Examples with FolderDetails org.jbei.ice.lib.dto.folder.FolderDetails used on opensource projects

Example 26 with FolderDetails

use of org.jbei.ice.lib.dto.folder.FolderDetails in project ice by JBEI.

the class FolderController method getPublicFolders.

/**
     * Retrieves folders that are shared shared publicly. Note that this is different from
     * featured folders that have a type of PUBLIC
     *
     * @return list of public folders on this site
     */
public ArrayList<FolderDetails> getPublicFolders() {
    Group publicGroup = groupController.createOrRetrievePublicGroup();
    List<Folder> folders = permissionDAO.getFolders(publicGroup);
    ArrayList<FolderDetails> list = new ArrayList<>();
    for (Folder folder : folders) {
        FolderDetails details = folder.toDataTransferObject();
        long folderSize = dao.getFolderSize(folder.getId(), null, true);
        details.setCount(folderSize);
        list.add(details);
    }
    Collections.sort(list);
    return list;
}

Example 27 with FolderDetails

use of org.jbei.ice.lib.dto.folder.FolderDetails in project ice by JBEI.

the class FolderContents method addRemoteEntries.

/**
     * @param remoteEntries list of entries that map to entries on other ICE instances. It contains enough information
     *                      for the table view (as a cache)
     * @param folders       list of folders that the remote entries are to be added to
     * @return List of folders that the specified entries were added to
     */
protected List<FolderDetails> addRemoteEntries(String userId, List<PartData> remoteEntries, List<FolderDetails> folders) {
    // nothing adding to destination
    if (remoteEntries == null)
        return new ArrayList<>();
    // nothing to add
    if (remoteEntries.isEmpty())
        return folders;
    EntryDAO entryDAO = DAOFactory.getEntryDAO();
    List<Entry> entryModelList = new ArrayList<>(remoteEntries.size());
    for (PartData partData : remoteEntries) {
        Entry entry = entryDAO.getByRecordId(partData.getRecordId());
        if (entry == null) {
            switch(partData.getType()) {
                case PART:
                default:
                    entry = new Part();
                    break;
                case STRAIN:
                    entry = new Strain();
                    break;
                case PLASMID:
                    entry = new Plasmid();
                    break;
                case ARABIDOPSIS:
                    entry = new ArabidopsisSeed();
                    break;
            }
            entry.setRecordId(partData.getRecordId());
            entry.setVersionId(partData.getRecordId());
            entry.setRecordType(partData.getType().getDisplay());
            entry.setName(partData.getName());
            entry.setShortDescription(partData.getShortDescription());
            entry.setStatus(partData.getStatus());
            entry.setVisibility(Visibility.REMOTE.getValue());
            entry.setPartNumber(partData.getPartId());
            String sequence = partData.isHasSequence() ? "sequence" : "text";
            entry.setLongDescriptionType(sequence);
            entry.setBioSafetyLevel(partData.getBioSafetyLevel());
            entry.setCreationTime(new Date(partData.getCreationTime()));
            entry = entryDAO.create(entry);
        }
        entryModelList.add(entry);
    }
    for (FolderDetails details : folders) {
        Folder folder = folderDAO.get(details.getId());
        if (folder == null) {
            Logger.warn("Could not add entries to folder " + details.getId() + " which doesn't exist");
            continue;
        }
        if (!folderAuthorization.canWrite(userId, folder)) {
            Logger.warn(userId + " lacks write privileges on folder " + folder.getId());
            continue;
        }
        folderDAO.addFolderContents(folder, entryModelList);
        details.setCount(folderDAO.getFolderSize(folder.getId(), null, true));
    }
    return folders;
}

Example 28 with FolderDetails

use of org.jbei.ice.lib.dto.folder.FolderDetails in project ice by JBEI.

the class FolderController method getBulkUploadDrafts.

public ArrayList<FolderDetails> getBulkUploadDrafts(String userId) {
    ArrayList<FolderDetails> folders = new ArrayList<>();
    ArrayList<BulkUploadInfo> list = bulkUploadController.retrieveByUser(userId, userId);
    for (BulkUploadInfo info : list) {
        FolderDetails details = new FolderDetails();
        details.setName(info.getName());
        details.setCount(info.getCount());
        details.setId(info.getId());
        details.setCanEdit(true);
        details.setType(FolderType.UPLOAD);
        folders.add(details);
    }
    return folders;
}

Example 29 with FolderDetails

use of org.jbei.ice.lib.dto.folder.FolderDetails in project ice by JBEI.

the class FolderController method getAvailableFolders.

/**
     * Retrieves folders that have been "promoted" by an administrator to
     * imply that they are to be made available to everyone on the site
     *
     * @param userId unique user identifier
     * @return list of folders that are contained under the "Available" section
     */
public ArrayList<FolderDetails> getAvailableFolders(String userId) {
    Set<Folder> folders = new HashSet<>();
    folders.addAll(dao.getFoldersByType(FolderType.PUBLIC));
    boolean isAdmin = accountController.isAdministrator(userId);
    ArrayList<FolderDetails> list = new ArrayList<>();
    for (Folder folder : folders) {
        FolderDetails details = folder.toDataTransferObject();
        long folderSize = dao.getFolderSize(folder.getId(), null, true);
        details.setCount(folderSize);
        details.setType(FolderType.PUBLIC);
        details.setCanEdit(isAdmin);
        list.add(details);
    }
    Collections.sort(list);
    return list;
}

Example 30 with FolderDetails

use of org.jbei.ice.lib.dto.folder.FolderDetails in project ice by JBEI.

the class RemoteTransfer method transferFolder.

public FolderDetails transferFolder(long remoteId, FolderDetails folderDetails, List<Long> remoteIds) {
    RemotePartner partner = this.remotePartnerDAO.get(remoteId);
    if (partner == null)
        throw new IllegalArgumentException("Invalid remote host id: " + remoteId);
    FolderDetails details = remoteContact.transferFolder(partner.getUrl(), folderDetails);
    if (folderDetails == null) {
        Logger.error("Could not create remote folder");
        return null;
    }
    if (remoteIds == null || remoteIds.isEmpty()) {
        Logger.info("Skipping transfer of entries. List is empty");
        return details;
    }
    // move entries to the transferred entries
    EntrySelection entrySelection = new EntrySelection();
    entrySelection.getEntries().addAll(remoteIds);
    entrySelection.getDestination().add(details);
    entrySelection.setSelectionType(EntrySelectionType.FOLDER);
    remoteContact.addTransferredEntriesToFolder(partner.getUrl(), entrySelection);
    return details;
}