Examples with FHIRPathEngine org.hl7.fhir.r5.utils.FHIRPathEngine used on opensource projects

Example 1 with FHIRPathEngine

use of org.hl7.fhir.r5.utils.FHIRPathEngine in project kindling by HL7.

the class Publisher method processProfiles.

@SuppressWarnings("unchecked")
private void processProfiles() throws Exception {
    page.log(" ...process profiles (base)", LogMessageType.Process);
    // first, for each type and resource, we build it's master profile
    for (DefinedCode t : page.getDefinitions().getPrimitives().values()) {
        if (t instanceof PrimitiveType)
            genPrimitiveTypeProfile((PrimitiveType) t);
        else
            genPrimitiveTypeProfile((DefinedStringPattern) t);
    }
    genXhtmlProfile();
    for (TypeDefn t : page.getDefinitions().getTypes().values()) genTypeProfile(t);
    for (TypeDefn t : page.getDefinitions().getInfrastructure().values()) genTypeProfile(t);
    page.log(" ...process profiles (resources)", LogMessageType.Process);
    for (ResourceDefn r : page.getDefinitions().getBaseResources().values()) {
        r.setConformancePack(makeConformancePack(r));
        r.setProfile(new ProfileGenerator(page.getDefinitions(), page.getWorkerContext(), page, page.getGenDate(), page.getVersion(), dataElements, fpUsages, page.getFolders().rootDir, page.getUml(), page.getRc()).generate(r.getConformancePack(), r, "core", false));
        if (page.getProfiles().has(r.getProfile().getUrl()))
            throw new Exception("Duplicate Profile URL " + r.getProfile().getUrl());
        page.getProfiles().see(r.getProfile(), page.packageInfo());
        ResourceTableGenerator rtg = new ResourceTableGenerator(page.getFolders().dstDir, page, null, true, page.getVersion());
        r.getProfile().getText().setDiv(new XhtmlNode(NodeType.Element, "div"));
        r.getProfile().getText().getDiv().getChildNodes().add(rtg.generate(r, "", false));
    }
    for (String rn : page.getDefinitions().sortedResourceNames()) {
        ResourceDefn r = page.getDefinitions().getResourceByName(rn);
        r.setConformancePack(makeConformancePack(r));
        r.setProfile(new ProfileGenerator(page.getDefinitions(), page.getWorkerContext(), page, page.getGenDate(), page.getVersion(), dataElements, fpUsages, page.getFolders().rootDir, page.getUml(), page.getRc()).generate(r.getConformancePack(), r, "core", false));
        if (page.getProfiles().has(r.getProfile().getUrl()))
            throw new Exception("Duplicate Profile URL " + r.getProfile().getUrl());
        page.getProfiles().see(r.getProfile(), page.packageInfo());
        ResourceTableGenerator rtg = new ResourceTableGenerator(page.getFolders().dstDir, page, null, true, page.getVersion());
        r.getProfile().getText().setDiv(new XhtmlNode(NodeType.Element, "div"));
        r.getProfile().getText().getDiv().getChildNodes().add(rtg.generate(r, "", false));
    }
    for (ResourceDefn r : page.getDefinitions().getResourceTemplates().values()) {
        r.setConformancePack(makeConformancePack(r));
        r.setProfile(new ProfileGenerator(page.getDefinitions(), page.getWorkerContext(), page, page.getGenDate(), page.getVersion(), dataElements, fpUsages, page.getFolders().rootDir, page.getUml(), page.getRc()).generate(r.getConformancePack(), r, "core", true));
        ResourceTableGenerator rtg = new ResourceTableGenerator(page.getFolders().dstDir, page, null, true, page.getVersion());
        r.getProfile().getText().setDiv(new XhtmlNode(NodeType.Element, "div"));
        r.getProfile().getText().getDiv().getChildNodes().add(rtg.generate(r, "", true));
        if (page.getProfiles().has(r.getProfile().getUrl()))
            throw new Exception("Duplicate Profile URL " + r.getProfile().getUrl());
        page.getProfiles().see(r.getProfile(), page.packageInfo());
    }
    for (ProfiledType pt : page.getDefinitions().getConstraints().values()) {
        genProfiledTypeProfile(pt);
    }
    page.log(" ...process profiles (extensions)", LogMessageType.Process);
    for (StructureDefinition ex : page.getWorkerContext().getExtensionDefinitions()) processExtension(ex);
    for (ResourceDefn r : page.getDefinitions().getResources().values()) {
        // boolean logged = false;
        for (Profile ap : r.getConformancePackages()) {
            // logged = true;
            for (ConstraintStructure p : ap.getProfiles()) processProfile(ap, p, ap.getId(), r);
        }
    }
    page.log(" ...process profiles (packs)", LogMessageType.Process);
    // we have profiles scoped by resources, and stand alone profiles
    for (Profile ap : page.getDefinitions().getPackList()) {
        // page.log(" ...  pack "+ap.getId(), LogMessageType.Process);
        for (ConstraintStructure p : ap.getProfiles()) processProfile(ap, p, ap.getId(), null);
    }
    page.log(" ...process logical models", LogMessageType.Process);
    for (ImplementationGuideDefn ig : page.getDefinitions().getSortedIgs()) {
        for (LogicalModel lm : ig.getLogicalModels()) {
            page.log(" ...process logical model " + lm.getId(), LogMessageType.Process);
            if (lm.getDefinition() == null)
                lm.setDefinition(new ProfileGenerator(page.getDefinitions(), page.getWorkerContext(), page, page.getGenDate(), page.getVersion(), dataElements, fpUsages, page.getFolders().rootDir, page.getUml(), page.getRc()).generateLogicalModel(ig, lm.getResource()));
        }
    }
    // now, validate the profiles
    for (Profile ap : page.getDefinitions().getPackList()) for (ConstraintStructure p : ap.getProfiles()) validateProfile(p);
    for (ResourceDefn r : page.getDefinitions().getResources().values()) for (Profile ap : r.getConformancePackages()) for (ConstraintStructure p : ap.getProfiles()) validateProfile(p);
    page.log(" ...Check FHIR Path Expressions", LogMessageType.Process);
    StringBuilder b = new StringBuilder();
    FHIRPathEngine fp = new FHIRPathEngine(page.getWorkerContext());
    fp.setHostServices(page.getExpressionResolver());
    for (FHIRPathUsage p : fpUsages) {
        checkExpression(b, fp, p);
    }
    TextFile.stringToFile(b.toString(), Utilities.path(page.getFolders().dstDir, "fhirpaths.txt"));
    checkAllOk();
}

