Examples with LogicalModel org.hl7.fhir.definitions.model.LogicalModel used on opensource projects

Example 1 with LogicalModel

use of org.hl7.fhir.definitions.model.LogicalModel in project kindling by HL7.

the class Publisher method processProfiles.

@SuppressWarnings("unchecked")
private void processProfiles() throws Exception {
    page.log(" ...process profiles (base)", LogMessageType.Process);
    // first, for each type and resource, we build it's master profile
    for (DefinedCode t : page.getDefinitions().getPrimitives().values()) {
        if (t instanceof PrimitiveType)
            genPrimitiveTypeProfile((PrimitiveType) t);
        else
            genPrimitiveTypeProfile((DefinedStringPattern) t);
    }
    genXhtmlProfile();
    for (TypeDefn t : page.getDefinitions().getTypes().values()) genTypeProfile(t);
    for (TypeDefn t : page.getDefinitions().getInfrastructure().values()) genTypeProfile(t);
    page.log(" ...process profiles (resources)", LogMessageType.Process);
    for (ResourceDefn r : page.getDefinitions().getBaseResources().values()) {
        r.setConformancePack(makeConformancePack(r));
        r.setProfile(new ProfileGenerator(page.getDefinitions(), page.getWorkerContext(), page, page.getGenDate(), page.getVersion(), dataElements, fpUsages, page.getFolders().rootDir, page.getUml(), page.getRc()).generate(r.getConformancePack(), r, "core", false));
        if (page.getProfiles().has(r.getProfile().getUrl()))
            throw new Exception("Duplicate Profile URL " + r.getProfile().getUrl());
        page.getProfiles().see(r.getProfile(), page.packageInfo());
        ResourceTableGenerator rtg = new ResourceTableGenerator(page.getFolders().dstDir, page, null, true, page.getVersion());
        r.getProfile().getText().setDiv(new XhtmlNode(NodeType.Element, "div"));
        r.getProfile().getText().getDiv().getChildNodes().add(rtg.generate(r, "", false));
    }
    for (String rn : page.getDefinitions().sortedResourceNames()) {
        ResourceDefn r = page.getDefinitions().getResourceByName(rn);
        r.setConformancePack(makeConformancePack(r));
        r.setProfile(new ProfileGenerator(page.getDefinitions(), page.getWorkerContext(), page, page.getGenDate(), page.getVersion(), dataElements, fpUsages, page.getFolders().rootDir, page.getUml(), page.getRc()).generate(r.getConformancePack(), r, "core", false));
        if (page.getProfiles().has(r.getProfile().getUrl()))
            throw new Exception("Duplicate Profile URL " + r.getProfile().getUrl());
        page.getProfiles().see(r.getProfile(), page.packageInfo());
        ResourceTableGenerator rtg = new ResourceTableGenerator(page.getFolders().dstDir, page, null, true, page.getVersion());
        r.getProfile().getText().setDiv(new XhtmlNode(NodeType.Element, "div"));
        r.getProfile().getText().getDiv().getChildNodes().add(rtg.generate(r, "", false));
    }
    for (ResourceDefn r : page.getDefinitions().getResourceTemplates().values()) {
        r.setConformancePack(makeConformancePack(r));
        r.setProfile(new ProfileGenerator(page.getDefinitions(), page.getWorkerContext(), page, page.getGenDate(), page.getVersion(), dataElements, fpUsages, page.getFolders().rootDir, page.getUml(), page.getRc()).generate(r.getConformancePack(), r, "core", true));
        ResourceTableGenerator rtg = new ResourceTableGenerator(page.getFolders().dstDir, page, null, true, page.getVersion());
        r.getProfile().getText().setDiv(new XhtmlNode(NodeType.Element, "div"));
        r.getProfile().getText().getDiv().getChildNodes().add(rtg.generate(r, "", true));
        if (page.getProfiles().has(r.getProfile().getUrl()))
            throw new Exception("Duplicate Profile URL " + r.getProfile().getUrl());
        page.getProfiles().see(r.getProfile(), page.packageInfo());
    }
    for (ProfiledType pt : page.getDefinitions().getConstraints().values()) {
        genProfiledTypeProfile(pt);
    }
    page.log(" ...process profiles (extensions)", LogMessageType.Process);
    for (StructureDefinition ex : page.getWorkerContext().getExtensionDefinitions()) processExtension(ex);
    for (ResourceDefn r : page.getDefinitions().getResources().values()) {
        // boolean logged = false;
        for (Profile ap : r.getConformancePackages()) {
            // logged = true;
            for (ConstraintStructure p : ap.getProfiles()) processProfile(ap, p, ap.getId(), r);
        }
    }
    page.log(" ...process profiles (packs)", LogMessageType.Process);
    // we have profiles scoped by resources, and stand alone profiles
    for (Profile ap : page.getDefinitions().getPackList()) {
        // page.log(" ...  pack "+ap.getId(), LogMessageType.Process);
        for (ConstraintStructure p : ap.getProfiles()) processProfile(ap, p, ap.getId(), null);
    }
    page.log(" ...process logical models", LogMessageType.Process);
    for (ImplementationGuideDefn ig : page.getDefinitions().getSortedIgs()) {
        for (LogicalModel lm : ig.getLogicalModels()) {
            page.log(" ...process logical model " + lm.getId(), LogMessageType.Process);
            if (lm.getDefinition() == null)
                lm.setDefinition(new ProfileGenerator(page.getDefinitions(), page.getWorkerContext(), page, page.getGenDate(), page.getVersion(), dataElements, fpUsages, page.getFolders().rootDir, page.getUml(), page.getRc()).generateLogicalModel(ig, lm.getResource()));
        }
    }
    // now, validate the profiles
    for (Profile ap : page.getDefinitions().getPackList()) for (ConstraintStructure p : ap.getProfiles()) validateProfile(p);
    for (ResourceDefn r : page.getDefinitions().getResources().values()) for (Profile ap : r.getConformancePackages()) for (ConstraintStructure p : ap.getProfiles()) validateProfile(p);
    page.log(" ...Check FHIR Path Expressions", LogMessageType.Process);
    StringBuilder b = new StringBuilder();
    FHIRPathEngine fp = new FHIRPathEngine(page.getWorkerContext());
    fp.setHostServices(page.getExpressionResolver());
    for (FHIRPathUsage p : fpUsages) {
        checkExpression(b, fp, p);
    }
    TextFile.stringToFile(b.toString(), Utilities.path(page.getFolders().dstDir, "fhirpaths.txt"));
    checkAllOk();
}

