Search in sources :

Example 21 with Section

use of org.hl7.fhir.utilities.xml.SchematronWriter.Section in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method generateForChildren.

private void generateForChildren(SchematronWriter sch, String xpath, ElementDefinition ed, StructureDefinition structure, StructureDefinition base) throws IOException {
    // generateForChild(txt, structure, child);
    List<ElementDefinition> children = getChildList(structure, ed);
    String sliceName = null;
    ElementDefinitionSlicingComponent slicing = null;
    for (ElementDefinition child : children) {
        String name = tail(child.getPath());
        if (child.hasSlicing()) {
            sliceName = name;
            slicing = child.getSlicing();
        } else if (!name.equals(sliceName))
            slicing = null;
        ElementDefinition based = getByPath(base, child.getPath());
        boolean doMin = (child.getMin() > 0) && (based == null || (child.getMin() != based.getMin()));
        boolean doMax = child.hasMax() && !child.getMax().equals("*") && (based == null || (!child.getMax().equals(based.getMax())));
        Slicer slicer = slicing == null ? new Slicer(true) : generateSlicer(child, slicing, structure);
        if (slicer.check) {
            if (doMin || doMax) {
                Section s = sch.section(xpath);
                Rule r = s.rule(xpath);
                if (doMin)
                    r.assrt("count(f:" + name + slicer.criteria + ") >= " + Integer.toString(child.getMin()), name + slicer.name + ": minimum cardinality of '" + name + "' is " + Integer.toString(child.getMin()));
                if (doMax)
                    r.assrt("count(f:" + name + slicer.criteria + ") <= " + child.getMax(), name + slicer.name + ": maximum cardinality of '" + name + "' is " + child.getMax());
            }
        }
    }
    for (ElementDefinitionConstraintComponent inv : ed.getConstraint()) {
        if (inv.hasXpath()) {
            Section s = sch.section(ed.getPath());
            Rule r = s.rule(xpath);
            r.assrt(inv.getXpath(), (inv.hasId() ? inv.getId() + ": " : "") + inv.getHuman() + (inv.hasUserData(IS_DERIVED) ? " (inherited)" : ""));
        }
    }
    if (!ed.hasContentReference()) {
        for (ElementDefinition child : children) {
            String name = tail(child.getPath());
            generateForChildren(sch, xpath + "/f:" + name, child, structure, base);
        }
    }
}
Also used : ElementDefinitionSlicingComponent(org.hl7.fhir.r5.model.ElementDefinition.ElementDefinitionSlicingComponent) ElementDefinition(org.hl7.fhir.r5.model.ElementDefinition) Rule(org.hl7.fhir.utilities.xml.SchematronWriter.Rule) TypeDerivationRule(org.hl7.fhir.r5.model.StructureDefinition.TypeDerivationRule) Section(org.hl7.fhir.utilities.xml.SchematronWriter.Section) ElementDefinitionConstraintComponent(org.hl7.fhir.r5.model.ElementDefinition.ElementDefinitionConstraintComponent)

Example 22 with Section

use of org.hl7.fhir.utilities.xml.SchematronWriter.Section in project org.hl7.fhir.core by hapifhir.

the class RdfParserBase method compose.

@Override
public void compose(OutputStream stream, Resource resource) throws IOException {
    Turtle ttl = new Turtle();
    // ttl.setFormat(FFormat);
    ttl.prefix("fhir", "http://hl7.org/fhir/");
    ttl.prefix("rdfs", "http://www.w3.org/2000/01/rdf-schema#");
    Section section = ttl.section("resource");
    Subject subject;
    if (url != null)
        subject = section.triple("<" + url + ">", "a", "fhir:" + resource.getResourceType().toString());
    else
        subject = section.triple("[]", "a", "fhir:" + resource.getResourceType().toString());
    composeResource(subject, resource);
    try {
        ttl.commit(stream, false);
    } catch (Exception e) {
        throw new IOException(e);
    }
}
Also used : Turtle(org.hl7.fhir.r4.utils.formats.Turtle) IOException(java.io.IOException) Section(org.hl7.fhir.r4.utils.formats.Turtle.Section) Subject(org.hl7.fhir.r4.utils.formats.Turtle.Subject) IOException(java.io.IOException)

Example 23 with Section

use of org.hl7.fhir.utilities.xml.SchematronWriter.Section in project org.hl7.fhir.core by hapifhir.

the class BundleRenderer method addSection.

private void addSection(XhtmlNode x, BaseWrapper section, int level, boolean nested) throws UnsupportedEncodingException, FHIRException, IOException {
    if (section.has("title") || section.has("code") || section.has("text") || section.has("section")) {
        XhtmlNode div = x.div();
        if (section.has("title")) {
            div.h(level).tx(section.get("title").primitiveValue());
        } else if (section.has("code")) {
            renderBase(div.h(level), section.get("code"));
        }
        if (section.has("text")) {
            Base narrative = section.get("text");
            x.addChildren(narrative.getXhtml());
        }
        if (section.has("section")) {
            List<BaseWrapper> sections = section.children("section");
            for (BaseWrapper child : sections) {
                if (nested) {
                    addSection(x.blockquote(), child, level + 1, true);
                } else {
                    addSection(x, child, level + 1, true);
                }
            }
        }
    }
// children
}
Also used : BaseWrapper(org.hl7.fhir.r4b.renderers.utils.BaseWrappers.BaseWrapper) Base(org.hl7.fhir.r4b.model.Base) XhtmlNode(org.hl7.fhir.utilities.xhtml.XhtmlNode)

Example 24 with Section

use of org.hl7.fhir.utilities.xml.SchematronWriter.Section in project org.hl7.fhir.core by hapifhir.

the class BundleRenderer method renderDocument.

