Examples with CD org.hl7.v3.CD used on opensource projects

Example 41 with CD

use of org.hl7.v3.CD in project org.hl7.fhir.core by hapifhir.

the class OpenApiGenerator method generate.

public void generate(String license, String url) {
    dest.info().title(source.present()).description(source.getDescription()).license(license, url).version(source.getVersion());
    for (ContactDetail cd : source.getContact()) {
        dest.info().contact(cd.getName(), email(cd.getTelecom()), url(cd.getTelecom()));
    }
    if (source.hasPublisher())
        dest.info().contact(source.getPublisher(), null, null);
    if (source.hasImplementation()) {
        dest.server(source.getImplementation().getUrl()).description(source.getImplementation().getDescription());
    }
    dest.externalDocs().url(source.getUrl()).description("FHIR CapabilityStatement");
    for (CapabilityStatementRestComponent csr : source.getRest()) {
        if (csr.getMode() == RestfulCapabilityMode.SERVER) {
            generatePaths(csr);
        }
    }
    writeBaseParameters(dest.components());
}

Example 42 with CD

use of org.hl7.v3.CD in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method describeLang.

private String describeLang(String lang) {
    ValueSet v = context.fetchResource(ValueSet.class, "http://hl7.org/fhir/ValueSet/languages");
    if (v != null) {
        ConceptReferenceComponent l = null;
        for (ConceptReferenceComponent cc : v.getCompose().getIncludeFirstRep().getConcept()) {
            if (cc.getCode().equals(lang))
                l = cc;
        }
        if (l == null) {
            if (lang.contains("-"))
                lang = lang.substring(0, lang.indexOf("-"));
            for (ConceptReferenceComponent cc : v.getCompose().getIncludeFirstRep().getConcept()) {
                if (cc.getCode().equals(lang) || cc.getCode().startsWith(lang + "-"))
                    l = cc;
            }
        }
        if (l != null) {
            if (lang.contains("-"))
                lang = lang.substring(0, lang.indexOf("-"));
            String en = l.getDisplay();
            String nativelang = null;
            for (ConceptReferenceDesignationComponent cd : l.getDesignation()) {
                if (cd.getLanguage().equals(lang))
                    nativelang = cd.getValue();
            }
            if (nativelang == null)
                return en + " (" + lang + ")";
            else
                return nativelang + " (" + en + ", " + lang + ")";
        }
    }
    return lang;
}

Example 43 with CD

use of org.hl7.v3.CD in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method addDefineRowToTable.

