Examples with CD org.hl7.v3.CD used on opensource projects

Example 21 with CD

use of org.hl7.v3.CD in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method genInclude.

private boolean genInclude(ResourceContext rcontext, XhtmlNode ul, ConceptSetComponent inc, String type, List<String> langs) throws FHIRException {
    boolean hasExtensions = false;
    XhtmlNode li;
    li = ul.li();
    CodeSystem e = context.fetchCodeSystem(inc.getSystem());
    if (inc.hasSystem()) {
        if (inc.getConcept().size() == 0 && inc.getFilter().size() == 0) {
            li.addText(type + " all codes defined in ");
            addCsRef(inc, li, e);
        } else {
            if (inc.getConcept().size() > 0) {
                li.addText(type + " these codes as defined in ");
                addCsRef(inc, li, e);
                XhtmlNode t = li.table("none");
                boolean hasComments = false;
                boolean hasDefinition = false;
                for (ConceptReferenceComponent c : inc.getConcept()) {
                    hasComments = hasComments || ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_VS_COMMENT);
                    hasDefinition = hasDefinition || ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_DEFINITION);
                }
                if (hasComments || hasDefinition)
                    hasExtensions = true;
                addTableHeaderRowStandard(t, false, true, hasDefinition, hasComments, false);
                for (ConceptReferenceComponent c : inc.getConcept()) {
                    XhtmlNode tr = t.tr();
                    XhtmlNode td = tr.td();
                    ConceptDefinitionComponent cc = getConceptForCode(e, c.getCode(), inc);
                    addCodeToTable(false, inc.getSystem(), c.getCode(), c.hasDisplay() ? c.getDisplay() : cc != null ? cc.getDisplay() : "", td);
                    td = tr.td();
                    if (!Utilities.noString(c.getDisplay()))
                        td.addText(c.getDisplay());
                    else if (cc != null && !Utilities.noString(cc.getDisplay()))
                        td.addText(cc.getDisplay());
                    td = tr.td();
                    if (ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_DEFINITION))
                        smartAddText(td, ToolingExtensions.readStringExtension(c, ToolingExtensions.EXT_DEFINITION));
                    else if (cc != null && !Utilities.noString(cc.getDefinition()))
                        smartAddText(td, cc.getDefinition());
                    if (ExtensionHelper.hasExtension(c, ToolingExtensions.EXT_VS_COMMENT)) {
                        smartAddText(tr.td(), "Note: " + ToolingExtensions.readStringExtension(c, ToolingExtensions.EXT_VS_COMMENT));
                    }
                    for (ConceptReferenceDesignationComponent cd : c.getDesignation()) {
                        if (cd.hasLanguage() && !langs.contains(cd.getLanguage()))
                            langs.add(cd.getLanguage());
                    }
                }
            }
            boolean first = true;
            for (ConceptSetFilterComponent f : inc.getFilter()) {
                if (first) {
                    li.addText(type + " codes from ");
                    first = false;
                } else
                    li.tx(" and ");
                addCsRef(inc, li, e);
                li.tx(" where " + f.getProperty() + " " + describe(f.getOp()) + " ");
                if (e != null && codeExistsInValueSet(e, f.getValue())) {
                    String href = prefix + getCsRef(e);
                    if (href.contains("#"))
                        href = href + "-" + Utilities.nmtokenize(f.getValue());
                    else
                        href = href + "#" + e.getId() + "-" + Utilities.nmtokenize(f.getValue());
                    li.ah(href).addText(f.getValue());
                } else if ("concept".equals(f.getProperty()) && inc.hasSystem()) {
                    li.addText(f.getValue());
                    ValidationResult vr = context.validateCode(inc.getSystem(), f.getValue(), null);
                    if (vr.isOk()) {
                        li.tx(" (" + vr.getDisplay() + ")");
                    }
                } else
                    li.addText(f.getValue());
                String disp = ToolingExtensions.getDisplayHint(f);
                if (disp != null)
                    li.tx(" (" + disp + ")");
            }
        }
        if (inc.hasValueSet()) {
            li.tx(", where the codes are contained in ");
            boolean first = true;
            for (UriType vs : inc.getValueSet()) {
                if (first)
                    first = false;
                else
                    li.tx(", ");
                AddVsRef(rcontext, vs.asStringValue(), li);
            }
        }
    } else {
        li = ul.li();
        li.tx("Import all the codes that are contained in ");
        boolean first = true;
        for (UriType vs : inc.getValueSet()) {
            if (first)
                first = false;
            else
                li.tx(", ");
            AddVsRef(rcontext, vs.asStringValue(), li);
        }
    }
    return hasExtensions;
}

