use of org.hl7.fhir.r5.utils.XVerExtensionManager in project org.hl7.fhir.core by hapifhir.
the class SimpleWorkerContext method generateSnapshot.
@Override
public void generateSnapshot(StructureDefinition p, boolean logical) throws DefinitionException, FHIRException {
if ((!p.hasSnapshot() || isProfileNeedsRegenerate(p)) && (logical || p.getKind() != StructureDefinitionKind.LOGICAL)) {
if (!p.hasBaseDefinition())
throw new DefinitionException(formatMessage(I18nConstants.PROFILE___HAS_NO_BASE_AND_NO_SNAPSHOT, p.getName(), p.getUrl()));
StructureDefinition sd = fetchResource(StructureDefinition.class, p.getBaseDefinition());
if (sd == null && "http://hl7.org/fhir/StructureDefinition/Base".equals(p.getBaseDefinition())) {
sd = ProfileUtilities.makeBaseDefinition(p.getFhirVersion());
}
if (sd == null) {
throw new DefinitionException(formatMessage(I18nConstants.PROFILE___BASE__COULD_NOT_BE_RESOLVED, p.getName(), p.getUrl(), p.getBaseDefinition()));
}
List<ValidationMessage> msgs = new ArrayList<ValidationMessage>();
List<String> errors = new ArrayList<String>();
ProfileUtilities pu = new ProfileUtilities(this, msgs, this);
pu.setAutoFixSliceNames(true);
pu.setThrowException(false);
if (xverManager == null) {
xverManager = new XVerExtensionManager(this);
}
pu.setXver(xverManager);
if (sd.getDerivation() == TypeDerivationRule.CONSTRAINT) {
pu.sortDifferential(sd, p, p.getUrl(), errors, true);
}
pu.setDebug(false);
for (String err : errors) msgs.add(new ValidationMessage(Source.ProfileValidator, IssueType.EXCEPTION, p.getUserString("path"), "Error sorting Differential: " + err, ValidationMessage.IssueSeverity.ERROR));
pu.generateSnapshot(sd, p, p.getUrl(), Utilities.extractBaseUrl(sd.getUserString("path")), p.getName());
for (ValidationMessage msg : msgs) {
if ((!ignoreProfileErrors && msg.getLevel() == ValidationMessage.IssueSeverity.ERROR) || msg.getLevel() == ValidationMessage.IssueSeverity.FATAL)
throw new DefinitionException(formatMessage(I18nConstants.PROFILE___ELEMENT__ERROR_GENERATING_SNAPSHOT_, p.getName(), p.getUrl(), msg.getLocation(), msg.getMessage()));
}
if (!p.hasSnapshot())
throw new FHIRException(formatMessage(I18nConstants.PROFILE___ERROR_GENERATING_SNAPSHOT, p.getName(), p.getUrl()));
pu = null;
}
}
use of org.hl7.fhir.r5.utils.XVerExtensionManager in project org.hl7.fhir.core by hapifhir.
the class SimpleWorkerContext method generateSnapshot.
@Override
public void generateSnapshot(StructureDefinition p, boolean logical) throws FHIRException {
if ((!p.hasSnapshot() || isProfileNeedsRegenerate(p)) && (logical || p.getKind() != StructureDefinitionKind.LOGICAL)) {
if (!p.hasBaseDefinition())
throw new DefinitionException(formatMessage(I18nConstants.PROFILE___HAS_NO_BASE_AND_NO_SNAPSHOT, p.getName(), p.getUrl()));
StructureDefinition sd = fetchResource(StructureDefinition.class, p.getBaseDefinition());
if (sd == null && "http://hl7.org/fhir/StructureDefinition/Base".equals(p.getBaseDefinition())) {
sd = ProfileUtilities.makeBaseDefinition(p.getFhirVersion());
}
if (sd == null) {
throw new DefinitionException(formatMessage(I18nConstants.PROFILE___BASE__COULD_NOT_BE_RESOLVED, p.getName(), p.getUrl(), p.getBaseDefinition()));
}
List<ValidationMessage> msgs = new ArrayList<ValidationMessage>();
List<String> errors = new ArrayList<String>();
ProfileUtilities pu = new ProfileUtilities(this, msgs, this);
pu.setAutoFixSliceNames(true);
pu.setThrowException(false);
if (xverManager == null) {
xverManager = new XVerExtensionManager(this);
}
pu.setXver(xverManager);
if (sd.getDerivation() == TypeDerivationRule.CONSTRAINT) {
pu.sortDifferential(sd, p, p.getUrl(), errors, true);
}
pu.setDebug(false);
