Examples with Section org.hl7.fhir.utilities.xml.SchematronWriter.Section used on opensource projects

Example 46 with Section

use of org.hl7.fhir.utilities.xml.SchematronWriter.Section in project kindling by HL7.

the class SchematronGenerator method insertGlobalRules.

private void insertGlobalRules(SchematronWriter sch) throws IOException {
    Section s = sch.section("Global");
    s.rule("f:*").assrt("@value|f:*|h:div", "global-1: All FHIR elements must have a @value or children");
    s.rule("f:extension").assrt("exists(f:extension)!=exists(f:*[starts-with(local-name(.), 'value')])", "ext-1: Must have either extensions or value[x], not both");
    s.rule("f:modifierExtension").assrt("exists(f:extension)!=exists(f:*[starts-with(local-name(.), 'value')])", "ext-1: Must have either extensions or value[x], not both");
}

Example 47 with Section

use of org.hl7.fhir.utilities.xml.SchematronWriter.Section in project kindling by HL7.

the class SchematronGenerator method generateInvariants.

private void generateInvariants(Section section, String path, ElementDefn ed, Definitions definitions, List<String> parents, String name) throws Exception {
    if (definitions.getBaseResources().containsKey(ed.typeCode()))
        generateInvariants(section, path, definitions.getBaseResources().get(ed.typeCode()).getRoot(), definitions, parents, name);
    // logger.log("generate: "+path+" ("+parents.toString()+")");
    if (name.contains("("))
        name = name.substring(0, name.indexOf("("));
    if (ed.getElements().size() > 0) {
        path = path == null ? "f:" + name : path + (recursesToSelf(ed) ? "/" : "") + "/f:" + name;
        genInvs(section, path, ed);
        genChildren(section, path, null, ed, definitions, parents);
    } else {
        for (TypeRef tr : ed.typeCode().equals("*") ? allTypes() : ed.getTypes()) {
            String en = name;
            if (en.endsWith("[x]")) {
                if (definitions.getConstraints().containsKey(tr.getName()))
                    en = en.replace("[x]", definitions.getConstraints().get(tr.getName()).getBaseType());
                else
                    en = en.replace("[x]", Utilities.capitalize(tr.summary()));
            }
            if (en.contains("("))
                en = en.substring(0, en.indexOf("("));
            if (en.equals("div"))
                en = "h:" + en;
            else
                en = "f:" + en;
            String sPath = path == null ? en : path + "/" + en;
            genInvs(section, sPath, ed);
            ElementDefn td = getType(tr, definitions);
            if (td != null) {
                genInvs(section, sPath, td);
                genChildren(section, sPath, tr.summary(), td, definitions, parents);
            }
        }
    }
}

Example 48 with Section

use of org.hl7.fhir.utilities.xml.SchematronWriter.Section in project kindling by HL7.

the class SchematronGenerator method generate.

public void generate(OutputStream out, Definitions definitions) throws Exception {
    SchematronWriter sch = new SchematronWriter(out, SchematronType.ALL_RESOURCES, "All Resources");
    insertGlobalRules(sch);
    for (String rn : definitions.sortedResourceNames()) {
        ResourceDefn root = definitions.getResources().get(rn);
        Section s = sch.section(root.getName());
        ArrayList<String> parents = new ArrayList<String>();
        generateInvariants(s, null, root.getRoot(), definitions, parents, root.getName());
    }
    Set<StructureDefinition> processed = new HashSet<StructureDefinition>();
    for (StructureDefinition exd : page.getWorkerContext().getExtensionDefinitions()) {
        if (exd.getSnapshot().getElement().get(0).hasConstraint() && !processed.contains(exd)) {
            processed.add(exd);
            Section s = sch.section("Extension: " + exd.getName());
            Rule r = s.rule("f:" + (exd.getSnapshot().getElementFirstRep().getIsModifier() ? "modifierExtension" : "extension") + "[@url='" + exd.getUrl() + "']");
            for (ElementDefinitionConstraintComponent inv : exd.getSnapshot().getElement().get(0).getConstraint()) {
                if (!isGlobal(inv.getKey()))
                    r.assrt(inv.getXpath().replace("\"", "'"), inv.getKey() + ": " + inv.getHuman());
            }
        }
    }
    sch.dump();
    sch.close();
}

