Examples with Server org.hl7.gravity.refimpl.sdohexchange.model.Server used on opensource projects

Example 96 with Server

use of org.hl7.gravity.refimpl.sdohexchange.model.Server in project org.hl7.fhir.core by hapifhir.

the class BatchLoader method LoadDirectory.

private static void LoadDirectory(String server, String folder, int size) throws IOException, Exception {
    System.out.print("Connecting to " + server + ".. ");
    FHIRToolingClient client = new FHIRToolingClient(server, "fhir/batch-loader");
    System.out.println("Done");
    IniFile ini = new IniFile(Utilities.path(folder, "batch-load-progress.ini"));
    for (File f : new File(folder).listFiles()) {
        if (f.getName().endsWith(".json") || f.getName().endsWith(".xml")) {
            if (!ini.getBooleanProperty("finished", f.getName())) {
                sendFile(client, f, size, ini);
            }
        }
    }
}

Example 97 with Server

use of org.hl7.gravity.refimpl.sdohexchange.model.Server in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method validateCodeBatch.

@Override
public void validateCodeBatch(ValidationOptions options, List<? extends CodingValidationRequest> codes, ValueSet vs) {
    if (options == null) {
        options = ValidationOptions.defaults();
    }
    // 3rd pass: hit the server
    for (CodingValidationRequest t : codes) {
        t.setCacheToken(txCache != null ? txCache.generateValidationToken(options, t.getCoding(), vs) : null);
        if (t.getCoding().hasSystem()) {
            codeSystemsUsed.add(t.getCoding().getSystem());
        }
        if (txCache != null) {
            t.setResult(txCache.getValidation(t.getCacheToken()));
        }
    }
    if (options.isUseClient()) {
        for (CodingValidationRequest t : codes) {
            if (!t.hasResult()) {
                try {
                    ValueSetCheckerSimple vsc = new ValueSetCheckerSimple(options, vs, this);
                    ValidationResult res = vsc.validateCode(t.getCoding());
                    if (txCache != null) {
                        txCache.cacheValidation(t.getCacheToken(), res, TerminologyCache.TRANSIENT);
                    }
                    t.setResult(res);
                } catch (Exception e) {
                }
            }
        }
    }
    for (CodingValidationRequest t : codes) {
        if (!t.hasResult()) {
            String codeKey = t.getCoding().hasVersion() ? t.getCoding().getSystem() + "|" + t.getCoding().getVersion() : t.getCoding().getSystem();
            if (!options.isUseServer()) {
                t.setResult(new ValidationResult(IssueSeverity.WARNING, formatMessage(I18nConstants.UNABLE_TO_VALIDATE_CODE_WITHOUT_USING_SERVER), TerminologyServiceErrorClass.BLOCKED_BY_OPTIONS));
            } else if (unsupportedCodeSystems.contains(codeKey)) {
                t.setResult(new ValidationResult(IssueSeverity.ERROR, formatMessage(I18nConstants.TERMINOLOGY_TX_SYSTEM_NOTKNOWN, t.getCoding().getSystem()), TerminologyServiceErrorClass.CODESYSTEM_UNSUPPORTED));
            } else if (noTerminologyServer) {
                t.setResult(new ValidationResult(IssueSeverity.ERROR, formatMessage(I18nConstants.ERROR_VALIDATING_CODE_RUNNING_WITHOUT_TERMINOLOGY_SERVICES), TerminologyServiceErrorClass.NOSERVICE));
            }
        }
    }
    if (expParameters == null)
        throw new Error(formatMessage(I18nConstants.NO_EXPANSIONPROFILE_PROVIDED));
    // for those that that failed, we try to validate on the server
    Bundle batch = new Bundle();
    batch.setType(BundleType.BATCH);
    Set<String> systems = new HashSet<>();
    for (CodingValidationRequest t : codes) {
        if (!t.hasResult()) {
            Parameters pIn = new Parameters();
            pIn.addParameter().setName("coding").setValue(t.getCoding());
            if (options.isGuessSystem()) {
                pIn.addParameter().setName("implySystem").setValue(new BooleanType(true));
            }
            if (vs != null) {
                pIn.addParameter().setName("valueSet").setResource(vs);
            }
            pIn.addParameter().setName("profile").setResource(expParameters);
            setTerminologyOptions(options, pIn);
            BundleEntryComponent be = batch.addEntry();
            be.setResource(pIn);
            be.getRequest().setMethod(HTTPVerb.POST);
            be.getRequest().setUrl("CodeSystem/$validate-code");
            be.setUserData("source", t);
            systems.add(t.getCoding().getSystem());
        }
    }
    if (batch.getEntry().size() > 0) {
        tlog("$batch validate for " + batch.getEntry().size() + " codes on systems " + systems.toString());
        if (txClient == null) {
            throw new FHIRException(formatMessage(I18nConstants.ATTEMPT_TO_USE_TERMINOLOGY_SERVER_WHEN_NO_TERMINOLOGY_SERVER_IS_AVAILABLE));
        }
        if (txLog != null) {
            txLog.clearLastId();
        }
        Bundle resp = txClient.validateBatch(batch);
        for (int i = 0; i < batch.getEntry().size(); i++) {
            CodingValidationRequest t = (CodingValidationRequest) batch.getEntry().get(i).getUserData("source");
            BundleEntryComponent r = resp.getEntry().get(i);
            if (r.getResource() instanceof Parameters) {
                t.setResult(processValidationResult((Parameters) r.getResource()));
                if (txCache != null) {
                    txCache.cacheValidation(t.getCacheToken(), t.getResult(), TerminologyCache.PERMANENT);
                }
            } else {
                t.setResult(new ValidationResult(IssueSeverity.ERROR, getResponseText(r.getResource())).setTxLink(txLog == null ? null : txLog.getLastId()));
            }
        }
    }
}

Example 98 with Server

use of org.hl7.gravity.refimpl.sdohexchange.model.Server in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method validateCode.