Example 2 with LogicalModel

use of org.hl7.fhir.definitions.model.LogicalModel in project kindling by HL7.

the class PageProcessor method getReferences.

private String getReferences(String name) throws Exception {
    List<String> refs = new ArrayList<String>();
    if (definitions.hasLogicalModel(name)) {
        ElementDefn r = definitions.getLogicalModel(name).getResource().getRoot();
        List<String> names = definitions.listAllPatterns(r.getName());
        for (String rn : definitions.sortedResourceNames()) {
            checkPatternReferences(names, refs, rn, definitions.getResourceByName(rn).getRoot(), definitions.getLogicalModel(name).getMappingUrl());
        }
        if (refs.size() == 1)
            return "<h2>References</h2><p>This pattern is implemented by " + renderRef(refs.get(0), name) + ".</p>\r\n";
        else if (refs.size() > 1)
            return "<h2>References</h2><p>This pattern is implemented by " + asLinks(refs, name) + ".</p>\r\n";
        else
            return "<h2>References</h2><p>No resources follow this pattern.</p>";
    } else {
        for (String tn : definitions.sortedTypeNames()) {
            checkReferences(name, refs, tn, definitions.getElementDefn(tn));
        }
        for (String rn : definitions.sortedResourceNames()) {
            checkReferences(name, refs, rn, definitions.getResourceByName(rn).getRoot());
        }
        String r;
        if (refs.size() == 1)
            r = "<h2>References</h2><p>This resource is referenced by " + renderRef(refs.get(0), name) + ".</p>\r\n";
        else if (refs.size() > 1)
            r = "<h2>References</h2><p>This resource is referenced by " + asLinks(refs, name) + ".</p>\r\n";
        else
            r = "<h2>References</h2><p>No resources refer to this resource directly.</p>";
        refs.clear();
        for (ImplementationGuideDefn ig : definitions.getSortedIgs()) {
            for (LogicalModel lm : ig.getLogicalModels()) {
                checkPatternUsage(lm.getResource().getRoot().getName(), refs, definitions.getResourceByName(name).getRoot(), lm.getMappingUrl());
            }
        }
        if (refs.size() == 1)
            return r + "<p>This resource implements the " + renderRef(refs.get(0), name) + " pattern.</p>\r\n";
        else if (refs.size() > 1)
            return r + "<p>This resource implements the " + asLinks(refs, name) + " patterns.</p>\r\n";
        else
            return r + "<p>This resource does not implement any patterns.</p>";
    }
}