Example 49 with Section

use of org.hl7.fhir.utilities.xml.SchematronWriter.Section in project kindling by HL7.

the class PageProcessor method checkFormat.

private void checkFormat(String filename, String res, ResourceDefn r) throws FHIRException {
    XhtmlNode doc;
    try {
        doc = new XhtmlParser().parse("<div>" + res + "</div>", null).getFirstElement();
        if (doc.getFirstElement() == null || !doc.getFirstElement().getName().equals("div"))
            log("file \"" + filename + "\": root element should be 'div'", LogMessageType.Error);
        else if (doc.getFirstElement() == null) {
            log("file \"" + filename + "\": there is no 'Scope and Usage'", LogMessageType.Error);
        } else {
            XhtmlNode scope = null;
            XhtmlNode context = null;
            for (XhtmlNode x : doc.getChildNodes()) {
                if (x.getNodeType() == NodeType.Element) {
                    if (!x.getName().equals("div")) {
                        log("file \"" + filename + "\": all child elements of the root div should be 'div's too (found '" + x.getName() + "')", LogMessageType.Error);
                        return;
                    } else if (x.getChildNodes().isEmpty()) {
                        log("file \"" + filename + "\": div/div[" + Integer.toString(doc.getChildNodes().indexOf(x)) + "] must have at least an h2", LogMessageType.Error);
                        return;
                    } else if (!isFirstChildElementH2(x)) {
                        log("file \"" + filename + "\": div/div[" + Integer.toString(doc.getChildNodes().indexOf(x)) + "] must start with an h2", LogMessageType.Error);
                        return;
                    } else {
                        XhtmlNode fn = getH2Element(x);
                        String s = fn.allText();
                        if (!((s.equals("Scope and Usage")) || (s.equals("Boundaries and Relationships")) || (s.equals("Background and Context")))) {
                            log("file \"" + filename + "\": div/div[" + Integer.toString(doc.getChildNodes().indexOf(x)) + "]/h2 must be either 'Scope and Usage', 'Boundaries and Relationships', or 'Background and Context'", LogMessageType.Error);
                            return;
                        } else {
                            if (scope == null) {
                                if (s.equals("Scope and Usage")) {
                                    scope = x;
                                    if (r != null)
                                        r.setRequirements(new XhtmlComposer(XhtmlComposer.HTML).composePlainText(x));
                                } else {
                                    log("file \"" + filename + "\": 'Scope and Usage' must come first", LogMessageType.Error);
                                    return;
                                }
                                if (s.equals("Boundaries and Relationships")) {
                                    if (context != null) {
                                        log("file \"" + filename + "\": 'Boundaries and Relationships' must come first before 'Background and Context'", LogMessageType.Error);
                                        return;
                                    }
                                }
                                if (s.equals("Background and Context"))
                                    context = x;
                            }
                        }
                        boolean found = false;
                        for (XhtmlNode n : x.getChildNodes()) {
                            if (!found)
                                found = n == fn;
                            else {
                                if ("h1".equals(n.getName()) || "h2".equals(n.getName())) {
                                    log("file \"" + filename + "\": content of a <div> inner section cannot contain h1 or h2 headings", LogMessageType.Error);
                                    return;
                                }
                            }
                        }
                    }
                }
            }
        }
        List<String> allowed = Arrays.asList("div", "h2", "h3", "h4", "h5", "i", "b", "code", "pre", "blockquote", "p", "a", "img", "table", "thead", "tbody", "tr", "th", "td", "ol", "ul", "li", "br", "span", "em", "strong");
        iterateAllChildNodes(doc, allowed);
    } catch (Exception e) {
        throw new FHIRException("Error processing " + filename + ": " + e.getMessage(), e);
    }
}

