Examples with RegistryPartner org.jbei.ice.lib.dto.web.RegistryPartner used on opensource projects

Example 26 with RegistryPartner

use of org.jbei.ice.lib.dto.web.RegistryPartner in project ice by JBEI.

the class RemotePartner method toDataTransferObject.

@Override
public RegistryPartner toDataTransferObject() {
    RegistryPartner registryPartner = new RegistryPartner();
    registryPartner.setId(this.id);
    registryPartner.setName(this.name);
    if (this.added != null)
        registryPartner.setAddTime(this.added.getTime());
    if (this.lastContact != null)
        registryPartner.setLastContactTime(this.lastContact.getTime());
    registryPartner.setUrl(this.url);
    registryPartner.setStatus(this.partnerStatus);
    registryPartner.setSent(getSent());
    registryPartner.setFetched(fetched);
    //        registryPartner.setApiKey(apiKey);
    return registryPartner;
}

Example 27 with RegistryPartner

use of org.jbei.ice.lib.dto.web.RegistryPartner in project ice by JBEI.

the class WebPartners method addNewPartner.

/**
     * Adds the registry instance specified by the url to the list of existing partners (if not already in there)
     * and sends a request to the remote instance that includes a security token that the remote instance
     * can use to communicate with this instance.
     * <p>
     * Information about the remote instance is still saved even when it cannot be communicated with. This
     * allows a future communication attempt.
     *
     * @param userId  id of user performing action (must have admin privileges)
     * @param partner registry partner object that contains unique uniform resource identifier & name for the registry
     * @return add partner ofr
     */
public RegistryPartner addNewPartner(String userId, RegistryPartner partner) {
    if (!isInWebOfRegistries())
        return null;
    // check for admin privileges before granting request
    if (!accountController.isAdministrator(userId))
        throw new PermissionException("Non admin attempting to add remote partner");
    if (StringUtils.isEmpty(partner.getUrl()))
        throw new IllegalArgumentException("Cannot add partner without valid url");
    // check if there is a partner with that url
    RemotePartner remotePartner = dao.getByUrl(partner.getUrl());
    if (remotePartner != null) {
        // if so just update the api key
        return updateAPIKey(userId, remotePartner.getId());
    }
    Logger.info(userId + ": adding WoR partner [" + partner.getUrl() + "]");
    // create information about this instance to send to potential partner
    // including a random token for use when contacting this instance
    RegistryPartner thisPartner = getThisInstanceWithNewApiKey();
    if (thisPartner == null) {
        // will not contact
        Logger.error("Cannot exchange api token with remote host due to invalid local url");
        partner.setStatus(RemotePartnerStatus.NOT_CONTACTED);
    } else {
        RegistryPartner newPartner = remoteContact.contactPotentialPartner(thisPartner, partner.getUrl());
        if (newPartner == null) {
            // contact failed
            Logger.error("Remote contact of partner " + partner.getUrl() + " failed");
            partner.setStatus(RemotePartnerStatus.CONTACT_FAILED);
        } else {
            // contact succeeded with return of api key
            partner.setStatus(RemotePartnerStatus.APPROVED);
            partner.setApiKey(newPartner.getApiKey());
        }
    }
    // if status is not approved, then the token is irrelevant since it is not stored and was not
    // successfully transmitted
    String apiKey = thisPartner != null ? thisPartner.getApiKey() : null;
    return createRemotePartnerObject(partner, apiKey);
}

Example 28 with RegistryPartner

use of org.jbei.ice.lib.dto.web.RegistryPartner in project ice by JBEI.

the class WebPartners method getPartners.

/**
     * Retrieves list of partners for this instance
     *
     * @return list of partners available for this ICE instance or an empty list if this instance is not in web of
     * registries
     */
public List<RegistryPartner> getPartners() {
    if (!isInWebOfRegistries())
        return new ArrayList<>();
    List<RemotePartner> partners = dao.getRegistryPartners();
    List<RegistryPartner> registryPartners = new ArrayList<>();
    if (partners == null)
        return registryPartners;
    for (RemotePartner remotePartner : partners) {
        registryPartners.add(remotePartner.toDataTransferObject());
    }
    return registryPartners;
}

Example 29 with RegistryPartner

use of org.jbei.ice.lib.dto.web.RegistryPartner in project ice by JBEI.

the class FolderResource method read.

/**
     * Retrieves the entries for specified folder. Handles request
     * from a local client (ui) or from a remote ice instance
     *
     * @return list of retrieved entries wrapped in folder object
     */
@GET
@Produces(MediaType.APPLICATION_JSON)
@Path("/{id}/entries")
public FolderDetails read(@PathParam("id") final String folderId, @DefaultValue("0") @QueryParam("offset") final int offset, @DefaultValue("15") @QueryParam("limit") final int limit, @DefaultValue("created") @QueryParam("sort") final String sort, @DefaultValue("false") @QueryParam("asc") final boolean asc, @DefaultValue("") @QueryParam("filter") String filter, // todo: move to headers
@QueryParam("token") String token, // todo : ditto
@QueryParam("userId") String remoteUserId, @QueryParam("fields") List<String> queryParam) {
    try {
        final ColumnField field = ColumnField.valueOf(sort.toUpperCase());
        if (folderId.equalsIgnoreCase("public")) {
            // todo : move to separate rest resource path
            RegistryPartner registryPartner = requireWebPartner();
            // return public entries
            log(registryPartner.getUrl(), "requesting public entries");
            return this.controller.getPublicEntries(field, offset, limit, asc);
        }
        // userId can be empty for public folders
        String userId = super.getUserId();
        try {
            final long id = Long.decode(folderId);
            String message = "retrieving folder " + id + " entries";
            if (filter.length() > 0)
                message += " filtered by \"" + filter + "\"";
            FolderContents folderContents = new FolderContents();
            PageParameters pageParameters = new PageParameters(offset, limit, field, asc, filter);
            if (StringUtils.isEmpty(userId)) {
                if (// todo :verify partner?
                StringUtils.isEmpty(token))
                    return folderContents.getContents(userId, id, pageParameters);
                // get registry partner
                RegistryPartner partner = requireWebPartner();
                log(partner.getUrl(), message);
                return folderContents.getRemotelySharedContents(remoteUserId, token, partner, id, pageParameters);
            } else {
                log(userId, message);
                return folderContents.getContents(userId, id, pageParameters);
            }
        } catch (final NumberFormatException nfe) {
            Logger.error("Passed folder id " + folderId + " is not a number");
            return null;
        }
    } catch (PermissionException e) {
        throw new WebApplicationException(Response.Status.UNAUTHORIZED);
    }
}

Example 30 with RegistryPartner

use of org.jbei.ice.lib.dto.web.RegistryPartner in project ice by JBEI.

the class AccessTokenResource method getWebPartner.

/**
     * Validates web of registries access token (api key)
     */
@GET
@Path("/web")
public Response getWebPartner(@QueryParam("url") String url) {
    WebPartners partners = new WebPartners();
    RegistryPartner partner = partners.get(worPartnerToken, url);
    return super.respond(partner);
}