Examples with Server org.hl7.gravity.refimpl.sdohexchange.model.Server used on opensource projects

Example 91 with Server

use of org.hl7.gravity.refimpl.sdohexchange.model.Server in project org.hl7.fhir.core by hapifhir.

the class ClientUtils method unmarshalFeed.

/**
 * Unmarshals Bundle from response stream.
 *
 * @param response
 * @return
 */
protected Bundle unmarshalFeed(HttpResponse response, String format) {
    Bundle feed = null;
    byte[] cnt = log(response);
    String contentType = response.getHeaders("Content-Type")[0].getValue();
    OperationOutcome error = null;
    try {
        if (cnt != null) {
            if (contentType.contains(ResourceFormat.RESOURCE_XML.getHeader()) || contentType.contains("text/xml+fhir")) {
                Resource rf = getParser(format).parse(cnt);
                if (rf instanceof Bundle)
                    feed = (Bundle) rf;
                else if (rf instanceof OperationOutcome && hasError((OperationOutcome) rf)) {
                    error = (OperationOutcome) rf;
                } else {
                    throw new EFhirClientException("Error reading server response: a resource was returned instead");
                }
            }
        }
    } catch (IOException ioe) {
        throw new EFhirClientException("Error reading Http Response", ioe);
    } catch (Exception e) {
        throw new EFhirClientException("Error parsing response message", e);
    }
    if (error != null) {
        throw new EFhirClientException("Error from server: " + ResourceUtilities.getErrorDescription(error), error);
    }
    return feed;
}

Example 92 with Server

use of org.hl7.gravity.refimpl.sdohexchange.model.Server in project org.hl7.fhir.core by hapifhir.

the class FHIRToolingClient method operateType.