Example 50 with Section

use of org.hl7.fhir.utilities.xml.SchematronWriter.Section in project kindling by HL7.

the class SourceParser method loadResource.

private ResourceDefn loadResource(String n, Map<String, ResourceDefn> map, boolean isAbstract, boolean isTemplate, String t, boolean isInterface) throws Exception {
    String folder = n;
    WorkGroup wg = definitions.getWorkgroups().get(ini.getStringProperty("workgroups", n));
    if (wg == null)
        throw new Exception("No Workgroup found for resource " + n + ": '" + ini.getStringProperty("workgroups", n) + "'");
    File f = new File(Utilities.path(srcDir, folder, n + ".svg"));
    if (isTemplate) {
        File spreadsheet = new CSFile((srcDir) + folder + File.separatorChar + n + "-spreadsheet.xml");
        OldSpreadsheetParser sparser = new OldSpreadsheetParser("core", new CSFileInputStream(spreadsheet), spreadsheet.getName(), spreadsheet.getAbsolutePath(), definitions, srcDir, logger, registry, version, context, genDate, isAbstract, page, false, ini, wg, definitions.getProfileIds(), fpUsages, page.getConceptMaps(), exceptionIfExcelNotNormalised, page.packageInfo(), page.getRc());
        ResourceDefn root;
        try {
            root = sparser.parseResource(isTemplate);
        } catch (Exception e) {
            throw new Exception("Error Parsing Resource " + n + ": " + e.getMessage(), e);
        }
        root.setAbstract(isAbstract);
        root.setInterface(isInterface);
        errors.addAll(sparser.getErrors());
        setResourceProps(n, wg, root);
        String sc = ini.getStringProperty("security-categorization", root.getName().toLowerCase());
        if (sc != null) {
            root.setSecurityCategorization(SecurityCategorization.fromCode(sc));
        } else if (!Utilities.existsInList(root.getName(), "Resource", "DomainResource", "CanonicalResource", "MetadataResource", "MetadataPattern"))
            throw new Exception("Must have an entry in the security-categorization section of fhir.ini for the resource " + root.getName());
        for (EventDefn e : sparser.getEvents()) {
            processEvent(e, root.getRoot());
        }
        if (map != null) {
            map.put(root.getName(), root);
        }
        if (!isTemplate) {
            definitions.getKnownResources().put(root.getName(), new DefinedCode(root.getName(), root.getRoot().getDefinition(), n));
            context.getResourceNames().add(root.getName());
        }
        if (root.getNormativeVersion() != null || root.getNormativePackage() != null) {
            root.setStatus(StandardsStatus.NORMATIVE);
        }
        if (f.exists()) {
            parseSvgFile(f, root.getLayout(), f.getName());
        }
        if (map != null) {
            map.put(root.getName(), root);
        }
        return root;
    } else {
        try {
            new SpreadSheetReloader(context, srcDir, t, version.toCode()).process();
        } catch (Exception e) {
            System.out.println("Error loading spreadsheet for resource " + t + ": " + e.getMessage());
        }
        new SpreadSheetCreator(context, srcDir, t).generateSpreadsheet();
        ResourceDefn rootNew = new ResourceParser(srcDir, definitions, context, wg, registry, version.toCode(), page.getConceptMaps()).parse(n, t);
        if (f.exists()) {
            parseSvgFile(f, rootNew.getLayout(), f.getName());
        }
        if (!isTemplate) {
            definitions.getKnownResources().put(rootNew.getName(), new DefinedCode(rootNew.getName(), rootNew.getRoot().getDefinition(), n));
            context.getResourceNames().add(rootNew.getName());
        }
        setResourceProps(n, wg, rootNew);
        if (map != null) {
            map.put(rootNew.getName(), rootNew);
        }
        return rootNew;
    }
}