for (String err : errors) msgs.add(new ValidationMessage(Source.ProfileValidator, IssueType.EXCEPTION, p.getUserString("path"), "Error sorting Differential: " + err, ValidationMessage.IssueSeverity.ERROR));
pu.generateSnapshot(sd, p, p.getUrl(), sd.getUserString("webroot"), p.getName());
for (ValidationMessage msg : msgs) {
if ((!ignoreProfileErrors && msg.getLevel() == ValidationMessage.IssueSeverity.ERROR) || msg.getLevel() == ValidationMessage.IssueSeverity.FATAL)
throw new DefinitionException(formatMessage(I18nConstants.PROFILE___ELEMENT__ERROR_GENERATING_SNAPSHOT_, p.getName(), p.getUrl(), msg.getLocation(), msg.getMessage()));
}
if (!p.hasSnapshot())
throw new FHIRException(formatMessage(I18nConstants.PROFILE___ERROR_GENERATING_SNAPSHOT, p.getName(), p.getUrl()));
pu = null;
}
}
use of org.hl7.fhir.r5.utils.XVerExtensionManager in project org.hl7.fhir.core by hapifhir.
the class SnapShotGenerationTests method testGen.
private void testGen(boolean fail, TestDetails test, SnapShotGenerationTestsContext context) throws Exception {
if (!Utilities.noString(test.register)) {
List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
ProfileUtilities pu = new ProfileUtilities(TestingUtilities.getSharedWorkerContext(), messages, null);
pu.setNewSlicingProcessing(true);
for (StructureDefinition sd : test.included) {
pu.setIds(sd, false);
}
for (StructureDefinition sd : test.included) {
if (!TestingUtilities.getSharedWorkerContext().hasResource(StructureDefinition.class, sd.getUrl())) {
TestingUtilities.getSharedWorkerContext().cacheResource(sd);
}
}
StructureDefinition base = TestingUtilities.getSharedWorkerContext().fetchResource(StructureDefinition.class, test.included.get(0).getBaseDefinition());
if (base != null) {
pu.generateSnapshot(base, test.included.get(0), test.included.get(0).getUrl(), "http://test.org/profile", test.included.get(0).getName());
}
int ec = 0;
for (ValidationMessage vm : messages) {
if (vm.getLevel() == IssueSeverity.ERROR) {
System.out.println(vm.summary());
ec++;
}
}
if (ec > 0)
throw new FHIRException("register gen failed: " + messages.toString());
}
StructureDefinition base = getSD(test.getSource().getBaseDefinition(), context);
if (!base.getUrl().equals(test.getSource().getBaseDefinition()))
throw new Exception("URL mismatch on base: " + base.getUrl() + " wanting " + test.getSource().getBaseDefinition());
StructureDefinition output = test.getSource().copy();
ProfileUtilities pu = new ProfileUtilities(TestingUtilities.getSharedWorkerContext(), messages, new TestPKP());
pu.setNewSlicingProcessing(test.isNewSliceProcessing());
pu.setThrowException(false);
pu.setDebug(test.isDebug());
pu.setIds(test.getSource(), false);
if (!TestingUtilities.getSharedWorkerContext().hasPackage(CommonPackages.ID_XVER, CommonPackages.VER_XVER)) {
NpmPackage npm = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION).loadPackage(CommonPackages.ID_XVER, CommonPackages.VER_XVER);
TestingUtilities.getSharedWorkerContext().loadFromPackage(npm, new TestPackageLoader(new String[] { "StructureDefinition" }), new String[] { "StructureDefinition" });
}
pu.setXver(new XVerExtensionManager(TestingUtilities.getSharedWorkerContext()));
if (test.isSort()) {
List<String> errors = new ArrayList<String>();
int lastCount = output.getDifferential().getElement().size();
pu.sortDifferential(base, output, test.getSource().getName(), errors, false);
if (errors.size() > 0)
throw new FHIRException("Sort failed: " + errors.toString());
}
try {
messages.clear();
pu.generateSnapshot(base, output, test.getSource().getUrl(), "http://test.org/profile", test.getSource().getName());
List<ValidationMessage> ml = new ArrayList<>();
for (ValidationMessage vm : messages) {
if (vm.getLevel() == IssueSeverity.ERROR) {
ml.add(vm);
}
}
if (ml.size() > 0) {
