Examples with Rule org.hl7.fhir.utilities.xml.SchematronWriter.Rule used on opensource projects

Example 26 with Rule

use of org.hl7.fhir.utilities.xml.SchematronWriter.Rule in project org.hl7.fhir.core by hapifhir.

the class SnapShotGenerationTests method test.

@SuppressWarnings("deprecation")
@ParameterizedTest(name = "{index}: file {0}")
@MethodSource("data")
public void test(String id, TestDetails test, SnapShotGenerationTestsContext context) throws Exception {
    fp.setHostServices(context);
    messages = new ArrayList<ValidationMessage>();
    System.out.println("---- " + id + " -----------------------------------------");
    if (test.isFail()) {
        boolean failed = true;
        try {
            if (test.isGen())
                testGen(true, test, context);
            else
                testSort(test, context);
            failed = false;
        } catch (Throwable e) {
            System.out.println("Error running test: " + e.getMessage());
            if (!Utilities.noString(test.regex)) {
                Assertions.assertTrue(e.getMessage().matches(test.regex), "correct error message");
            } else if ("Should have failed".equals(e.getMessage())) {
                throw e;
            } else {
            }
        }
        Assertions.assertTrue(failed, "Should have failed");
    } else if (test.isGen())
        testGen(false, test, context);
    else
        testSort(test, context);
    for (Rule r : test.getRules()) {
        StructureDefinition sdn = new StructureDefinition();
        boolean ok = fp.evaluateToBoolean(sdn, sdn, sdn, r.expression);
        Assertions.assertTrue(ok, r.description);
    }
}

Example 27 with Rule

use of org.hl7.fhir.utilities.xml.SchematronWriter.Rule in project org.hl7.fhir.core by hapifhir.

the class StructureMapUtilitiesTest method assertSerializeDeserialize.

private void assertSerializeDeserialize(StructureMap structureMap) {
    Assertions.assertEquals("syntax", structureMap.getName());
    Assertions.assertEquals("Title of this map\r\nAuthor", structureMap.getDescription());
    Assertions.assertEquals("http://github.com/FHIR/fhir-test-cases/r5/fml/syntax", structureMap.getUrl());
    Assertions.assertEquals("Patient", structureMap.getStructure().get(0).getAlias());
    Assertions.assertEquals("http://hl7.org/fhir/StructureDefinition/Patient", structureMap.getStructure().get(0).getUrl());
    Assertions.assertEquals("Source Documentation", structureMap.getStructure().get(0).getDocumentation());
    Assertions.assertEquals("http://hl7.org/fhir/StructureDefinition/Patient", structureMap.getStructure().get(0).getUrl());
    Assertions.assertEquals("http://hl7.org/fhir/StructureDefinition/Basic", structureMap.getStructure().get(1).getUrl());
    Assertions.assertEquals("Target Documentation", structureMap.getStructure().get(1).getDocumentation());
    Assertions.assertEquals("Groups\r\nrule for patient group", structureMap.getGroup().get(0).getDocumentation());
    Assertions.assertEquals("Comment to rule", structureMap.getGroup().get(0).getRule().get(0).getDocumentation());
    Assertions.assertEquals("Copy identifier short syntax", structureMap.getGroup().get(0).getRule().get(1).getDocumentation());
    StructureMapGroupRuleTargetComponent target = structureMap.getGroup().get(0).getRule().get(2).getTarget().get(1);
    Assertions.assertEquals("'urn:uuid:' + r.lower()", target.getParameter().get(0).toString());
}

Example 28 with Rule

use of org.hl7.fhir.utilities.xml.SchematronWriter.Rule in project org.hl7.fhir.core by hapifhir.

the class InstanceValidator method validateResourceRules.