private boolean addDefineRowToTable(XhtmlNode t, ConceptDefinitionComponent c, int i, boolean hasHierarchy, boolean hasDisplay, boolean comment, boolean version, boolean deprecated, List<UsedConceptMap> maps, String system, CodeSystem cs, String lang) throws FHIRFormatError, DefinitionException, IOException {
    boolean hasExtensions = false;
    XhtmlNode tr = t.tr();
    XhtmlNode td = tr.td();
    if (hasHierarchy) {
        td.addText(Integer.toString(i + 1));
        td = tr.td();
        String s = Utilities.padLeft("", '\u00A0', i * 2);
        td.addText(s);
    }
    td.attribute("style", "white-space:nowrap").addText(c.getCode());
    XhtmlNode a;
    if (c.hasCodeElement()) {
        td.an(cs.getId() + "-" + Utilities.nmtokenize(c.getCode()));
    }
    if (hasDisplay) {
        td = tr.td();
        if (c.hasDisplayElement()) {
            if (lang == null) {
                td.addText(c.getDisplay());
            } else if (lang.equals("*")) {
                boolean sl = false;
                for (ConceptDefinitionDesignationComponent cd : c.getDesignation()) if (cd.getUse().is("http://terminology.hl7.org/CodeSystem/designation-usage", "display") && cd.hasLanguage() && !c.getDisplay().equalsIgnoreCase(cd.getValue()))
                    sl = true;
                td.addText((sl ? cs.getLanguage("en") + ": " : "") + c.getDisplay());
                for (ConceptDefinitionDesignationComponent cd : c.getDesignation()) {
                    if (cd.getUse().is("http://terminology.hl7.org/CodeSystem/designation-usage", "display") && cd.hasLanguage() && !c.getDisplay().equalsIgnoreCase(cd.getValue())) {
                        td.br();
                        td.addText(cd.getLanguage() + ": " + cd.getValue());
                    }
                }
            } else if (lang.equals(cs.getLanguage()) || (lang.equals("en") && !cs.hasLanguage())) {
                td.addText(c.getDisplay());
            } else {
                for (ConceptDefinitionDesignationComponent cd : c.getDesignation()) {
                    if (cd.getUse().is("http://terminology.hl7.org/CodeSystem/designation-usage", "display") && cd.hasLanguage() && cd.getLanguage().equals(lang)) {
                        td.addText(cd.getValue());
                    }
                }
            }
        }
    }
    td = tr.td();
    if (c != null && c.hasDefinitionElement()) {
        if (lang == null) {
            if (hasMarkdownInDefinitions(cs))
                addMarkdown(td, c.getDefinition());
            else
                td.addText(c.getDefinition());
        } else if (lang.equals("*")) {
            boolean sl = false;
            for (ConceptDefinitionDesignationComponent cd : c.getDesignation()) if (cd.getUse().is("http://terminology.hl7.org/CodeSystem/designation-usage", "definition") && cd.hasLanguage() && !c.getDefinition().equalsIgnoreCase(cd.getValue()))
                sl = true;
            td.addText((sl ? cs.getLanguage("en") + ": " : "") + c.getDefinition());
            for (ConceptDefinitionDesignationComponent cd : c.getDesignation()) {
                if (cd.getUse().is("http://terminology.hl7.org/CodeSystem/designation-usage", "definition") && cd.hasLanguage() && !c.getDefinition().equalsIgnoreCase(cd.getValue())) {
                    td.br();
                    td.addText(cd.getLanguage() + ": " + cd.getValue());
                }
            }
        } else if (lang.equals(cs.getLanguage()) || (lang.equals("en") && !cs.hasLanguage())) {
            td.addText(c.getDefinition());
        } else {
            for (ConceptDefinitionDesignationComponent cd : c.getDesignation()) {
                if (cd.getUse().is("http://terminology.hl7.org/CodeSystem/designation-usage", "definition") && cd.hasLanguage() && cd.getLanguage().equals(lang)) {
                    td.addText(cd.getValue());
                }
            }
        }
    }
    if (deprecated) {
        td = tr.td();
        Boolean b = CodeSystemUtilities.isDeprecated(cs, c);
        if (b != null && b) {
            smartAddText(td, context.translator().translate("xhtml-gen-cs", "Deprecated", lang));
            hasExtensions = true;
            if (ToolingExtensions.hasExtension(c, ToolingExtensions.EXT_REPLACED_BY)) {
                Coding cc = (Coding) ToolingExtensions.getExtension(c, ToolingExtensions.EXT_REPLACED_BY).getValue();
                td.tx(" (replaced by ");
                String url = getCodingReference(cc, system);
                if (url != null) {
                    td.ah(url).addText(cc.getCode());
                    td.tx(": " + cc.getDisplay() + ")");
                } else
                    td.addText(cc.getCode() + " '" + cc.getDisplay() + "' in " + cc.getSystem() + ")");
            }
        }
    }
    if (comment) {
        td = tr.td();
        Extension ext = c.getExtensionByUrl(ToolingExtensions.EXT_CS_COMMENT);
        if (ext != null) {
            hasExtensions = true;
            String bc = ext.hasValue() ? ext.getValue().primitiveValue() : null;
            Map<String, String> translations = ToolingExtensions.getLanguageTranslations(ext.getValue());
            if (lang == null) {
                if (bc != null)
                    td.addText(bc);
            } else if (lang.equals("*")) {
                boolean sl = false;
                for (String l : translations.keySet()) if (bc == null || !bc.equalsIgnoreCase(translations.get(l)))
                    sl = true;
                if (bc != null) {
                    td.addText((sl ? cs.getLanguage("en") + ": " : "") + bc);
                }
                for (String l : translations.keySet()) {
                    if (bc == null || !bc.equalsIgnoreCase(translations.get(l))) {
                        if (!td.getChildNodes().isEmpty())
                            td.br();
                        td.addText(l + ": " + translations.get(l));
                    }
                }
            } else if (lang.equals(cs.getLanguage()) || (lang.equals("en") && !cs.hasLanguage())) {
                if (bc != null)
                    td.addText(bc);
            } else {
                if (bc != null)
                    translations.put(cs.getLanguage("en"), bc);
                for (String l : translations.keySet()) {
                    if (l.equals(lang)) {
                        td.addText(translations.get(l));
                    }
                }
            }
        }
    }
    if (version) {
        td = tr.td();
        if (c.hasUserData("cs.version.notes"))
            td.addText(c.getUserString("cs.version.notes"));
    }
    for (UsedConceptMap m : maps) {
        td = tr.td();
        List<TargetElementComponentWrapper> mappings = findMappingsForCode(c.getCode(), m.getMap());
        boolean first = true;
        for (TargetElementComponentWrapper mapping : mappings) {
            if (!first)
                td.br();
            first = false;
            XhtmlNode span = td.span(null, mapping.comp.hasEquivalence() ? mapping.comp.getEquivalence().toCode() : "");
            span.addText(getCharForEquivalence(mapping.comp));
            a = td.ah(prefix + m.getLink() + "#" + makeAnchor(mapping.group.getTarget(), mapping.comp.getCode()));
            a.addText(mapping.comp.getCode());
            if (!Utilities.noString(mapping.comp.getComment()))
                td.i().tx("(" + mapping.comp.getComment() + ")");
        }
    }
    for (String e : CodeSystemUtilities.getOtherChildren(cs, c)) {
        tr = t.tr();
        td = tr.td();
        String s = Utilities.padLeft("", '.', i * 2);
        td.addText(s);
        a = td.ah("#" + Utilities.nmtokenize(e));
        a.addText(c.getCode());
    }
    for (ConceptDefinitionComponent cc : c.getConcept()) {
        hasExtensions = addDefineRowToTable(t, cc, i + 1, hasHierarchy, hasDisplay, comment, version, deprecated, maps, system, cs, lang) || hasExtensions;
    }
    return hasExtensions;
}