Example 2 with FHIRPathEngine

use of org.hl7.fhir.r5.utils.FHIRPathEngine in project org.hl7.fhir.core by hapifhir.

the class FluentPathTests method setup.

@BeforeAll
public void setup() throws IOException {
    TestingUtilities.context = SimpleWorkerContext.fromPack("C:\\work\\org.hl7.fhir.dstu2\\build\\publish\\validation-min.xml.zip");
    this.fp = new FHIRPathEngine(TestingUtilities.context);
}

Example 3 with FHIRPathEngine

use of org.hl7.fhir.r5.utils.FHIRPathEngine in project org.hl7.fhir.core by hapifhir.

the class FluentPathTests method testWrong.

private void testWrong(Resource resource, String expression) throws FileNotFoundException, IOException, FHIRException {
    if (TestingUtilities.context == null)
        TestingUtilities.context = SimpleWorkerContext.fromPack("C:\\work\\org.hl7.fhir\\build\\publish\\validation-min.xml.zip");
    FHIRPathEngine fp = new FHIRPathEngine(TestingUtilities.context);
    try {
        ExpressionNode node = fp.parse(expression);
        fp.check(null, null, resource.getResourceType().toString(), node);
        fp.evaluate(null, null, resource, node);
        if (fp.hasLog())
            System.out.println(fp.takeLog());
        Assertions.fail("Fail expected");
    } catch (PathEngineException e) {
    // ok
    }
}

Example 4 with FHIRPathEngine

use of org.hl7.fhir.r5.utils.FHIRPathEngine in project org.hl7.fhir.core by hapifhir.

the class FluentPathTests method test.

@SuppressWarnings("deprecation")
private void test(Resource resource, String expression, int count, String... types) throws FileNotFoundException, IOException, FHIRException {
    if (TestingUtilities.context == null)
        TestingUtilities.context = SimpleWorkerContext.fromPack("C:\\work\\org.hl7.fhir\\build\\publish\\validation-min.xml.zip");
    FHIRPathEngine fp = new FHIRPathEngine(TestingUtilities.context);
    ExpressionNode node = fp.parse(expression);
    fp.check(null, resource.getResourceType().toString(), resource.getResourceType().toString(), node);
    List<Base> outcome = fp.evaluate(resource, node);
    if (fp.hasLog())
        System.out.println(fp.takeLog());
    Assertions.assertTrue(outcome.size() == count, String.format("Expected %d objects but found %d", count, outcome.size()));
    CommaSeparatedStringBuilder msg = new CommaSeparatedStringBuilder();
    for (String t : types) msg.append(t);
    for (Base b : outcome) {
        boolean found = false;
        String type = b.fhirType();
        for (String t : types) if (type.equals(t))
            found = true;
        Assertions.assertTrue(found, String.format("Object type %s not ok from %s", type, msg));
    }
}

Example 5 with FHIRPathEngine

use of org.hl7.fhir.r5.utils.FHIRPathEngine in project org.hl7.fhir.core by hapifhir.

the class FluentPathTests method setup.

@BeforeAll
public void setup() throws IOException {
    TestingUtilities.context = SimpleWorkerContext.fromPack("C:\\work\\org.hl7.fhir\\build\\publish\\definitions.xml.zip");
    this.fp = new FHIRPathEngine(TestingUtilities.context);
}