Example 3 with LogicalModel

use of org.hl7.fhir.definitions.model.LogicalModel in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method genElement.

private void genElement(String defPath, HierarchicalTableGenerator gen, List<Row> rows, ElementDefinition element, List<ElementDefinition> all, List<StructureDefinition> profiles, boolean showMissing, String profileBaseFileName, Boolean extensions, boolean snapshot, String corePath, String imagePath, boolean root, boolean logicalModel, boolean isConstraintMode, boolean allInvariants) throws IOException {
    StructureDefinition profile = profiles == null ? null : profiles.get(profiles.size() - 1);
    String s = tail(element.getPath());
    List<ElementDefinition> children = getChildren(all, element);
    boolean isExtension = (s.equals("extension") || s.equals("modifierExtension"));
    if (!snapshot && isExtension && extensions != null && extensions != isExtension)
        return;
    if (!onlyInformationIsMapping(all, element)) {
        Row row = gen.new Row();
        row.setAnchor(element.getPath());
        row.setColor(getRowColor(element, isConstraintMode));
        boolean hasDef = element != null;
        boolean ext = false;
        if (s.equals("extension")) {
            if (element.hasType() && element.getType().get(0).hasProfile() && extensionIsComplex(element.getType().get(0).getProfile()))
                row.setIcon("icon_extension_complex.png", HierarchicalTableGenerator.TEXT_ICON_EXTENSION_COMPLEX);
            else
                row.setIcon("icon_extension_simple.png", HierarchicalTableGenerator.TEXT_ICON_EXTENSION_SIMPLE);
            ext = true;
        } else if (s.equals("modifierExtension")) {
            if (element.hasType() && element.getType().get(0).hasProfile() && extensionIsComplex(element.getType().get(0).getProfile()))
                row.setIcon("icon_modifier_extension_complex.png", HierarchicalTableGenerator.TEXT_ICON_EXTENSION_COMPLEX);
            else
                row.setIcon("icon_modifier_extension_simple.png", HierarchicalTableGenerator.TEXT_ICON_EXTENSION_SIMPLE);
        } else if (!hasDef || element.getType().size() == 0)
            row.setIcon("icon_element.gif", HierarchicalTableGenerator.TEXT_ICON_ELEMENT);
        else if (hasDef && element.getType().size() > 1) {
            if (allTypesAre(element.getType(), "Reference"))
                row.setIcon("icon_reference.png", HierarchicalTableGenerator.TEXT_ICON_REFERENCE);
            else
                row.setIcon("icon_choice.gif", HierarchicalTableGenerator.TEXT_ICON_CHOICE);
        } else if (hasDef && element.getType().get(0).getCode() != null && element.getType().get(0).getCode().startsWith("@"))
            row.setIcon("icon_reuse.png", HierarchicalTableGenerator.TEXT_ICON_REUSE);
        else if (hasDef && isPrimitive(element.getType().get(0).getCode()))
            row.setIcon("icon_primitive.png", HierarchicalTableGenerator.TEXT_ICON_PRIMITIVE);
        else if (hasDef && isReference(element.getType().get(0).getCode()))
            row.setIcon("icon_reference.png", HierarchicalTableGenerator.TEXT_ICON_REFERENCE);
        else if (hasDef && isDataType(element.getType().get(0).getCode()))
            row.setIcon("icon_datatype.gif", HierarchicalTableGenerator.TEXT_ICON_DATATYPE);
        else
            row.setIcon("icon_resource.png", HierarchicalTableGenerator.TEXT_ICON_RESOURCE);
        String ref = defPath == null ? null : defPath + element.getId();
        UnusedTracker used = new UnusedTracker();
        used.used = true;
        Cell left = gen.new Cell(null, ref, s, (element.hasSliceName() ? translate("sd.table", "Slice") + " " + element.getSliceName() : "") + (hasDef && element.hasSliceName() ? ": " : "") + (!hasDef ? null : gt(element.getDefinitionElement())), null);
        row.getCells().add(left);
        Cell gc = gen.new Cell();
        row.getCells().add(gc);
        if (element != null && element.getIsModifier())
            checkForNoChange(element.getIsModifierElement(), gc.addStyledText(translate("sd.table", "This element is a modifier element"), "?!", null, null, null, false));
        if (element != null && element.getMustSupport())
            checkForNoChange(element.getMustSupportElement(), gc.addStyledText(translate("sd.table", "This element must be supported"), "S", "white", "red", null, false));
        if (element != null && element.getIsSummary())
            checkForNoChange(element.getIsSummaryElement(), gc.addStyledText(translate("sd.table", "This element is included in summaries"), "\u03A3", null, null, null, false));
        if (element != null && (!element.getConstraint().isEmpty() || !element.getCondition().isEmpty()))
            gc.addStyledText(translate("sd.table", "This element has or is affected by some invariants"), "I", null, null, null, false);