private void validateResourceRules(List<ValidationMessage> errors, Element element, NodeStack stack) {
    String lang = element.getNamedChildValue("language");
    Element text = element.getNamedChild("text");
    if (text != null) {
        Element div = text.getNamedChild("div");
        if (lang != null && div != null) {
            XhtmlNode xhtml = div.getXhtml();
            String l = xhtml.getAttribute("lang");
            String xl = xhtml.getAttribute("xml:lang");
            if (l == null && xl == null) {
                warning(errors, IssueType.BUSINESSRULE, div.line(), div.col(), stack.getLiteralPath(), false, I18nConstants.LANGUAGE_XHTML_LANG_MISSING1);
            } else {
                if (l == null) {
                    warning(errors, IssueType.BUSINESSRULE, div.line(), div.col(), stack.getLiteralPath(), false, I18nConstants.LANGUAGE_XHTML_LANG_MISSING2);
                } else if (!l.equals(lang)) {
                    warning(errors, IssueType.BUSINESSRULE, div.line(), div.col(), stack.getLiteralPath(), false, I18nConstants.LANGUAGE_XHTML_LANG_DIFFERENT1, lang, l);
                }
                if (xl == null) {
                    warning(errors, IssueType.BUSINESSRULE, div.line(), div.col(), stack.getLiteralPath(), false, I18nConstants.LANGUAGE_XHTML_LANG_MISSING3);
                } else if (!xl.equals(lang)) {
                    warning(errors, IssueType.BUSINESSRULE, div.line(), div.col(), stack.getLiteralPath(), false, I18nConstants.LANGUAGE_XHTML_LANG_DIFFERENT2, lang, xl);
                }
            }
        }
    }
    // security tags are a set (system|code)
    Element meta = element.getNamedChild(META);
    if (meta != null) {
        Set<String> tags = new HashSet<>();
        List<Element> list = new ArrayList<>();
        meta.getNamedChildren("security", list);
        int i = 0;
        for (Element e : list) {
            String s = e.getNamedChildValue("system") + "#" + e.getNamedChildValue("code");
            rule(errors, IssueType.BUSINESSRULE, e.line(), e.col(), stack.getLiteralPath() + ".meta.profile[" + Integer.toString(i) + "]", !tags.contains(s), I18nConstants.META_RES_SECURITY_DUPLICATE, s);
            tags.add(s);
            i++;
        }
    }
}

Example 29 with Rule

use of org.hl7.fhir.utilities.xml.SchematronWriter.Rule in project org.hl7.fhir.core by hapifhir.

the class InstanceValidator method checkCodeableConcept.

private void checkCodeableConcept(List<ValidationMessage> errors, String path, Element focus, CodeableConcept fixed, String fixedSource, boolean pattern) {
    checkFixedValue(errors, path + ".text", focus.getNamedChild("text"), fixed.getTextElement(), fixedSource, "text", focus, pattern);
    List<Element> codings = new ArrayList<Element>();
    focus.getNamedChildren("coding", codings);
    if (pattern) {
        if (rule(errors, IssueType.VALUE, focus.line(), focus.col(), path, codings.size() >= fixed.getCoding().size(), I18nConstants.TERMINOLOGY_TX_CODING_COUNT, Integer.toString(fixed.getCoding().size()), Integer.toString(codings.size()))) {
            for (int i = 0; i < fixed.getCoding().size(); i++) {
                Coding fixedCoding = fixed.getCoding().get(i);
                boolean found = false;
                List<ValidationMessage> allErrorsFixed = new ArrayList<>();
                List<ValidationMessage> errorsFixed;
                for (int j = 0; j < codings.size() && !found; ++j) {
                    errorsFixed = new ArrayList<>();
                    checkFixedValue(errorsFixed, path + ".coding", codings.get(j), fixedCoding, fixedSource, "coding", focus, pattern);
                    if (!hasErrors(errorsFixed)) {
                        found = true;
                    } else {
                        errorsFixed.stream().filter(t -> t.getLevel().ordinal() >= IssueSeverity.ERROR.ordinal()).forEach(t -> allErrorsFixed.add(t));
                    }
                }
                if (!found) {
                    if (fixedCoding.hasUserSelected()) {
                        rule(errors, IssueType.VALUE, focus.line(), focus.col(), path, false, pattern ? I18nConstants.TYPE_CHECKS_PATTERN_CC_US : I18nConstants.TYPE_CHECKS_FIXED_CC_US, fixedCoding.getSystemElement().asStringValue(), fixedCoding.getCodeElement().asStringValue(), fixedCoding.getDisplayElement().asStringValue(), fixedSource, allErrorsFixed, fixedCoding.getUserSelected());
                    } else {
                        rule(errors, IssueType.VALUE, focus.line(), focus.col(), path, false, pattern ? I18nConstants.TYPE_CHECKS_PATTERN_CC : I18nConstants.TYPE_CHECKS_FIXED_CC, fixedCoding.getSystemElement().asStringValue(), fixedCoding.getCodeElement().asStringValue(), fixedCoding.getDisplayElement().asStringValue(), fixedSource, allErrorsFixed);
                    }
                }
            }
        }
    } else {
        if (rule(errors, IssueType.VALUE, focus.line(), focus.col(), path, codings.size() == fixed.getCoding().size(), I18nConstants.TERMINOLOGY_TX_CODING_COUNT, Integer.toString(fixed.getCoding().size()), Integer.toString(codings.size()))) {
            for (int i = 0; i < codings.size(); i++) checkFixedValue(errors, path + ".coding", codings.get(i), fixed.getCoding().get(i), fixedSource, "coding", focus, false);
        }
    }
}

Example 30 with Rule

use of org.hl7.fhir.utilities.xml.SchematronWriter.Rule in project org.hl7.fhir.core by hapifhir.