Example 44 with CD

use of org.hl7.v3.CD in project org.hl7.fhir.core by hapifhir.

the class ProfileDrivenRenderer method renderLeaf.

private void renderLeaf(ResourceWrapper res, BaseWrapper ew, ElementDefinition defn, XhtmlNode parent, XhtmlNode x, boolean title, boolean showCodeDetails, Map<String, String> displayHints, String path, int indent) throws FHIRException, UnsupportedEncodingException, IOException, EOperationOutcome {
    if (ew == null)
        return;
    Base e = ew.getBase();
    if (e instanceof StringType)
        x.addText(((StringType) e).getValue());
    else if (e instanceof CodeType)
        x.addText(((CodeType) e).getValue());
    else if (e instanceof IdType)
        x.addText(((IdType) e).getValue());
    else if (e instanceof Extension)
        return;
    else if (e instanceof InstantType)
        x.addText(((InstantType) e).toHumanDisplay());
    else if (e instanceof DateTimeType) {
        renderDateTime(x, e);
    } else if (e instanceof Base64BinaryType)
        x.addText(new Base64().encodeAsString(((Base64BinaryType) e).getValue()));
    else if (e instanceof org.hl7.fhir.r5.model.DateType) {
        org.hl7.fhir.r5.model.DateType dt = ((org.hl7.fhir.r5.model.DateType) e);
        renderDate(x, dt);
    } else if (e instanceof Enumeration) {
        Object ev = ((Enumeration<?>) e).getValue();
        // todo: look up a display name if there is one
        x.addText(ev == null ? "" : ev.toString());
    } else if (e instanceof BooleanType) {
        x.addText(((BooleanType) e).getValue().toString());
    } else if (e instanceof CodeableConcept) {
        renderCodeableConcept(x, (CodeableConcept) e, showCodeDetails);
    } else if (e instanceof Coding) {
        renderCoding(x, (Coding) e, showCodeDetails);
    } else if (e instanceof CodeableReference) {
        renderCodeableReference(x, (CodeableReference) e, showCodeDetails);
    } else if (e instanceof Annotation) {
        renderAnnotation(x, (Annotation) e);
    } else if (e instanceof Identifier) {
        renderIdentifier(x, (Identifier) e);
    } else if (e instanceof org.hl7.fhir.r5.model.IntegerType) {
        if (((org.hl7.fhir.r5.model.IntegerType) e).hasValue()) {
            x.addText(Integer.toString(((org.hl7.fhir.r5.model.IntegerType) e).getValue()));
        } else {
            x.addText("??");
        }
    } else if (e instanceof org.hl7.fhir.r5.model.Integer64Type) {
        if (((org.hl7.fhir.r5.model.Integer64Type) e).hasValue()) {
            x.addText(Long.toString(((org.hl7.fhir.r5.model.Integer64Type) e).getValue()));
        } else {
            x.addText("??");
        }
    } else if (e instanceof org.hl7.fhir.r5.model.DecimalType) {
        x.addText(((org.hl7.fhir.r5.model.DecimalType) e).getValue().toString());
    } else if (e instanceof HumanName) {
        renderHumanName(x, (HumanName) e);
    } else if (e instanceof SampledData) {
        renderSampledData(x, (SampledData) e);
    } else if (e instanceof Address) {
        renderAddress(x, (Address) e);
    } else if (e instanceof ContactPoint) {
        renderContactPoint(x, (ContactPoint) e);
    } else if (e instanceof Expression) {
        renderExpression(x, (Expression) e);
    } else if (e instanceof Money) {
        renderMoney(x, (Money) e);
    } else if (e instanceof ContactDetail) {
        ContactDetail cd = (ContactDetail) e;
        if (cd.hasName()) {
            x.tx(cd.getName() + ": ");
        }
        boolean first = true;
        for (ContactPoint c : cd.getTelecom()) {
            if (first)
                first = false;
            else
                x.tx(",");
            renderContactPoint(x, c);
        }
    } else if (e instanceof UriType) {
        renderUri(x, (UriType) e, defn.getPath(), rcontext != null && rcontext.getResourceResource() != null ? rcontext.getResourceResource().getId() : null);
    } else if (e instanceof Timing) {
        renderTiming(x, (Timing) e);
    } else if (e instanceof Range) {
        renderRange(x, (Range) e);
    } else if (e instanceof Quantity) {
        renderQuantity(x, (Quantity) e, showCodeDetails);
    } else if (e instanceof Ratio) {
        renderQuantity(x, ((Ratio) e).getNumerator(), showCodeDetails);
        x.tx("/");
        renderQuantity(x, ((Ratio) e).getDenominator(), showCodeDetails);
    } else if (e instanceof Period) {
        Period p = (Period) e;
        renderPeriod(x, p);
    } else if (e instanceof Reference) {
        Reference r = (Reference) e;
        if (r.getReference() != null && r.getReference().contains("#")) {
            if (containedIds.contains(r.getReference().substring(1))) {
                x.ah(r.getReference()).tx("See " + r.getReference());
            } else {
                // in this case, we render the resource in line
                ResourceWrapper rw = null;
                for (ResourceWrapper t : res.getContained()) {
                    if (r.getReference().substring(1).equals(t.getId())) {
                        rw = t;
                    }
                }
                if (rw == null) {
                    renderReference(res, x, r);
                } else {
                    x.an(rw.getId());
                    ResourceRenderer rr = RendererFactory.factory(rw, context.copy().setAddGeneratedNarrativeHeader(false));
                    rr.render(parent.blockquote(), rw);
                }
            }
        } else {
            renderReference(res, x, r);
        }
    } else if (e instanceof Resource) {
        return;
    } else if (e instanceof DataRequirement) {
        DataRequirement p = (DataRequirement) e;
        renderDataRequirement(x, p);
    } else if (e instanceof PrimitiveType) {
        x.tx(((PrimitiveType) e).primitiveValue());
    } else if (e instanceof ElementDefinition) {
        x.tx("todo-bundle");
    } else if (e != null && !(e instanceof Attachment) && !(e instanceof Narrative) && !(e instanceof Meta)) {
        throw new NotImplementedException("type " + e.getClass().getName() + " not handled - should not be here");
    }
}

