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Example 41 with Rule

use of org.hl7.fhir.utilities.xml.SchematronWriter.Rule in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeContractComputableLanguageComponent.

protected void composeContractComputableLanguageComponent(Complex parent, String parentType, String name, Contract.ComputableLanguageComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "rule", name, element, index);
    if (element.hasContent())
        composeType(t, "Contract", "content", element.getContent(), -1);
}
Also used : Complex(org.hl7.fhir.r4.utils.formats.Turtle.Complex)

Example 42 with Rule

use of org.hl7.fhir.utilities.xml.SchematronWriter.Rule in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeGraphDefinitionGraphDefinitionLinkTargetCompartmentComponent.

protected void composeGraphDefinitionGraphDefinitionLinkTargetCompartmentComponent(Complex parent, String parentType, String name, GraphDefinition.GraphDefinitionLinkTargetCompartmentComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "compartment", name, element, index);
    if (element.hasUseElement())
        composeEnum(t, "GraphDefinition", "use", element.getUseElement(), -1);
    if (element.hasCodeElement())
        composeEnum(t, "GraphDefinition", "code", element.getCodeElement(), -1);
    if (element.hasRuleElement())
        composeEnum(t, "GraphDefinition", "rule", element.getRuleElement(), -1);
    if (element.hasExpressionElement())
        composeString(t, "GraphDefinition", "expression", element.getExpressionElement(), -1);
    if (element.hasDescriptionElement())
        composeString(t, "GraphDefinition", "description", element.getDescriptionElement(), -1);
}
Also used : Complex(org.hl7.fhir.r4.utils.formats.Turtle.Complex)

Example 43 with Rule

use of org.hl7.fhir.utilities.xml.SchematronWriter.Rule in project org.hl7.fhir.core by hapifhir.

the class SnapShotGenerationTests method test.

@SuppressWarnings("deprecation")
@ParameterizedTest(name = "{index}: file {0}")
@MethodSource("data")
public void test(String id, TestDetails test, SnapShotGenerationTestsContext context) throws Exception {
    fp.setHostServices(context);
    messages = new ArrayList<ValidationMessage>();
    if (test.isFail()) {
        try {
            if (test.isGen())
                testGen(test, context);
            else
                testSort(test, context);
            Assertions.assertTrue(false, "Should have failed");
        } catch (Throwable e) {
            Assertions.assertTrue(true, "all ok");
        }
    } else if (test.isGen())
        testGen(test, context);
    else
        testSort(test, context);
    for (Rule r : test.getRules()) {
        StructureDefinition sdn = new StructureDefinition();
        boolean ok = fp.evaluateToBoolean(sdn, sdn, sdn, r.expression);
        Assertions.assertTrue(ok, r.description);
    }
}
Also used : StructureDefinition(org.hl7.fhir.r4.model.StructureDefinition) ValidationMessage(org.hl7.fhir.utilities.validation.ValidationMessage) TypeDerivationRule(org.hl7.fhir.r4.model.StructureDefinition.TypeDerivationRule) ParameterizedTest(org.junit.jupiter.params.ParameterizedTest) MethodSource(org.junit.jupiter.params.provider.MethodSource)

Example 44 with Rule

use of org.hl7.fhir.utilities.xml.SchematronWriter.Rule in project org.hl7.fhir.core by hapifhir.

the class ProfileComparer method compareElements.

