Examples with RegistryPartner org.jbei.ice.lib.dto.web.RegistryPartner used on opensource projects

Example 21 with RegistryPartner

use of org.jbei.ice.lib.dto.web.RegistryPartner in project ice by JBEI.

the class RemoteClientModel method toDataTransferObject.

@Override
public RemoteUser toDataTransferObject() {
    RemoteUser remoteUser = new RemoteUser();
    RegistryPartner partner = new RegistryPartner();
    partner.setId(remotePartner.getId());
    partner.setUrl(remotePartner.getUrl());
    partner.setName(remotePartner.getName());
    remoteUser.setPartner(partner);
    AccountTransfer accountTransfer = new AccountTransfer();
    accountTransfer.setEmail(email);
    remoteUser.setUser(accountTransfer);
    return remoteUser;
}

Example 22 with RegistryPartner

use of org.jbei.ice.lib.dto.web.RegistryPartner in project ice by JBEI.

the class WoRController method getRegistryPartners.

public WebOfRegistries getRegistryPartners(boolean approvedOnly) {
    WebOfRegistries webOfRegistries = new WebOfRegistries();
    webOfRegistries.setWebEnabled(isWebEnabled());
    // retrieve actual partners
    List<RemotePartner> partners = dao.getRegistryPartners();
    ArrayList<RegistryPartner> registryPartners = new ArrayList<>();
    for (RemotePartner partner : partners) {
        if (approvedOnly && partner.getPartnerStatus() != RemotePartnerStatus.APPROVED)
            continue;
        registryPartners.add(partner.toDataTransferObject());
    }
    webOfRegistries.setPartners(registryPartners);
    return webOfRegistries;
}

Example 23 with RegistryPartner

use of org.jbei.ice.lib.dto.web.RegistryPartner in project ice by JBEI.

the class PartResource method read.

/**
     * Retrieves a part using any of the unique identifiers. e.g. Part number, synthetic id, or
     * global unique identifier.
     */
@GET
@Produces(MediaType.APPLICATION_JSON)
@Path("/{id}")
public Response read(@PathParam("id") final String id, @DefaultValue("false") @QueryParam("remote") boolean isRemote, // todo : move to header
@QueryParam("token") String remoteUserToken, @QueryParam("userId") String remoteUserId, @QueryParam("folderId") long fid) {
    String userId = getUserId();
    if (isRemote) {
        log(userId, "get remote entry");
        long partId = Long.decode(id);
        PartData data = remoteEntries.getEntryDetails(userId, fid, partId);
        return super.respond(data);
    } else {
        try {
            if (StringUtils.isEmpty(userId)) {
                RegistryPartner partner = requireWebPartner();
                log(partner.getUrl(), "retrieving details for " + id);
                return super.respond(controller.getRequestedEntry(remoteUserId, remoteUserToken, id, fid, partner));
            } else {
                log(userId, "retrieving details for " + id);
                return super.respond(controller.retrieveEntryDetails(userId, id));
            }
        } catch (final PermissionException pe) {
            throw new WebApplicationException(Response.Status.FORBIDDEN);
        }
    }
}

Example 24 with RegistryPartner

use of org.jbei.ice.lib.dto.web.RegistryPartner in project ice by JBEI.

the class PartResource method getSequence.

@GET
@Produces(MediaType.APPLICATION_JSON)
@Path("/{id}/sequence")
public Response getSequence(@PathParam("id") final String partId, @DefaultValue("false") @QueryParam("remote") boolean isRemote, @QueryParam("token") String remoteUserToken, @QueryParam("userId") String remoteUserId, @QueryParam("folderId") long fid) {
    final FeaturedDNASequence sequence;
    final String userId = getUserId();
    try {
        if (isRemote) {
            // entry exists remotely
            sequence = remoteEntries.getSequence(userId, fid, partId);
        } else {
            // what request is being responded to (local or remote)
            if (StringUtils.isEmpty(userId)) {
                RegistryPartner partner = requireWebPartner();
                if (StringUtils.isEmpty(remoteUserToken) || fid == 0) {
                    sequence = sequenceController.retrievePartSequence(userId, partId);
                } else {
                    sequence = sequenceController.getRequestedSequence(partner, remoteUserId, remoteUserToken, partId, fid);
                }
            } else {
                // user id can be null if partId is public
                sequence = sequenceController.retrievePartSequence(userId, partId);
            }
        }
        return Response.status(Response.Status.OK).entity(sequence).build();
    } catch (PermissionException pe) {
        throw new WebApplicationException(Response.Status.FORBIDDEN);
    }
}

Example 25 with RegistryPartner

use of org.jbei.ice.lib.dto.web.RegistryPartner in project ice by JBEI.

the class PartnerResource method updateRemotePartnerAPIKey.

/**
     * Request from a remote ICE instance to update it's api key
     * Verification uses the existing API key. Similar to updating password
     * by sending the old password
     *
     * @param partner remote partner information (including new api key)
     * @return information about this instance with the new token remote partner
     */
@PUT
public Response updateRemotePartnerAPIKey(RegistryPartner partner) {
    RegistryPartner registryPartner = requireWebPartner();
    WebPartners partners = new WebPartners();
    return super.respond(partners.updateRemoteAPIKey(registryPartner.getUrl(), partner));
}