the class InstanceValidator method checkCodeableConcept.

private boolean checkCodeableConcept(List<ValidationMessage> errors, String path, Element element, StructureDefinition profile, ElementDefinition theElementCntext, NodeStack stack) {
    boolean res = true;
    if (!noTerminologyChecks && theElementCntext != null && theElementCntext.hasBinding()) {
        ElementDefinitionBindingComponent binding = theElementCntext.getBinding();
        if (warning(errors, IssueType.CODEINVALID, element.line(), element.col(), path, binding != null, I18nConstants.TERMINOLOGY_TX_BINDING_MISSING, path)) {
            if (binding.hasValueSet()) {
                ValueSet valueset = resolveBindingReference(profile, binding.getValueSet(), profile.getUrl());
                if (valueset == null) {
                    CodeSystem cs = context.fetchCodeSystem(binding.getValueSet());
                    if (rule(errors, IssueType.CODEINVALID, element.line(), element.col(), path, cs == null, I18nConstants.TERMINOLOGY_TX_VALUESET_NOTFOUND_CS, describeReference(binding.getValueSet()))) {
                        warning(errors, IssueType.CODEINVALID, element.line(), element.col(), path, valueset != null, I18nConstants.TERMINOLOGY_TX_VALUESET_NOTFOUND, describeReference(binding.getValueSet()));
                    }
                } else {
                    try {
                        CodeableConcept cc = ObjectConverter.readAsCodeableConcept(element);
                        if (!cc.hasCoding()) {
                            if (binding.getStrength() == BindingStrength.REQUIRED)
                                rule(errors, IssueType.CODEINVALID, element.line(), element.col(), path, false, I18nConstants.TERMINOLOGY_TX_CODE_VALUESET, describeValueSet(binding.getValueSet()));
                            else if (binding.getStrength() == BindingStrength.EXTENSIBLE) {
                                if (binding.hasExtension("http://hl7.org/fhir/StructureDefinition/elementdefinition-maxValueSet"))
                                    rule(errors, IssueType.CODEINVALID, element.line(), element.col(), path, false, I18nConstants.TERMINOLOGY_TX_CODE_VALUESETMAX, describeReference(ToolingExtensions.readStringExtension(binding, "http://hl7.org/fhir/StructureDefinition/elementdefinition-maxValueSet")), valueset.getUrl());
                                else
                                    warning(errors, IssueType.CODEINVALID, element.line(), element.col(), path, false, I18nConstants.TERMINOLOGY_TX_CODE_VALUESET_EXT, describeValueSet(binding.getValueSet()));
                            }
                        } else {
                            long t = System.nanoTime();
                            // Check whether the codes are appropriate for the type of binding we have
                            boolean bindingsOk = true;
                            if (binding.getStrength() != BindingStrength.EXAMPLE) {
                                if (binding.getStrength() == BindingStrength.REQUIRED) {
                                    removeTrackedMessagesForLocation(errors, element, path);
                                }
                                boolean atLeastOneSystemIsSupported = false;
                                for (Coding nextCoding : cc.getCoding()) {
                                    String nextSystem = nextCoding.getSystem();
                                    if (isNotBlank(nextSystem) && context.supportsSystem(nextSystem)) {
                                        atLeastOneSystemIsSupported = true;
                                        break;
                                    }
                                }
                                if (!atLeastOneSystemIsSupported && binding.getStrength() == BindingStrength.EXAMPLE) {
                                // ignore this since we can't validate but it doesn't matter..
                                } else {
                                    // we're going to validate the codings directly, so only check the valueset
                                    ValidationResult vr = checkCodeOnServer(stack, valueset, cc, true);
                                    if (!vr.isOk()) {
                                        bindingsOk = false;
                                        if (vr.getErrorClass() != null && vr.getErrorClass() == TerminologyServiceErrorClass.NOSERVICE) {
                                            if (binding.getStrength() == BindingStrength.REQUIRED || (binding.getStrength() == BindingStrength.EXTENSIBLE && binding.hasExtension("http://hl7.org/fhir/StructureDefinition/elementdefinition-maxValueSet"))) {
                                                hint(errors, IssueType.CODEINVALID, element.line(), element.col(), path, false, I18nConstants.TERMINOLOGY_TX_NOSVC_BOUND_REQ, describeReference(binding.getValueSet()));
                                            } else if (binding.getStrength() == BindingStrength.EXTENSIBLE) {
                                                hint(errors, IssueType.CODEINVALID, element.line(), element.col(), path, false, I18nConstants.TERMINOLOGY_TX_NOSVC_BOUND_EXT, describeReference(binding.getValueSet()));
                                            }
                                        } else if (vr.getErrorClass() != null && vr.getErrorClass().isInfrastructure()) {
                                            if (binding.getStrength() == BindingStrength.REQUIRED)