        ExtensionContext extDefn = null;
        if (ext) {
            if (element != null && element.getType().size() == 1 && element.getType().get(0).hasProfile()) {
                extDefn = locateExtension(StructureDefinition.class, element.getType().get(0).getProfile());
                if (extDefn == null) {
                    genCardinality(gen, element, row, hasDef, used, null);
                    row.getCells().add(gen.new Cell(null, null, "?? " + element.getType().get(0).getProfile(), null, null));
                    generateDescription(gen, row, element, null, used.used, profile.getUrl(), element.getType().get(0).getProfile(), profile, corePath, imagePath, root, logicalModel, allInvariants);
                } else {
                    String name = urltail(element.getType().get(0).getProfile());
                    left.getPieces().get(0).setText(name);
                    // left.getPieces().get(0).setReference((String) extDefn.getExtensionStructure().getTag("filename"));
                    left.getPieces().get(0).setHint(translate("sd.table", "Extension URL") + " = " + extDefn.getUrl());
                    genCardinality(gen, element, row, hasDef, used, extDefn.getElement());
                    ElementDefinition valueDefn = extDefn.getExtensionValueDefinition();
                    if (valueDefn != null && !"0".equals(valueDefn.getMax()))
                        genTypes(gen, row, valueDefn, profileBaseFileName, profile, corePath, imagePath);
                    else
                        // if it's complex, we just call it nothing
                        // genTypes(gen, row, extDefn.getSnapshot().getElement().get(0), profileBaseFileName, profile);
                        row.getCells().add(gen.new Cell(null, null, "(" + translate("sd.table", "Complex") + ")", null, null));
                    generateDescription(gen, row, element, extDefn.getElement(), used.used, null, extDefn.getUrl(), profile, corePath, imagePath, root, logicalModel, allInvariants, valueDefn);
                }
            } else {
                genCardinality(gen, element, row, hasDef, used, null);
                if ("0".equals(element.getMax()))
                    row.getCells().add(gen.new Cell());
                else
                    genTypes(gen, row, element, profileBaseFileName, profile, corePath, imagePath);
                generateDescription(gen, row, element, null, used.used, null, null, profile, corePath, imagePath, root, logicalModel, allInvariants);
            }
        } else {
            genCardinality(gen, element, row, hasDef, used, null);
            if (hasDef && !"0".equals(element.getMax()))
                genTypes(gen, row, element, profileBaseFileName, profile, corePath, imagePath);
            else
                row.getCells().add(gen.new Cell());
            generateDescription(gen, row, element, null, used.used, null, null, profile, corePath, imagePath, root, logicalModel, allInvariants);
        }
        if (element.hasSlicing()) {
            if (standardExtensionSlicing(element)) {
                used.used = element.hasType() && element.getType().get(0).hasProfile();
                showMissing = false;
            } else {
                row.setIcon("icon_slice.png", HierarchicalTableGenerator.TEXT_ICON_SLICE);
                row.getCells().get(2).getPieces().clear();
                for (Cell cell : row.getCells()) for (Piece p : cell.getPieces()) {
                    p.addStyle("font-style: italic");
                }
            }
        }
        if (used.used || showMissing)
            rows.add(row);
        if (!used.used && !element.hasSlicing()) {
            for (Cell cell : row.getCells()) for (Piece p : cell.getPieces()) {
                p.setStyle("text-decoration:line-through");
                p.setReference(null);
            }
        } else {
            for (ElementDefinition child : children) if (logicalModel || !child.getPath().endsWith(".id") || (child.getPath().endsWith(".id") && (profile != null) && (profile.getDerivation() == TypeDerivationRule.CONSTRAINT)))
                genElement(defPath, gen, row.getSubRows(), child, all, profiles, showMissing, profileBaseFileName, isExtension, snapshot, corePath, imagePath, false, logicalModel, isConstraintMode, allInvariants);
            if (!snapshot && (extensions == null || !extensions))
                for (ElementDefinition child : children) if (child.getPath().endsWith(".extension") || child.getPath().endsWith(".modifierExtension"))
                    genElement(defPath, gen, row.getSubRows(), child, all, profiles, showMissing, profileBaseFileName, true, false, corePath, imagePath, false, logicalModel, isConstraintMode, allInvariants);
        }
    }
}