// 
// public <T extends Resource> boolean delete(Class<T> resourceClass, String id) {
// try {
// return utils.issueDeleteRequest(resourceAddress.resolveGetUriFromResourceClassAndId(resourceClass, id), proxy);
// } catch(Exception e) {
// throw new EFhirClientException("An error has occurred while trying to delete this resource", e);
// }
// 
// }
// 
// public <T extends Resource> OperationOutcome create(Class<T> resourceClass, T resource) {
// ResourceRequest<T> resourceRequest = null;
// try {
// List<Header> headers = null;
// resourceRequest = utils.issuePostRequest(resourceAddress.resolveGetUriFromResourceClass(resourceClass),utils.getResourceAsByteArray(resource, false, isJson(getPreferredResourceFormat())), getPreferredResourceFormat(), headers, proxy);
// resourceRequest.addSuccessStatus(201);
// if(resourceRequest.isUnsuccessfulRequest()) {
// throw new EFhirClientException("Server responded with HTTP error code " + resourceRequest.getHttpStatus(), (OperationOutcome)resourceRequest.getPayload());
// }
// } catch(Exception e) {
// handleException("An error has occurred while trying to create this resource", e);
// }
// OperationOutcome operationOutcome = null;;
// try {
// operationOutcome = (OperationOutcome)resourceRequest.getPayload();
// ResourceAddress.ResourceVersionedIdentifier resVersionedIdentifier =
// ResourceAddress.parseCreateLocation(resourceRequest.getLocation());
// OperationOutcomeIssueComponent issue = operationOutcome.addIssue();
// issue.setSeverity(IssueSeverity.INFORMATION);
// issue.setUserData(ResourceAddress.ResourceVersionedIdentifier.class.toString(),
// resVersionedIdentifier);
// return operationOutcome;
// } catch(ClassCastException e) {
// // some server (e.g. grahams) returns the resource directly
// operationOutcome = new OperationOutcome();
// OperationOutcomeIssueComponent issue = operationOutcome.addIssue();
// issue.setSeverity(IssueSeverity.INFORMATION);
// issue.setUserData(ResourceRequest.class.toString(),
// resourceRequest.getPayload());
// return operationOutcome;
// }
// }
// 
// public <T extends Resource> Bundle history(Calendar lastUpdate, Class<T> resourceClass, String id) {
// Bundle history = null;
// try {
// history = utils.issueGetFeedRequest(resourceAddress.resolveGetHistoryForResourceId(resourceClass, id, lastUpdate, maxResultSetSize), getPreferredResourceFormat(), proxy);
// } catch (Exception e) {
// handleException("An error has occurred while trying to retrieve history information for this resource", e);
// }
// return history;
// }
// 
// public <T extends Resource> Bundle history(Date lastUpdate, Class<T> resourceClass, String id) {
// Bundle history = null;
// try {
// history = utils.issueGetFeedRequest(resourceAddress.resolveGetHistoryForResourceId(resourceClass, id, lastUpdate, maxResultSetSize), getPreferredResourceFormat(), proxy);
// } catch (Exception e) {
// handleException("An error has occurred while trying to retrieve history information for this resource", e);
// }
// return history;
// }
// 
// 
// public <T extends Resource> Bundle history(Calendar lastUpdate, Class<T> resourceClass) {
// Bundle history = null;
// try {
// history = utils.issueGetFeedRequest(resourceAddress.resolveGetHistoryForResourceType(resourceClass, lastUpdate, maxResultSetSize), getPreferredResourceFormat(), proxy);
// } catch (Exception e) {
// handleException("An error has occurred while trying to retrieve history information for this resource type", e);
// }
// return history;
// }
// 
// 
// public <T extends Resource> Bundle history(Date lastUpdate, Class<T> resourceClass) {
// Bundle history = null;
// try {
// history = utils.issueGetFeedRequest(resourceAddress.resolveGetHistoryForResourceType(resourceClass, lastUpdate, maxResultSetSize), getPreferredResourceFormat(), proxy);
// } catch (Exception e) {
// handleException("An error has occurred while trying to retrieve history information for this resource type", e);
// }
// return history;
// }
// 
// 
// public <T extends Resource> Bundle history(Class<T> resourceClass) {
// Bundle history = null;
// try {
// history = utils.issueGetFeedRequest(resourceAddress.resolveGetHistoryForResourceType(resourceClass, maxResultSetSize), getPreferredResourceFormat(), proxy);
// } catch (Exception e) {
// handleException("An error has occurred while trying to retrieve history information for this resource type", e);
// }
// return history;
// }
// 
// 
// public <T extends Resource> Bundle history(Class<T> resourceClass, String id) {
// Bundle history = null;
// try {
// history = utils.issueGetFeedRequest(resourceAddress.resolveGetHistoryForResourceId(resourceClass, id, maxResultSetSize), getPreferredResourceFormat(), proxy);
// } catch (Exception e) {
// handleException("An error has occurred while trying to retrieve history information for this resource", e);
// }
// return history;
// }
// 
// 
// public <T extends Resource> Bundle history(Date lastUpdate) {
// Bundle history = null;
// try {
// history = utils.issueGetFeedRequest(resourceAddress.resolveGetHistoryForAllResources(lastUpdate, maxResultSetSize), getPreferredResourceFormat(), proxy);
// } catch (Exception e) {
// handleException("An error has occurred while trying to retrieve history since last update",e);
// }
// return history;
// }
// 
// 
// public <T extends Resource> Bundle history(Calendar lastUpdate) {
// Bundle history = null;
// try {
// history = utils.issueGetFeedRequest(resourceAddress.resolveGetHistoryForAllResources(lastUpdate, maxResultSetSize), getPreferredResourceFormat(), proxy);
// } catch (Exception e) {
// handleException("An error has occurred while trying to retrieve history since last update",e);
// }
// return history;
// }
// 
// 
// public <T extends Resource> Bundle history() {
// Bundle history = null;
// try {
// history = utils.issueGetFeedRequest(resourceAddress.resolveGetHistoryForAllResources(maxResultSetSize), getPreferredResourceFormat(), proxy);
// } catch (Exception e) {
// handleException("An error has occurred while trying to retrieve history since last update",e);
// }
// return history;
// }
// 
// 
// public <T extends Resource> Bundle search(Class<T> resourceClass, Map<String, String> parameters) {
// Bundle searchResults = null;
// try {
// searchResults = utils.issueGetFeedRequest(resourceAddress.resolveSearchUri(resourceClass, parameters), getPreferredResourceFormat(), proxy);
// } catch (Exception e) {
// handleException("Error performing search with parameters " + parameters, e);
// }
// return searchResults;
// }
// 
// 
// public <T extends Resource> Bundle searchPost(Class<T> resourceClass, T resource, Map<String, String> parameters) {
// Bundle searchResults = null;
// try {
// searchResults = utils.issuePostFeedRequest(resourceAddress.resolveSearchUri(resourceClass, new HashMap<String, String>()), parameters, "src", resource, getPreferredResourceFormat());
// } catch (Exception e) {
// handleException("Error performing search with parameters " + parameters, e);
// }
// return searchResults;
// }
public <T extends Resource> Parameters operateType(Class<T> resourceClass, String name, Parameters params) {
    boolean complex = false;
    for (ParametersParameterComponent p : params.getParameter()) complex = complex || !(p.getValue() instanceof PrimitiveType);
    Parameters searchResults = null;
    String ps = "";
    try {
        if (!complex)
            for (ParametersParameterComponent p : params.getParameter()) if (p.getValue() instanceof PrimitiveType)
                ps += p.getName() + "=" + Utilities.encodeUri(((PrimitiveType) p.getValue()).asStringValue()) + "&";
        ResourceRequest<T> result;
        if (complex)
            result = utils.issuePostRequest(resourceAddress.resolveOperationURLFromClass(resourceClass, name, ps), utils.getResourceAsByteArray(params, false, isJson(getPreferredResourceFormat())), getPreferredResourceFormat(), TIMEOUT_OPERATION_LONG);
        else
            result = utils.issueGetResourceRequest(resourceAddress.resolveOperationURLFromClass(resourceClass, name, ps), getPreferredResourceFormat(), TIMEOUT_OPERATION_LONG);
        // gone
        result.addErrorStatus(410);
        // unknown
        result.addErrorStatus(404);
        // Only one for now
        result.addSuccessStatus(200);
        if (result.isUnsuccessfulRequest())
            throw new EFhirClientException("Server returned error code " + result.getHttpStatus(), (OperationOutcome) result.getPayload());
        if (result.getPayload() instanceof Parameters)
            return (Parameters) result.getPayload();
        else {
            Parameters p_out = new Parameters();
            p_out.addParameter().setName("return").setResource(result.getPayload());
            return p_out;
        }
    } catch (Exception e) {
        handleException("Error performing 2b operation '" + name + ": " + e.getMessage() + "' (parameters = \"" + ps + "\")", e);
    }
    return null;
}