private void compareElements(ProfileComparison comp, StructuralMatch<ElementDefinitionNode> res, String path, String sliceName, DefinitionNavigator left, DefinitionNavigator right) throws DefinitionException, FHIRFormatError, IOException {
    assert (path != null);
    assert (left != null);
    assert (right != null);
    assert (left.path().equals(right.path()));
    if (session.isDebug()) {
        System.out.println("Compare elements at " + path);
    }
    // not allowed to be different:
    // ruleEqual(comp, res, left.current().getDefaultValue(), right.current().getDefaultValue(), "defaultValue", path);
    // ruleEqual(comp, res, left.current().getMeaningWhenMissingElement(), right.current().getMeaningWhenMissingElement(), "meaningWhenMissing", path);
    // ruleEqual(comp, res, left.current().getIsModifierElement(), right.current().getIsModifierElement(), "isModifier", path); - this check belongs in the core
    // ruleEqual(comp, res, left.current().getIsSummaryElement(), right.current().getIsSummaryElement(), "isSummary", path); - so does this
    // we ignore slicing right now - we're going to clone the root one anyway, and then think about clones
    // simple stuff
    ElementDefinition subset = new ElementDefinition();
    subset.setPath(left.path());
    if (sliceName != null)
        subset.setSliceName(sliceName);
    // can't be bothered even testing this one
    subset.getRepresentation().addAll(left.current().getRepresentation());
    subset.setDefaultValue(left.current().getDefaultValue());
    subset.setMeaningWhenMissing(left.current().getMeaningWhenMissing());
    subset.setIsModifier(left.current().getIsModifier());
    subset.setIsSummary(left.current().getIsSummary());
    // descriptive properties from ElementDefinition - merge them:
    subset.setLabel(mergeText(comp, res, path, "label", left.current().getLabel(), right.current().getLabel(), false));
    subset.setShort(mergeText(comp, res, path, "short", left.current().getShort(), right.current().getShort(), false));
    subset.setDefinition(mergeText(comp, res, path, "definition", left.current().getDefinition(), right.current().getDefinition(), false));
    subset.setComment(mergeText(comp, res, path, "comments", left.current().getComment(), right.current().getComment(), false));
    subset.setRequirements(mergeText(comp, res, path, "requirements", left.current().getRequirements(), right.current().getRequirements(), false));
    subset.getCode().addAll(mergeCodings(left.current().getCode(), right.current().getCode()));
    subset.getAlias().addAll(mergeStrings(left.current().getAlias(), right.current().getAlias()));
    subset.getMapping().addAll(mergeMappings(left.current().getMapping(), right.current().getMapping()));
    // left will win for example
    subset.setExample(left.current().hasExample() ? left.current().getExample() : right.current().getExample());
    if (left.current().getMustSupport() != right.current().getMustSupport()) {
        vm(IssueSeverity.WARNING, "Elements differ in definition for mustSupport: '" + left.current().getMustSupport() + "' vs '" + right.current().getMustSupport() + "'", path, comp.getMessages(), res.getMessages());
    }
    subset.setMustSupport(left.current().getMustSupport() || right.current().getMustSupport());
    ElementDefinition superset = subset.copy();
    // compare and intersect
    int leftMin = left.current().getMin();
    int rightMin = right.current().getMin();
    int leftMax = "*".equals(left.current().getMax()) ? Integer.MAX_VALUE : Integer.parseInt(left.current().getMax());
    int rightMax = "*".equals(right.current().getMax()) ? Integer.MAX_VALUE : Integer.parseInt(right.current().getMax());
    checkMinMax(comp, res, path, leftMin, rightMin, leftMax, rightMax);
    superset.setMin(unionMin(leftMin, rightMin));
    superset.setMax(unionMax(leftMax, rightMax, left.current().getMax(), right.current().getMax()));
    subset.setMin(intersectMin(leftMin, rightMin));
    subset.setMax(intersectMax(leftMax, rightMax, left.current().getMax(), right.current().getMax()));
    superset.getType().addAll(unionTypes(comp, res, path, left.current().getType(), right.current().getType()));
    subset.getType().addAll(intersectTypes(comp, res, subset, path, left.current().getType(), right.current().getType()));
    rule(comp, res, !subset.getType().isEmpty() || (!left.current().hasType() && !right.current().hasType()), path, "Type Mismatch: " + typeCode(left) + " vs " + typeCode(right));
    // <fixed[x]><!-- ?? 0..1 * Value must be exactly this --></fixed[x]>
    // <pattern[x]><!-- ?? 0..1 * Value must have at least these property values --></pattern[x]>
