.getSharedWorkerContext(), messages, null);
        pu.setNewSlicingProcessing(true);
        for (StructureDefinition sd : test.included) {
            pu.setIds(sd, false);
        }
        for (StructureDefinition sd : test.included) {
            if (!TestingUtilities.getSharedWorkerContext().hasResource(StructureDefinition.class, sd.getUrl())) {
                TestingUtilities.getSharedWorkerContext().cacheResource(sd);
            }
        }
        StructureDefinition base = TestingUtilities.getSharedWorkerContext().fetchResource(StructureDefinition.class, test.included.get(0).getBaseDefinition());
        if (base != null) {
            pu.generateSnapshot(base, test.included.get(0), test.included.get(0).getUrl(), "http://test.org/profile", test.included.get(0).getName());
        }
        int ec = 0;
        for (ValidationMessage vm : messages) {
            if (vm.getLevel() == IssueSeverity.ERROR) {
                System.out.println(vm.summary());
                ec++;
            }
        }
        if (ec > 0)
            throw new FHIRException("register gen failed: " + messages.toString());
    }
    StructureDefinition base = getSD(test.getSource().getBaseDefinition(), context);
    if (!base.getUrl().equals(test.getSource().getBaseDefinition()))
        throw new Exception("URL mismatch on base: " + base.getUrl() + " wanting " + test.getSource().getBaseDefinition());
    StructureDefinition output = test.getSource().copy();
    ProfileUtilities pu = new ProfileUtilities(TestingUtilities.getSharedWorkerContext(), messages, new TestPKP());
    pu.setNewSlicingProcessing(test.isNewSliceProcessing());
    pu.setThrowException(false);
    pu.setDebug(test.isDebug());
    pu.setIds(test.getSource(), false);
    if (!TestingUtilities.getSharedWorkerContext().hasPackage(CommonPackages.ID_XVER, CommonPackages.VER_XVER)) {
        NpmPackage npm = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION).loadPackage(CommonPackages.ID_XVER, CommonPackages.VER_XVER);
        TestingUtilities.getSharedWorkerContext().loadFromPackage(npm, new TestPackageLoader(new String[] { "StructureDefinition" }), new String[] { "StructureDefinition" });
    }
    pu.setXver(new XVerExtensionManager(TestingUtilities.getSharedWorkerContext()));
    if (test.isSort()) {
        List<String> errors = new ArrayList<String>();
        int lastCount = output.getDifferential().getElement().size();
        pu.sortDifferential(base, output, test.getSource().getName(), errors, false);
        if (errors.size() > 0)
            throw new FHIRException("Sort failed: " + errors.toString());
    }
    try {
        messages.clear();
        pu.generateSnapshot(base, output, test.getSource().getUrl(), "http://test.org/profile", test.getSource().getName());
        List<ValidationMessage> ml = new ArrayList<>();
        for (ValidationMessage vm : messages) {
            if (vm.getLevel() == IssueSeverity.ERROR) {
                ml.add(vm);
            }
        }
        if (ml.size() > 0) {
            throw new FHIRException("Snapshot Generation failed: " + ml.toString());
        }
    } catch (Throwable e) {
        System.out.println("\r\nException: " + e.getMessage());
        throw e;
    }
    if (output.getDifferential().hasElement()) {
        RenderingContext rc = new RenderingContext(TestingUtilities.getSharedWorkerContext(), null, null, "http://hl7.org/fhir", "", null, ResourceRendererMode.END_USER);
        rc.setDestDir(Utilities.path("[tmp]", "snapshot"));
        rc.setProfileUtilities(new ProfileUtilities(TestingUtilities.getSharedWorkerContext(), null, new TestPKP()));
        RendererFactory.factory(output, rc).render(output);
    }
    if (!fail) {
        test.output = output;
        TestingUtilities.getSharedWorkerContext().cacheResource(output);
        File dst = new File(TestingUtilities.tempFile("snapshot", test.getId() + "-expected.xml"));
        if (dst.exists())
            dst.delete();
        IOUtils.copy(TestingUtilities.loadTestResourceStream("r5", "snapshot-generation", test.getId() + "-expected.xml"), new FileOutputStream(dst));
        new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(TestingUtilities.tempFile("snapshot", test.getId() + "-actual.xml")), output);
        StructureDefinition t1 = test.expected.copy();
        t1.setText(null);
        StructureDefinition t2 = test.output.copy();
        t2.setText(null);
        Assertions.assertTrue(t1.equalsDeep(t2), "Output does not match expected");
    }
}
Also used : FilesystemPackageCacheManager(org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager) RenderingContext(org.hl7.fhir.r5.renderers.utils.RenderingContext) XmlParser(org.hl7.fhir.r5.formats.XmlParser) ValidationMessage(org.hl7.fhir.utilities.validation.ValidationMessage) ArrayList(java.util.ArrayList) FHIRException(org.hl7.fhir.exceptions.FHIRException) FileNotFoundException(java.io.FileNotFoundException) SAXException(org.xml.sax.SAXException) NotImplementedException(org.apache.commons.lang3.NotImplementedException) DefinitionException(org.hl7.fhir.exceptions.DefinitionException) PathEngineException(org.hl7.fhir.exceptions.PathEngineException) IOException(java.io.IOException) ParserConfigurationException(javax.xml.parsers.ParserConfigurationException) FHIRException(org.hl7.fhir.exceptions.FHIRException) StructureDefinition(org.hl7.fhir.r5.model.StructureDefinition) TestPackageLoader(org.hl7.fhir.r5.test.utils.TestPackageLoader) ProfileUtilities(org.hl7.fhir.r5.conformance.ProfileUtilities) NpmPackage(org.hl7.fhir.utilities.npm.NpmPackage) XVerExtensionManager(org.hl7.fhir.r5.utils.XVerExtensionManager) FileOutputStream(java.io.FileOutputStream) File(java.io.File)

