use of org.hl7.fhir.dstu2016may.utils.FHIRPathEngine in project kindling by HL7.
the class Publisher method processProfiles.
@SuppressWarnings("unchecked")
private void processProfiles() throws Exception {
page.log(" ...process profiles (base)", LogMessageType.Process);
// first, for each type and resource, we build it's master profile
for (DefinedCode t : page.getDefinitions().getPrimitives().values()) {
if (t instanceof PrimitiveType)
genPrimitiveTypeProfile((PrimitiveType) t);
else
genPrimitiveTypeProfile((DefinedStringPattern) t);
}
genXhtmlProfile();
for (TypeDefn t : page.getDefinitions().getTypes().values()) genTypeProfile(t);
for (TypeDefn t : page.getDefinitions().getInfrastructure().values()) genTypeProfile(t);
page.log(" ...process profiles (resources)", LogMessageType.Process);
for (ResourceDefn r : page.getDefinitions().getBaseResources().values()) {
r.setConformancePack(makeConformancePack(r));
r.setProfile(new ProfileGenerator(page.getDefinitions(), page.getWorkerContext(), page, page.getGenDate(), page.getVersion(), dataElements, fpUsages, page.getFolders().rootDir, page.getUml(), page.getRc()).generate(r.getConformancePack(), r, "core", false));
if (page.getProfiles().has(r.getProfile().getUrl()))
throw new Exception("Duplicate Profile URL " + r.getProfile().getUrl());
page.getProfiles().see(r.getProfile(), page.packageInfo());
ResourceTableGenerator rtg = new ResourceTableGenerator(page.getFolders().dstDir, page, null, true, page.getVersion());
r.getProfile().getText().setDiv(new XhtmlNode(NodeType.Element, "div"));
r.getProfile().getText().getDiv().getChildNodes().add(rtg.generate(r, "", false));
}
for (String rn : page.getDefinitions().sortedResourceNames()) {
ResourceDefn r = page.getDefinitions().getResourceByName(rn);
r.setConformancePack(makeConformancePack(r));
r.setProfile(new ProfileGenerator(page.getDefinitions(), page.getWorkerContext(), page, page.getGenDate(), page.getVersion(), dataElements, fpUsages, page.getFolders().rootDir, page.getUml(), page.getRc()).generate(r.getConformancePack(), r, "core", false));
if (page.getProfiles().has(r.getProfile().getUrl()))
throw new Exception("Duplicate Profile URL " + r.getProfile().getUrl());
page.getProfiles().see(r.getProfile(), page.packageInfo());
ResourceTableGenerator rtg = new ResourceTableGenerator(page.getFolders().dstDir, page, null, true, page.getVersion());
r.getProfile().getText().setDiv(new XhtmlNode(NodeType.Element, "div"));
r.getProfile().getText().getDiv().getChildNodes().add(rtg.generate(r, "", false));
}
for (ResourceDefn r : page.getDefinitions().getResourceTemplates().values()) {
r.setConformancePack(makeConformancePack(r));
r.setProfile(new ProfileGenerator(page.getDefinitions(), page.getWorkerContext(), page, page.getGenDate(), page.getVersion(), dataElements, fpUsages, page.getFolders().rootDir, page.getUml(), page.getRc()).generate(r.getConformancePack(), r, "core", true));
ResourceTableGenerator rtg = new ResourceTableGenerator(page.getFolders().dstDir, page, null, true, page.getVersion());
r.getProfile().getText().setDiv(new XhtmlNode(NodeType.Element, "div"));
r.getProfile().getText().getDiv().getChildNodes().add(rtg.generate(r, "", true));
if (page.getProfiles().has(r.getProfile().getUrl()))
throw new Exception("Duplicate Profile URL " + r.getProfile().getUrl());
page.getProfiles().see(r.getProfile(), page.packageInfo());
}
for (ProfiledType pt : page.getDefinitions().getConstraints().values()) {
genProfiledTypeProfile(pt);
}
page.log(" ...process profiles (extensions)", LogMessageType.Process);
for (StructureDefinition ex : page.getWorkerContext().getExtensionDefinitions()) processExtension(ex);
for (ResourceDefn r : page.getDefinitions().getResources().values()) {
// boolean logged = false;
for (Profile ap : r.getConformancePackages()) {
// logged = true;
for (ConstraintStructure p : ap.getProfiles()) processProfile(ap, p, ap.getId(), r);
}
}
page.log(" ...process profiles (packs)", LogMessageType.Process);
// we have profiles scoped by resources, and stand alone profiles
for (Profile ap : page.getDefinitions().getPackList()) {
// page.log(" ... pack "+ap.getId(), LogMessageType.Process);