Example 22 with CD

use of org.hl7.v3.CD in project org.hl7.fhir.core by hapifhir.

the class ValueSetCheckerSimple method validateCode.

public ValidationResult validateCode(CodeableConcept code) throws FHIRException {
    // first, we validate the codings themselves
    List<String> errors = new ArrayList<String>();
    List<String> warnings = new ArrayList<String>();
    if (options.getValueSetMode() != ValueSetMode.CHECK_MEMERSHIP_ONLY) {
        for (Coding c : code.getCoding()) {
            if (!c.hasSystem()) {
                warnings.add(context.formatMessage(I18nConstants.CODING_HAS_NO_SYSTEM__CANNOT_VALIDATE));
            }
            CodeSystem cs = resolveCodeSystem(c.getSystem());
            ValidationResult res = null;
            if (cs == null || cs.getContent() != CodeSystemContentMode.COMPLETE) {
                res = context.validateCode(options.noClient(), c, null);
            } else {
                res = validateCode(c, cs);
            }
            if (!res.isOk()) {
                errors.add(res.getMessage());
            } else if (res.getMessage() != null) {
                warnings.add(res.getMessage());
            }
        }
    }
    Coding foundCoding = null;
    if (valueset != null && options.getValueSetMode() != ValueSetMode.NO_MEMBERSHIP_CHECK) {
        Boolean result = false;
        for (Coding c : code.getCoding()) {
            Boolean ok = codeInValueSet(c.getSystem(), c.getCode(), warnings);
            if (ok == null && result == false) {
                result = null;
            } else if (ok) {
                result = true;
                foundCoding = c;
            }
        }
        if (result == null) {
            warnings.add(0, context.formatMessage(I18nConstants.UNABLE_TO_CHECK_IF_THE_PROVIDED_CODES_ARE_IN_THE_VALUE_SET_, valueset.getUrl()));
        } else if (!result) {
            errors.add(0, context.formatMessage(I18nConstants.NONE_OF_THE_PROVIDED_CODES_ARE_IN_THE_VALUE_SET_, valueset.getUrl()));
        }
    }
    if (errors.size() > 0) {
        return new ValidationResult(IssueSeverity.ERROR, errors.toString());
    } else if (warnings.size() > 0) {
        return new ValidationResult(IssueSeverity.WARNING, warnings.toString());
    } else {
        ConceptDefinitionComponent cd = new ConceptDefinitionComponent(foundCoding.getCode());
        cd.setDisplay(foundCoding.getDisplay());
        return new ValidationResult(foundCoding.getSystem(), cd);
    }
}

Example 23 with CD

use of org.hl7.v3.CD in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method addLanguageRow.

private void addLanguageRow(ConceptReferenceComponent c, XhtmlNode t, List<String> langs) {
    XhtmlNode tr = t.tr();
    tr.td().addText(c.getCode());
    for (String lang : langs) {
        String d = null;
        for (ConceptReferenceDesignationComponent cd : c.getDesignation()) {
            String l = cd.getLanguage();
            if (lang.equals(l))
                d = cd.getValue();
        }
        tr.td().addText(d == null ? "" : d);
    }
}

Example 24 with CD

use of org.hl7.v3.CD in project org.hl7.fhir.core by hapifhir.

the class CapabilityStatementComparer method intersectCodeableConcepts.

private void intersectCodeableConcepts(List<CodeableConcept> tgt, List<CodeableConcept> src) {
    List<CodeableConcept> toRemove = new ArrayList<CodeableConcept>();
    for (CodeableConcept cd : src) {
        boolean remove = false;
        for (CodeableConcept t : tgt) {
            if (t.matches(cd)) {
                remove = true;
            }
        }
        if (remove) {
            toRemove.add(cd);
        }
    }
    tgt.removeAll(toRemove);
}

Example 25 with CD

use of org.hl7.v3.CD in project org.hl7.fhir.core by hapifhir.

the class CodeSystemComparer method getProp.

public ConceptPropertyComponent getProp(ConceptDefinitionComponent cd, PropertyComponent p, boolean right, CodeSystemComparison comp) {
    String c = p.getCode();
    if (right) {
        c = comp.getPropMap().get(c);
    }
    ConceptPropertyComponent cp = null;
    if (cd != null) {
        for (ConceptPropertyComponent t : cd.getProperty()) {
            if (t.getCode().equals(c)) {
                cp = t;
            }
        }
    }
    return cp;
}