throw new FHIRException("Snapshot Generation failed: " + ml.toString());
}
} catch (Throwable e) {
System.out.println("\r\nException: " + e.getMessage());
throw e;
}
if (output.getDifferential().hasElement()) {
RenderingContext rc = new RenderingContext(TestingUtilities.getSharedWorkerContext(), null, null, "http://hl7.org/fhir", "", null, ResourceRendererMode.END_USER);
rc.setDestDir(Utilities.path("[tmp]", "snapshot"));
rc.setProfileUtilities(new ProfileUtilities(TestingUtilities.getSharedWorkerContext(), null, new TestPKP()));
RendererFactory.factory(output, rc).render(output);
}
if (!fail) {
test.output = output;
TestingUtilities.getSharedWorkerContext().cacheResource(output);
File dst = new File(TestingUtilities.tempFile("snapshot", test.getId() + "-expected.xml"));
if (dst.exists())
dst.delete();
IOUtils.copy(TestingUtilities.loadTestResourceStream("r5", "snapshot-generation", test.getId() + "-expected.xml"), new FileOutputStream(dst));
new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(TestingUtilities.tempFile("snapshot", test.getId() + "-actual.xml")), output);
StructureDefinition t1 = test.expected.copy();
t1.setText(null);
StructureDefinition t2 = test.output.copy();
t2.setText(null);
Assertions.assertTrue(t1.equalsDeep(t2), "Output does not match expected");
}
}
use of org.hl7.fhir.r5.utils.XVerExtensionManager in project org.hl7.fhir.core by hapifhir.
the class ProfileDrivenRenderer method splitExtensions.
private List<PropertyWrapper> splitExtensions(StructureDefinition profile, List<PropertyWrapper> children) throws UnsupportedEncodingException, IOException, FHIRException {
List<PropertyWrapper> results = new ArrayList<PropertyWrapper>();
Map<String, PropertyWrapper> map = new HashMap<String, PropertyWrapper>();
for (PropertyWrapper p : children) if (p.getName().equals("extension") || p.getName().equals("modifierExtension")) {
// we're going to split these up, and create a property for each url
if (p.hasValues()) {
for (BaseWrapper v : p.getValues()) {
Extension ex = (Extension) v.getBase();
String url = ex.getUrl();
StructureDefinition ed = getContext().getWorker().fetchResource(StructureDefinition.class, url);
if (ed == null) {
if (xverManager == null) {
xverManager = new XVerExtensionManager(context.getWorker());
}
if (xverManager.matchingUrl(url) && xverManager.status(url) == XVerExtensionStatus.Valid) {
ed = xverManager.makeDefinition(url);
getContext().getWorker().generateSnapshot(ed);
getContext().getWorker().cacheResource(ed);
}
}
if (p.getName().equals("modifierExtension") && ed == null) {
throw new DefinitionException("Unknown modifier extension " + url);
}
PropertyWrapper pe = map.get(p.getName() + "[" + url + "]");
if (pe == null) {
if (ed == null) {
if (url.startsWith("http://hl7.org/fhir") && !url.startsWith("http://hl7.org/fhir/us")) {
throw new DefinitionException("unknown extension " + url);
}
// System.out.println("unknown extension "+url);
pe = new PropertyWrapperDirect(this.context, new Property(p.getName() + "[" + url + "]", p.getTypeCode(), p.getDefinition(), p.getMinCardinality(), p.getMaxCardinality(), ex), null);
} else {
ElementDefinition def = ed.getSnapshot().getElement().get(0);
pe = new PropertyWrapperDirect(this.context, new Property(p.getName() + "[" + url + "]", "Extension", def.getDefinition(), def.getMin(), def.getMax().equals("*") ? Integer.MAX_VALUE : Integer.parseInt(def.getMax()), ex), ed.getSnapshot().getElementFirstRep());
((PropertyWrapperDirect) pe).getWrapped().setStructure(ed);
}
results.add(pe);
} else
pe.getValues().add(v);
}
}
} else
results.add(p);
return results;
}
use of org.hl7.fhir.r5.utils.XVerExtensionManager in project org.hl7.fhir.core by hapifhir.
the class SnapShotGenerationTests method testGen.