    superset.setMaxLengthElement(unionMaxLength(left.current().getMaxLength(), right.current().getMaxLength()));
    subset.setMaxLengthElement(intersectMaxLength(left.current().getMaxLength(), right.current().getMaxLength()));
    if (left.current().hasBinding() || right.current().hasBinding()) {
        compareBindings(comp, res, subset, superset, path, left.current(), right.current());
    }
    // note these are backwards
    superset.getConstraint().addAll(intersectConstraints(path, left.current().getConstraint(), right.current().getConstraint()));
    subset.getConstraint().addAll(unionConstraints(comp, res, path, left.current().getConstraint(), right.current().getConstraint()));
    comp.getIntersection().getSnapshot().getElement().add(subset);
    comp.getUnion().getSnapshot().getElement().add(superset);
    // add the children
    compareChildren(comp, res, path, left, right);
// 
// // now process the slices
// if (left.current().hasSlicing() || right.current().hasSlicing()) {
// assert sliceName == null;
// if (isExtension(left.path()))
// return compareExtensions(outcome, path, superset, subset, left, right);
// //      return true;
// else {
// ElementDefinitionSlicingComponent slicingL = left.current().getSlicing();
// ElementDefinitionSlicingComponent slicingR = right.current().getSlicing();
// // well, this is tricky. If one is sliced, and the other is not, then in general, the union just ignores the slices, and the intersection is the slices.
// if (left.current().hasSlicing() && !right.current().hasSlicing()) {
// // the super set is done. Any restrictions in the slices are irrelevant to what the super set says, except that we're going sum up the value sets if we can (for documentation purposes) (todo)
// // the minimum set is the slicing specified in the slicer
// subset.setSlicing(slicingL);
// // stick everything from the right to do with the slices to the subset
// copySlices(outcome.subset.getSnapshot().getElement(), left.getStructure().getSnapshot().getElement(), left.slices());
// } else if (!left.current().hasSlicing() && right.current().hasSlicing()) {
// // the super set is done. Any restrictions in the slices are irrelevant to what the super set says, except that we're going sum up the value sets if we can (for documentation purposes) (todo)
// // the minimum set is the slicing specified in the slicer
// subset.setSlicing(slicingR);
// // stick everything from the right to do with the slices to the subset
// copySlices(outcome.subset.getSnapshot().getElement(), right.getStructure().getSnapshot().getElement(), right.slices());
// } else if (isTypeSlicing(slicingL) || isTypeSlicing(slicingR)) {
// superset.getSlicing().setRules(SlicingRules.OPEN).setOrdered(false).addDiscriminator().setType(DiscriminatorType.TYPE).setPath("$this");
// subset.getSlicing().setRules(slicingL.getRules() == SlicingRules.CLOSED || slicingR.getRules() == SlicingRules.CLOSED ? SlicingRules.OPEN : SlicingRules.CLOSED).setOrdered(false).addDiscriminator().setType(DiscriminatorType.TYPE).setPath("$this");
// 
// // the superset is the union of the types
// // the subset is the intersection of them
// List<DefinitionNavigator> handled = new ArrayList<>();
// for (DefinitionNavigator t : left.slices()) {
// DefinitionNavigator r = findMatchingSlice(right.slices(), t);
// if (r == null) {
// copySlice(outcome.superset.getSnapshot().getElement(), left.getStructure().getSnapshot().getElement(), t);
// } else {
// handled.add(r);
// ret = compareElements(outcome, path+":"+t.current().getSliceName(), t, r, t.current().getSliceName()) && ret;
// }
// }
// for (DefinitionNavigator t : right.slices()) {
// if (!handled.contains(t)) {
// copySlice(outcome.superset.getSnapshot().getElement(), right.getStructure().getSnapshot().getElement(), t);
// }
// }
// } else if (slicingMatches(slicingL, slicingR)) {
// // if it's the same, we can try matching the slices - though we might have to give up without getting matches correct
// // there amy be implied consistency we can't reason about
// throw new DefinitionException("Slicing matches but is not handled yet at "+left.current().getId()+": ("+ProfileUtilities.summarizeSlicing(slicingL)+")");
// } else  {
// // if the slicing is different, we can't compare them - or can we?
// throw new DefinitionException("Slicing doesn't match at "+left.current().getId()+": ("+ProfileUtilities.summarizeSlicing(slicingL)+" / "+ProfileUtilities.summarizeSlicing(slicingR)+")");
// }
// }
// // todo: name
// }
// return ret;
// 
// // TODO Auto-generated method stub
// return null;
}
Also used : ElementDefinition(org.hl7.fhir.r5.model.ElementDefinition)