                                                txWarning(errors, vr.getTxLink(), IssueType.CODEINVALID, element.line(), element.col(), path, false, I18nConstants.TERMINOLOGY_TX_CONFIRM_1_CC, describeReference(binding.getValueSet()), vr.getErrorClass().toString());
                                            else if (binding.getStrength() == BindingStrength.EXTENSIBLE) {
                                                if (binding.hasExtension("http://hl7.org/fhir/StructureDefinition/elementdefinition-maxValueSet"))
                                                    checkMaxValueSet(errors, path, element, profile, ToolingExtensions.readStringExtension(binding, "http://hl7.org/fhir/StructureDefinition/elementdefinition-maxValueSet"), cc, stack);
                                                else if (!noExtensibleWarnings)
                                                    txWarningForLaterRemoval(element, errors, vr.getTxLink(), IssueType.CODEINVALID, element.line(), element.col(), path, false, I18nConstants.TERMINOLOGY_TX_CONFIRM_2_CC, describeReference(binding.getValueSet()), vr.getErrorClass().toString());
                                            } else if (binding.getStrength() == BindingStrength.PREFERRED) {
                                                if (baseOnly) {
                                                    txHint(errors, vr.getTxLink(), IssueType.CODEINVALID, element.line(), element.col(), path, false, I18nConstants.TERMINOLOGY_TX_CONFIRM_3_CC, describeReference(binding.getValueSet()), vr.getErrorClass().toString());
                                                }
                                            }
                                        } else {
                                            if (binding.getStrength() == BindingStrength.REQUIRED) {
                                                txRule(errors, vr.getTxLink(), IssueType.CODEINVALID, element.line(), element.col(), path, false, I18nConstants.TERMINOLOGY_TX_NOVALID_1_CC, describeValueSet(binding.getValueSet()), ccSummary(cc));
                                            } else if (binding.getStrength() == BindingStrength.EXTENSIBLE) {
                                                if (binding.hasExtension("http://hl7.org/fhir/StructureDefinition/elementdefinition-maxValueSet"))
                                                    checkMaxValueSet(errors, path, element, profile, ToolingExtensions.readStringExtension(binding, "http://hl7.org/fhir/StructureDefinition/elementdefinition-maxValueSet"), cc, stack);
                                                if (!noExtensibleWarnings)
                                                    txWarningForLaterRemoval(element, errors, vr.getTxLink(), IssueType.CODEINVALID, element.line(), element.col(), path, false, I18nConstants.TERMINOLOGY_TX_NOVALID_2_CC, describeValueSet(binding.getValueSet()), ccSummary(cc));
                                            } else if (binding.getStrength() == BindingStrength.PREFERRED) {
                                                if (baseOnly) {
                                                    txHint(errors, vr.getTxLink(), IssueType.CODEINVALID, element.line(), element.col(), path, false, I18nConstants.TERMINOLOGY_TX_NOVALID_3_CC, describeValueSet(binding.getValueSet()), ccSummary(cc));
                                                }
                                            }
                                        }
                                    } else if (vr.getMessage() != null) {
                                        res = false;
                                        txWarning(errors, vr.getTxLink(), IssueType.CODEINVALID, element.line(), element.col(), path, false, vr.getMessage());
                                    } else {
                                        if (binding.getStrength() == BindingStrength.EXTENSIBLE) {
                                            removeTrackedMessagesForLocation(errors, element, path);
                                        }
                                        res = false;
                                    }
                                }
                                // to validate, we'll validate that the codes actually exist
                                if (bindingsOk) {
                                    for (Coding nextCoding : cc.getCoding()) {
                                        checkBindings(errors, path, element, stack, valueset, nextCoding);
                                    }
                                }
                                timeTracker.tx(t, "vc " + DataRenderer.display(context, cc));
                            }
                        }
                    } catch (Exception e) {
                        if (STACK_TRACE)
                            e.printStackTrace();
                        warning(errors, IssueType.CODEINVALID, element.line(), element.col(), path, false, I18nConstants.TERMINOLOGY_TX_ERROR_CODEABLECONCEPT, e.getMessage());
                    }
                }
            } else if (binding.hasValueSet()) {
                hint(errors, IssueType.CODEINVALID, element.line(), element.col(), path, false, I18nConstants.TERMINOLOGY_TX_BINDING_CANTCHECK);
            } else if (!noBindingMsgSuppressed) {
                hint(errors, IssueType.CODEINVALID, element.line(), element.col(), path, false, I18nConstants.TERMINOLOGY_TX_BINDING_NOSOURCE, path);
            }
        }
    }
    return res;
}