private void testGen(boolean fail, TestDetails test, SnapShotGenerationTestsContext context) throws Exception {
if (!Utilities.noString(test.register)) {
List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
ProfileUtilities pu = new ProfileUtilities(TestingUtilities.context(), messages, null);
pu.setNewSlicingProcessing(true);
for (StructureDefinition sd : test.included) {
pu.setIds(sd, false);
}
for (StructureDefinition sd : test.included) {
if (!TestingUtilities.context().hasResource(StructureDefinition.class, sd.getUrl())) {
TestingUtilities.context().cacheResource(sd);
}
}
StructureDefinition base = TestingUtilities.context().fetchResource(StructureDefinition.class, test.included.get(0).getBaseDefinition());
if (base != null) {
pu.generateSnapshot(base, test.included.get(0), test.included.get(0).getUrl(), "http://test.org/profile", test.included.get(0).getName());
}
int ec = 0;
for (ValidationMessage vm : messages) {
if (vm.getLevel() == IssueSeverity.ERROR) {
System.out.println(vm.summary());
ec++;
}
}
if (ec > 0)
throw new FHIRException("register gen failed: " + messages.toString());
}
StructureDefinition base = getSD(test.getSource().getBaseDefinition(), context);
if (!base.getUrl().equals(test.getSource().getBaseDefinition()))
throw new Exception("URL mismatch on base: " + base.getUrl() + " wanting " + test.getSource().getBaseDefinition());
StructureDefinition output = test.getSource().copy();
ProfileUtilities pu = new ProfileUtilities(TestingUtilities.context(), messages, new TestPKP());
pu.setNewSlicingProcessing(test.isNewSliceProcessing());
pu.setThrowException(false);
pu.setDebug(test.isDebug());
pu.setIds(test.getSource(), false);
if (!TestingUtilities.context().hasPackage(CommonPackages.ID_XVER, CommonPackages.VER_XVER)) {
NpmPackage npm = new FilesystemPackageCacheManager(true, ToolsVersion.TOOLS_VERSION).loadPackage(CommonPackages.ID_XVER, CommonPackages.VER_XVER);
TestingUtilities.context().loadFromPackage(npm, new TestLoader(new String[] { "StructureDefinition" }), new String[] { "StructureDefinition" });
}
pu.setXver(new XVerExtensionManager(TestingUtilities.context()));
if (test.isSort()) {
List<String> errors = new ArrayList<String>();
int lastCount = output.getDifferential().getElement().size();
pu.sortDifferential(base, output, test.getSource().getName(), errors, false);
if (errors.size() > 0)
throw new FHIRException("Sort failed: " + errors.toString());
}
try {
messages.clear();
pu.generateSnapshot(base, output, test.getSource().getUrl(), "http://test.org/profile", test.getSource().getName());
List<ValidationMessage> ml = new ArrayList<>();
for (ValidationMessage vm : messages) {
if (vm.getLevel() == IssueSeverity.ERROR) {
ml.add(vm);
}
}
if (ml.size() > 0) {
throw new FHIRException("Snapshot Generation failed: " + ml.toString());
}
} catch (Throwable e) {
System.out.println("\r\nException: " + e.getMessage());
throw e;
}
if (output.getDifferential().hasElement()) {
RenderingContext rc = new RenderingContext(TestingUtilities.context(), null, null, "http://hl7.org/fhir", "", null, ResourceRendererMode.END_USER);
rc.setDestDir(Utilities.path("[tmp]", "snapshot"));
rc.setProfileUtilities(new ProfileUtilities(TestingUtilities.context(), null, new TestPKP()));
RendererFactory.factory(output, rc).render(output);
}
if (!fail) {
test.output = output;
TestingUtilities.context().cacheResource(output);
File dst = new File(TestingUtilities.tempFile("snapshot", test.getId() + "-expected.xml"));
if (dst.exists())
dst.delete();
IOUtils.copy(TestingUtilities.loadTestResourceStream("r5", "snapshot-generation", test.getId() + "-expected.xml"), new FileOutputStream(dst));
new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(TestingUtilities.tempFile("snapshot", test.getId() + "-actual.xml")), output);
StructureDefinition t1 = test.expected.copy();
t1.setText(null);
StructureDefinition t2 = test.output.copy();
t2.setText(null);
Assertions.assertTrue(t1.equalsDeep(t2), "Output does not match expected");
}
}
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