Example 45 with Rule

use of org.hl7.fhir.utilities.xml.SchematronWriter.Rule in project org.hl7.fhir.core by hapifhir.

the class SnapShotGenerationTests method test.

@SuppressWarnings("deprecation")
@ParameterizedTest(name = "{index}: file {0}")
@MethodSource("data")
public void test(String id, TestDetails test, SnapShotGenerationTestsContext context) throws Exception {
    fp.setHostServices(context);
    messages = new ArrayList<ValidationMessage>();
    if (test.noR4b) {
        Assert.assertTrue(true);
    } else {
        System.out.println("---- " + id + " -----------------------------------------");
        if (test.isFail()) {
            boolean failed = true;
            try {
                if (test.isGen())
                    testGen(true, test, context);
                else
                    testSort(test, context);
                failed = false;
            } catch (Throwable e) {
                System.out.println("Error running test: " + e.getMessage());
                if (!Utilities.noString(test.regex)) {
                    Assertions.assertTrue(e.getMessage().matches(test.regex), "correct error message");
                } else if ("Should have failed".equals(e.getMessage())) {
                    throw e;
                } else {
                }
            }
            Assertions.assertTrue(failed, "Should have failed");
        } else if (test.isGen())
            testGen(false, test, context);
        else
            testSort(test, context);
        for (Rule r : test.getRules()) {
            StructureDefinition sdn = new StructureDefinition();
            boolean ok = fp.evaluateToBoolean(sdn, sdn, sdn, r.expression);
            Assertions.assertTrue(ok, r.description);
        }
    }
}
Also used : StructureDefinition(org.hl7.fhir.r4b.model.StructureDefinition) ValidationMessage(org.hl7.fhir.utilities.validation.ValidationMessage) TypeDerivationRule(org.hl7.fhir.r4b.model.StructureDefinition.TypeDerivationRule) ParameterizedTest(org.junit.jupiter.params.ParameterizedTest) MethodSource(org.junit.jupiter.params.provider.MethodSource)

Aggregations

FHIRException (org.hl7.fhir.exceptions.FHIRException)76 ArrayList (java.util.ArrayList)46 Element (org.hl7.fhir.r5.elementmodel.Element)38 IOException (java.io.IOException)28 DefinitionException (org.hl7.fhir.exceptions.DefinitionException)26 NodeStack (org.hl7.fhir.validation.instance.utils.NodeStack)23 PathEngineException (org.hl7.fhir.exceptions.PathEngineException)20 StructureDefinition (org.hl7.fhir.r5.model.StructureDefinition)20 ValidationMessage (org.hl7.fhir.utilities.validation.ValidationMessage)19 IndexedElement (org.hl7.fhir.validation.instance.utils.IndexedElement)17 NotImplementedException (org.apache.commons.lang3.NotImplementedException)16 FHIRFormatError (org.hl7.fhir.exceptions.FHIRFormatError)14 FHIRLexerException (org.hl7.fhir.r5.utils.FHIRLexer.FHIRLexerException)14 Complex (org.hl7.fhir.dstu3.utils.formats.Turtle.Complex)13 TerminologyServiceException (org.hl7.fhir.exceptions.TerminologyServiceException)13 NamedElement (org.hl7.fhir.r5.elementmodel.ParserBase.NamedElement)13 ContactPoint (org.hl7.fhir.r5.model.ContactPoint)13 ValueSet (org.hl7.fhir.r5.model.ValueSet)13 XhtmlNode (org.hl7.fhir.utilities.xhtml.XhtmlNode)13 SpecialElement (org.hl7.fhir.r5.elementmodel.Element.SpecialElement)12