Example 93 with Server

use of org.hl7.gravity.refimpl.sdohexchange.model.Server in project org.hl7.fhir.core by hapifhir.

the class FHIRToolingClient method initializeClosure.

public ConceptMap initializeClosure(String name) {
    Parameters params = new Parameters();
    params.addParameter().setName("name").setValue(new StringType(name));
    List<Header> headers = null;
    ResourceRequest<Resource> result = utils.issuePostRequest(resourceAddress.resolveOperationUri(null, "closure", new HashMap<String, String>()), utils.getResourceAsByteArray(params, false, isJson(getPreferredResourceFormat())), getPreferredResourceFormat(), headers, TIMEOUT_NORMAL);
    // gone
    result.addErrorStatus(410);
    // unknown
    result.addErrorStatus(404);
    result.addErrorStatus(405);
    // Unprocessable Entity
    result.addErrorStatus(422);
    result.addSuccessStatus(200);
    result.addSuccessStatus(201);
    if (result.isUnsuccessfulRequest()) {
        throw new EFhirClientException("Server returned error code " + result.getHttpStatus(), (OperationOutcome) result.getPayload());
    }
    return (ConceptMap) result.getPayload();
}

Example 94 with Server

use of org.hl7.gravity.refimpl.sdohexchange.model.Server in project org.hl7.fhir.core by hapifhir.

the class ImplicitValueSets method buildLoincValueSet.

private static ValueSet buildLoincValueSet(String url) {
    if (url.startsWith("http://loinc.org/vs/LL")) {
        ValueSet vs = new ValueSet();
        vs.setUrl(url);
        vs.setStatus(PublicationStatus.ACTIVE);
        vs.setName("LoincVS" + url.substring(21).replace("-", ""));
        vs.setTitle("Loinc Implicit ValueSet for " + url.substring(21));
        // todo: populate the compose fro the terminology server
        return vs;
    } else if (url.equals("http://loinc.org/vs")) {
        ValueSet vs = new ValueSet();
        vs.setUrl(url);
        vs.setStatus(PublicationStatus.ACTIVE);
        vs.setName("LoincVSAll");
        vs.setTitle("Loinc Implicit ValueSet : all codes");
        // todo: populate the compose for the terminology server
        return vs;
    } else {
        return null;
    }
}

Example 95 with Server

use of org.hl7.gravity.refimpl.sdohexchange.model.Server in project org.hl7.fhir.core by hapifhir.

the class BatchLoader method main.

public static void main(String[] args) throws IOException, Exception {
    if (args.length < 3) {
        System.out.println("Batch uploader takes 3 parameters in order: server base url, file/folder to upload, and batch size");
    } else {
        String server = args[0];
        String file = args[1];
        int size = Integer.parseInt(args[2]);
        if (file.endsWith(".xml")) {
            throw new FHIRException("Unimplemented file type " + file);
        } else if (file.endsWith(".json")) {
            throw new FHIRException("Unimplemented file type " + file);
        // } else if (file.endsWith(".zip")) {
        // LoadZipFile(server, file, p, size, 0, -1);
        } else if (new File(file).isDirectory()) {
            LoadDirectory(server, file, size);
        } else
            throw new FHIRException("Unknown file type " + file);
    }
}