Example 4 with LogicalModel

use of org.hl7.fhir.definitions.model.LogicalModel in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method generateTable.

public XhtmlNode generateTable(String defFile, StructureDefinition profile, boolean diff, String imageFolder, boolean inlineGraphics, String profileBaseFileName, boolean snapshot, String corePath, String imagePath, boolean logicalModel, boolean allInvariants, Set<String> outputTracker) throws IOException, FHIRException {
    // check it's ok to get rid of one of these
    assert (diff != snapshot);
    HierarchicalTableGenerator gen = new HierarchicalTableGenerator(imageFolder, inlineGraphics);
    gen.setTranslator(getTranslator());
    TableModel model = gen.initNormalTable(corePath, false, true, profile.getId() + (diff ? "d" : "s"), false);
    List<ElementDefinition> list = diff ? profile.getDifferential().getElement() : profile.getSnapshot().getElement();
    List<StructureDefinition> profiles = new ArrayList<StructureDefinition>();
    profiles.add(profile);
    genElement(defFile == null ? null : defFile + "#", gen, model.getRows(), list.get(0), list, profiles, diff, profileBaseFileName, null, snapshot, corePath, imagePath, true, logicalModel, profile.getDerivation() == TypeDerivationRule.CONSTRAINT && usesMustSupport(list), allInvariants);
    try {
        return gen.generate(model, imagePath, 0, outputTracker);
    } catch (org.hl7.fhir.exceptions.FHIRException e) {
        throw new FHIRException(e.getMessage(), e);
    }
}

Example 5 with LogicalModel

use of org.hl7.fhir.definitions.model.LogicalModel in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method generateTable.

public XhtmlNode generateTable(String defFile, StructureDefinition profile, boolean diff, String imageFolder, boolean inlineGraphics, String profileBaseFileName, boolean snapshot, String corePath, boolean logicalModel, Set<String> outputTracker) throws IOException, FHIRException {
    // check it's ok to get rid of one of these
    assert (diff != snapshot);
    HierarchicalTableGenerator gen = new HierarchicalTableGenerator(imageFolder, inlineGraphics);
    TableModel model = gen.initNormalTable(corePath, false, true, profile.getId() + (diff ? "d" : "s"), false);
    List<ElementDefinition> list = diff ? profile.getDifferential().getElement() : profile.getSnapshot().getElement();
    List<StructureDefinition> profiles = new ArrayList<StructureDefinition>();
    profiles.add(profile);
    genElement(defFile == null ? null : defFile + "#" + profile.getId() + ".", gen, model.getRows(), list.get(0), list, profiles, diff, profileBaseFileName, null, snapshot, corePath, true, logicalModel);
    try {
        return gen.generate(model, corePath, 0, outputTracker);
    } catch (org.hl7.fhir.exceptions.FHIRException e) {
        throw new FHIRException(e.getMessage(), e);
    }
}