@Override
public ValidationResult validateCode(ValidationOptions options, CodeableConcept code, ValueSet vs) {
    CacheToken cacheToken = txCache.generateValidationToken(options, code, vs);
    ValidationResult res = txCache.getValidation(cacheToken);
    if (res != null) {
        return res;
    }
    for (Coding c : code.getCoding()) {
        if (c.hasSystem()) {
            codeSystemsUsed.add(c.getSystem());
        }
    }
    if (options.isUseClient()) {
        // ok, first we try to validate locally
        try {
            ValueSetCheckerSimple vsc = new ValueSetCheckerSimple(options, vs, this);
            res = vsc.validateCode(code);
            txCache.cacheValidation(cacheToken, res, TerminologyCache.TRANSIENT);
            return res;
        } catch (Exception e) {
            if (e instanceof NoTerminologyServiceException) {
                return new ValidationResult(IssueSeverity.ERROR, "No Terminology Service", TerminologyServiceErrorClass.NOSERVICE);
            }
        }
    }
    if (!options.isUseServer()) {
        return new ValidationResult(IssueSeverity.WARNING, "Unable to validate code without using server", TerminologyServiceErrorClass.BLOCKED_BY_OPTIONS);
    }
    // if that failed, we try to validate on the server
    if (noTerminologyServer) {
        return new ValidationResult(IssueSeverity.ERROR, "Error validating code: running without terminology services", TerminologyServiceErrorClass.NOSERVICE);
    }
    tlog("$validate " + txCache.summary(code) + " for " + txCache.summary(vs));
    try {
        Parameters pIn = new Parameters();
        pIn.addParameter().setName("codeableConcept").setValue(code);
        setTerminologyOptions(options, pIn);
        res = validateOnServer(vs, pIn, options);
    } catch (Exception e) {
        res = new ValidationResult(IssueSeverity.ERROR, e.getMessage() == null ? e.getClass().getName() : e.getMessage()).setTxLink(txLog.getLastId());
    }
    txCache.cacheValidation(cacheToken, res, TerminologyCache.PERMANENT);
    return res;
}

Example 99 with Server

use of org.hl7.gravity.refimpl.sdohexchange.model.Server in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method supportsSystem.

@Override
public boolean supportsSystem(String system) throws TerminologyServiceException {
    synchronized (lock) {
        if (codeSystems.has(system) && codeSystems.get(system).getContent() != CodeSystemContentMode.NOTPRESENT) {
            return true;
        } else if (supportedCodeSystems.contains(system)) {
            return true;
        } else if (system.startsWith("http://example.org") || system.startsWith("http://acme.com") || system.startsWith("http://hl7.org/fhir/valueset-") || system.startsWith("urn:oid:")) {
            return false;
        } else {
            if (noTerminologyServer) {
                return false;
            }
            if (txcaps == null) {
                try {
                    log("Terminology server: Check for supported code systems for " + system);
                    setTxCaps(txClient.getTerminologyCapabilities());
                } catch (Exception e) {
                    if (canRunWithoutTerminology) {
                        noTerminologyServer = true;
                        log("==============!! Running without terminology server !! ==============");
                        if (txClient != null) {
                            log("txServer = " + txClient.getAddress());
                            log("Error = " + e.getMessage() + "");
                        }
                        log("=====================================================================");
                        return false;
                    } else {
                        e.printStackTrace();
                        throw new TerminologyServiceException(e);
                    }
                }
                if (supportedCodeSystems.contains(system)) {
                    return true;
                }
            }
        }
        return false;
    }
}

Example 100 with Server

use of org.hl7.gravity.refimpl.sdohexchange.model.Server in project org.hl7.fhir.core by hapifhir.

the class FHIRToolingClient method operateType.

public <T extends Resource> Parameters operateType(Class<T> resourceClass, String name, Parameters params) {
    boolean complex = false;
    for (ParametersParameterComponent p : params.getParameter()) complex = complex || !(p.getValue() instanceof PrimitiveType);
    String ps = "";
    try {
        if (!complex)
            for (ParametersParameterComponent p : params.getParameter()) if (p.getValue() instanceof PrimitiveType)
                ps += p.getName() + "=" + Utilities.encodeUri(((PrimitiveType) p.getValue()).asStringValue()) + "&";
        ResourceRequest<T> result;
        URI url = resourceAddress.resolveOperationURLFromClass(resourceClass, name, ps);
        if (complex) {
            byte[] body = ByteUtils.resourceToByteArray(params, false, isJson(getPreferredResourceFormat()));
            result = client.issuePostRequest(url, body, getPreferredResourceFormat(), generateHeaders(), "POST " + resourceClass.getName() + "/$" + name, TIMEOUT_OPERATION_LONG);
        } else {
            result = client.issueGetResourceRequest(url, getPreferredResourceFormat(), generateHeaders(), "GET " + resourceClass.getName() + "/$" + name, TIMEOUT_OPERATION_LONG);
        }
        if (result.isUnsuccessfulRequest()) {
            throw new EFhirClientException("Server returned error code " + result.getHttpStatus(), (OperationOutcome) result.getPayload());
        }
        if (result.getPayload() instanceof Parameters) {
            return (Parameters) result.getPayload();
        } else {
            Parameters p_out = new Parameters();
            p_out.addParameter().setName("return").setResource(result.getPayload());
            return p_out;
        }
    } catch (Exception e) {
        handleException("Error performing tx5 operation '" + name + ": " + e.getMessage() + "' (parameters = \"" + ps + "\")", e);
    }
    return null;
}