Example 2 with TestPackageLoader

use of org.hl7.fhir.r5.test.utils.TestPackageLoader in project org.hl7.fhir.core by hapifhir.

the class TestingUtilities method getWorkerContext.

public static IWorkerContext getWorkerContext(String version) {
    FilesystemPackageCacheManager pcm;
    try {
        pcm = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION);
        IWorkerContext fcontext = getWorkerContext(pcm.loadPackage(VersionUtilities.packageForVersion(version), version));
        fcontext.setUcumService(new UcumEssenceService(TestingUtilities.loadTestResourceStream("ucum", "ucum-essence.xml")));
        fcontext.setExpansionProfile(new Parameters());
        if (!fcontext.hasPackage("hl7.terminology", null)) {
            NpmPackage utg = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION).loadPackage("hl7.terminology");
            System.out.println("Loading THO: " + utg.name() + "#" + utg.version());
            fcontext.loadFromPackage(utg, new TestPackageLoader(new String[] { "CodeSystem", "ValueSet" }));
        }
        return fcontext;
    } catch (Exception e) {
        e.printStackTrace();
        throw new Error(e);
    }
}
Also used : UcumEssenceService(org.fhir.ucum.UcumEssenceService) FilesystemPackageCacheManager(org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager) IWorkerContext(org.hl7.fhir.r5.context.IWorkerContext) Parameters(org.hl7.fhir.r5.model.Parameters) NpmPackage(org.hl7.fhir.utilities.npm.NpmPackage) JsonSyntaxException(com.google.gson.JsonSyntaxException) IOException(java.io.IOException) FileNotFoundException(java.io.FileNotFoundException)

Aggregations

FileNotFoundException (java.io.FileNotFoundException)2 IOException (java.io.IOException)2 FilesystemPackageCacheManager (org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager)2 NpmPackage (org.hl7.fhir.utilities.npm.NpmPackage)2 JsonSyntaxException (com.google.gson.JsonSyntaxException)1 File (java.io.File)1 FileOutputStream (java.io.FileOutputStream)1 ArrayList (java.util.ArrayList)1 ParserConfigurationException (javax.xml.parsers.ParserConfigurationException)1 NotImplementedException (org.apache.commons.lang3.NotImplementedException)1 UcumEssenceService (org.fhir.ucum.UcumEssenceService)1 DefinitionException (org.hl7.fhir.exceptions.DefinitionException)1 FHIRException (org.hl7.fhir.exceptions.FHIRException)1 PathEngineException (org.hl7.fhir.exceptions.PathEngineException)1 ProfileUtilities (org.hl7.fhir.r5.conformance.ProfileUtilities)1 IWorkerContext (org.hl7.fhir.r5.context.IWorkerContext)1 XmlParser (org.hl7.fhir.r5.formats.XmlParser)1 Parameters (org.hl7.fhir.r5.model.Parameters)1 StructureDefinition (org.hl7.fhir.r5.model.StructureDefinition)1 RenderingContext (org.hl7.fhir.r5.renderers.utils.RenderingContext)1