for (ConstraintStructure p : ap.getProfiles()) processProfile(ap, p, ap.getId(), null);
}
page.log(" ...process logical models", LogMessageType.Process);
for (ImplementationGuideDefn ig : page.getDefinitions().getSortedIgs()) {
for (LogicalModel lm : ig.getLogicalModels()) {
page.log(" ...process logical model " + lm.getId(), LogMessageType.Process);
if (lm.getDefinition() == null)
lm.setDefinition(new ProfileGenerator(page.getDefinitions(), page.getWorkerContext(), page, page.getGenDate(), page.getVersion(), dataElements, fpUsages, page.getFolders().rootDir, page.getUml(), page.getRc()).generateLogicalModel(ig, lm.getResource()));
}
}
// now, validate the profiles
for (Profile ap : page.getDefinitions().getPackList()) for (ConstraintStructure p : ap.getProfiles()) validateProfile(p);
for (ResourceDefn r : page.getDefinitions().getResources().values()) for (Profile ap : r.getConformancePackages()) for (ConstraintStructure p : ap.getProfiles()) validateProfile(p);
page.log(" ...Check FHIR Path Expressions", LogMessageType.Process);
StringBuilder b = new StringBuilder();
FHIRPathEngine fp = new FHIRPathEngine(page.getWorkerContext());
fp.setHostServices(page.getExpressionResolver());
for (FHIRPathUsage p : fpUsages) {
checkExpression(b, fp, p);
}
TextFile.stringToFile(b.toString(), Utilities.path(page.getFolders().dstDir, "fhirpaths.txt"));
checkAllOk();
}
use of org.hl7.fhir.dstu2016may.utils.FHIRPathEngine in project org.hl7.fhir.core by hapifhir.
the class FluentPathTests method setup.
@BeforeAll
public void setup() throws IOException {
TestingUtilities.context = SimpleWorkerContext.fromPack("C:\\work\\org.hl7.fhir.dstu2\\build\\publish\\validation-min.xml.zip");
this.fp = new FHIRPathEngine(TestingUtilities.context);
}
use of org.hl7.fhir.dstu2016may.utils.FHIRPathEngine in project org.hl7.fhir.core by hapifhir.
the class FluentPathTests method testWrong.
private void testWrong(Resource resource, String expression) throws FileNotFoundException, IOException, FHIRException {
if (TestingUtilities.context == null)
TestingUtilities.context = SimpleWorkerContext.fromPack("C:\\work\\org.hl7.fhir\\build\\publish\\validation-min.xml.zip");
FHIRPathEngine fp = new FHIRPathEngine(TestingUtilities.context);
try {
ExpressionNode node = fp.parse(expression);
fp.check(null, null, resource.getResourceType().toString(), node);
fp.evaluate(null, null, resource, node);
if (fp.hasLog())
System.out.println(fp.takeLog());
Assertions.fail("Fail expected");
} catch (PathEngineException e) {
// ok
}
}
use of org.hl7.fhir.dstu2016may.utils.FHIRPathEngine in project org.hl7.fhir.core by hapifhir.
the class FluentPathTests method test.
@SuppressWarnings("deprecation")
private void test(Resource resource, String expression, int count, String... types) throws FileNotFoundException, IOException, FHIRException {
if (TestingUtilities.context == null)
TestingUtilities.context = SimpleWorkerContext.fromPack("C:\\work\\org.hl7.fhir\\build\\publish\\validation-min.xml.zip");
FHIRPathEngine fp = new FHIRPathEngine(TestingUtilities.context);
ExpressionNode node = fp.parse(expression);
fp.check(null, resource.getResourceType().toString(), resource.getResourceType().toString(), node);
List<Base> outcome = fp.evaluate(resource, node);
if (fp.hasLog())
System.out.println(fp.takeLog());
Assertions.assertTrue(outcome.size() == count, String.format("Expected %d objects but found %d", count, outcome.size()));
CommaSeparatedStringBuilder msg = new CommaSeparatedStringBuilder();
for (String t : types) msg.append(t);
for (Base b : outcome) {
boolean found = false;
String type = b.fhirType();
for (String t : types) if (type.equals(t))
found = true;
Assertions.assertTrue(found, String.format("Object type %s not ok from %s", type, msg));
}
}
use of org.hl7.fhir.dstu2016may.utils.FHIRPathEngine in project org.hl7.fhir.core by hapifhir.
the class FluentPathTests method setup.
@BeforeAll
public void setup() throws IOException {
TestingUtilities.context = SimpleWorkerContext.fromPack("C:\\work\\org.hl7.fhir\\build\\publish\\definitions.xml.zip");
this.fp = new FHIRPathEngine(TestingUtilities.context);
}
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