Example 45 with CD

use of org.hl7.v3.CD in project eCRNow by drajer-health.

the class CdaFhirUtilities method getCodingXmlForMappedConceptDomain.

public static String getCodingXmlForMappedConceptDomain(String conceptDomain, List<Coding> codes, String cdName, Boolean includeNullFlavor) {
    StringBuilder sb = new StringBuilder();
    if (codes != null && !codes.isEmpty()) {
        Boolean first = true;
        Boolean cdStarted = false;
        for (Coding c : codes) {
            if (first || !cdStarted) {
                first = false;
                Pair<String, String> csd = CdaGeneratorConstants.getCodeSystemFromUrl(c.getSystem());
                String mappedCd = CdaGeneratorConstants.getMappedCodeFromFhirToCda(conceptDomain, c.getCode());
                if (!csd.getValue0().isEmpty() && !csd.getValue1().isEmpty() && mappedCd != null && !mappedCd.isEmpty()) {
                    cdStarted = true;
                    sb.append(CdaGeneratorUtils.getXmlForCDWithoutEndTag(cdName, mappedCd, csd.getValue0(), csd.getValue1(), c.getDisplay()));
                }
            } else if (cdStarted) {
                Pair<String, String> csd = CdaGeneratorConstants.getCodeSystemFromUrl(c.getSystem());
                String mappedCode = CdaGeneratorConstants.getMappedCodeFromFhirToCda(conceptDomain, c.getCode());
                if (!csd.getValue1().isEmpty() && !csd.getValue0().isEmpty() && mappedCode != null && !mappedCode.isEmpty())
                    sb.append(CdaGeneratorUtils.getXmlForCD(CdaGeneratorConstants.TRANSLATION_EL_NAME, mappedCode, csd.getValue0(), csd.getValue1(), c.getDisplay()));
            }
        }
        // At cd started...close the tag
        if (cdStarted)
            sb.append(CdaGeneratorUtils.getXmlForEndElement(cdName));
    } else if (includeNullFlavor) {
        sb.append(CdaGeneratorUtils.getXmlForNullCD(cdName, CdaGeneratorConstants.NF_NI));
    }
    return sb.toString();
}