private boolean renderDocument(XhtmlNode x, ResourceWrapper b, List<BaseWrapper> entries) throws UnsupportedEncodingException, FHIRException, IOException, EOperationOutcome {
    // from the spec:
    // 
    // When the document is presented for human consumption, applications SHOULD present the collated narrative portions in order:
    // * The subject resource Narrative
    // * The Composition resource Narrative
    // * The section.text Narratives
    ResourceWrapper comp = (ResourceWrapper) entries.get(0).getChildByName("resource").getAsResource();
    ResourceWrapper subject = resolveReference(entries, comp.get("subject"));
    if (subject != null) {
        if (subject.hasNarrative()) {
            x.addChildren(subject.getNarrative());
        } else {
            RendererFactory.factory(subject, context).render(x, subject);
        }
    }
    x.hr();
    if (comp.hasNarrative()) {
        x.addChildren(comp.getNarrative());
        x.hr();
    }
    List<BaseWrapper> sections = comp.children("section");
    for (BaseWrapper section : sections) {
        addSection(x, section, 2, false);
    }
    return false;
}
Also used : ResourceWrapper(org.hl7.fhir.r5.renderers.utils.BaseWrappers.ResourceWrapper) BaseWrapper(org.hl7.fhir.r5.renderers.utils.BaseWrappers.BaseWrapper)

Example 25 with Section

use of org.hl7.fhir.utilities.xml.SchematronWriter.Section in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilities method generateForChildren.

private void generateForChildren(SchematronWriter sch, String xpath, ElementDefinition ed, StructureDefinition structure, StructureDefinition base) throws IOException {
    // generateForChild(txt, structure, child);
    List<ElementDefinition> children = getChildList(structure, ed);
    String sliceName = null;
    ElementDefinitionSlicingComponent slicing = null;
    for (ElementDefinition child : children) {
        String name = tail(child.getPath());
        if (child.hasSlicing()) {
            sliceName = name;
            slicing = child.getSlicing();
        } else if (!name.equals(sliceName))
            slicing = null;
        ElementDefinition based = getByPath(base, child.getPath());
        boolean doMin = (child.getMin() > 0) && (based == null || (child.getMin() != based.getMin()));
        boolean doMax = child.hasMax() && !child.getMax().equals("*") && (based == null || (!child.getMax().equals(based.getMax())));
        Slicer slicer = slicing == null ? new Slicer(true) : generateSlicer(child, slicing, structure);
        if (slicer.check) {
            if (doMin || doMax) {
                Section s = sch.section(xpath);
                Rule r = s.rule(xpath);
                if (doMin)
                    r.assrt("count(f:" + name + slicer.criteria + ") >= " + Integer.toString(child.getMin()), name + slicer.name + ": minimum cardinality of '" + name + "' is " + Integer.toString(child.getMin()));
                if (doMax)
                    r.assrt("count(f:" + name + slicer.criteria + ") <= " + child.getMax(), name + slicer.name + ": maximum cardinality of '" + name + "' is " + child.getMax());
            }
        }
    }
    for (ElementDefinitionConstraintComponent inv : ed.getConstraint()) {
        if (inv.hasXpath()) {
            Section s = sch.section(ed.getPath());
            Rule r = s.rule(xpath);
            r.assrt(inv.getXpath(), (inv.hasId() ? inv.getId() + ": " : "") + inv.getHuman() + (inv.hasUserData(IS_DERIVED) ? " (inherited)" : ""));
        }
    }
    for (ElementDefinition child : children) {
        String name = tail(child.getPath());
        generateForChildren(sch, xpath + "/f:" + name, child, structure, base);
    }
}
Also used : ElementDefinitionSlicingComponent(org.hl7.fhir.r4.model.ElementDefinition.ElementDefinitionSlicingComponent) ElementDefinition(org.hl7.fhir.r4.model.ElementDefinition) TypeDerivationRule(org.hl7.fhir.r4.model.StructureDefinition.TypeDerivationRule) Rule(org.hl7.fhir.utilities.xml.SchematronWriter.Rule) Section(org.hl7.fhir.utilities.xml.SchematronWriter.Section) ElementDefinitionConstraintComponent(org.hl7.fhir.r4.model.ElementDefinition.ElementDefinitionConstraintComponent)

Aggregations

ArrayList (java.util.ArrayList)21 Element (org.w3c.dom.Element)11 IOException (java.io.IOException)10 LinkedHashMap (java.util.LinkedHashMap)9 Section (org.hl7.fhir.utilities.xml.SchematronWriter.Section)9 POCDMT000002UK01Section (uk.nhs.connect.iucds.cda.ucr.POCDMT000002UK01Section)8 Rule (org.hl7.fhir.utilities.xml.SchematronWriter.Rule)7 POCDMT000002UK01Component3 (uk.nhs.connect.iucds.cda.ucr.POCDMT000002UK01Component3)7 Reference (org.hl7.fhir.dstu3.model.Reference)6 XhtmlNode (org.hl7.fhir.utilities.xhtml.XhtmlNode)6 SectionComponent (org.hl7.fhir.dstu3.model.Composition.SectionComponent)5 CodeableConcept (org.hl7.fhir.r4.model.CodeableConcept)5 BeforeEach (org.junit.jupiter.api.BeforeEach)5 HashMap (java.util.HashMap)4 NotImplementedException (org.apache.commons.lang3.NotImplementedException)4 IdType (org.hl7.fhir.dstu3.model.IdType)4 Section (org.hl7.fhir.utilities.turtle.Turtle.Section)4 Subject (org.hl7.fhir.utilities.turtle.Turtle.Subject)4 POCDMT000002UK01Component5 (uk.nhs.connect.iucds.cda.ucr.POCDMT000002UK01Component5)4 FileNotFoundException (java.io.FileNotFoundException)3