Examples with Folder org.jbei.ice.storage.model.Folder used on opensource projects

Example 26 with Folder

use of org.jbei.ice.storage.model.Folder in project ice by JBEI.

the class FolderController method getAvailableFolders.

/**
     * Retrieves folders that have been "promoted" by an administrator to
     * imply that they are to be made available to everyone on the site
     *
     * @param userId unique user identifier
     * @return list of folders that are contained under the "Available" section
     */
public ArrayList<FolderDetails> getAvailableFolders(String userId) {
    Set<Folder> folders = new HashSet<>();
    folders.addAll(dao.getFoldersByType(FolderType.PUBLIC));
    boolean isAdmin = accountController.isAdministrator(userId);
    ArrayList<FolderDetails> list = new ArrayList<>();
    for (Folder folder : folders) {
        FolderDetails details = folder.toDataTransferObject();
        long folderSize = dao.getFolderSize(folder.getId(), null, true);
        details.setCount(folderSize);
        details.setType(FolderType.PUBLIC);
        details.setCanEdit(isAdmin);
        list.add(details);
    }
    Collections.sort(list);
    return list;
}

Example 27 with Folder

use of org.jbei.ice.storage.model.Folder in project ice by JBEI.

the class RemoteEntries method retrieveRemoteToolTip.

// contact the remote partner to get the tool tip
public PartData retrieveRemoteToolTip(String userId, long folderId, long partId) {
    Account account = DAOFactory.getAccountDAO().getByEmail(userId);
    Folder folder = DAOFactory.getFolderDAO().get(folderId);
    RemoteAccessModel remoteAccessModel = DAOFactory.getRemoteAccessModelDAO().getByFolder(account, folder);
    if (remoteAccessModel == null) {
        Logger.error("Could not retrieve remote access for folder " + folder.getId());
        return null;
    }
    RemotePartner remotePartner = remoteAccessModel.getRemoteClientModel().getRemotePartner();
    String url = remotePartner.getUrl();
    String token = remoteAccessModel.getToken();
    return remoteContact.getToolTipDetails(url, userId, partId, token, remotePartner.getApiKey());
}

Example 28 with Folder

use of org.jbei.ice.storage.model.Folder in project ice by JBEI.

the class RemoteEntries method getEntryDetails.

public PartData getEntryDetails(String userId, long folderId, long partId) {
    Account account = DAOFactory.getAccountDAO().getByEmail(userId);
    Folder folder = DAOFactory.getFolderDAO().get(folderId);
    RemoteAccessModel remoteAccessModel = DAOFactory.getRemoteAccessModelDAO().getByFolder(account, folder);
    if (remoteAccessModel == null) {
        Logger.error("Could not retrieve remote access for folder " + folder.getId());
        return null;
    }
    RemotePartner remotePartner = remoteAccessModel.getRemoteClientModel().getRemotePartner();
    String url = remotePartner.getUrl();
    String token = remoteAccessModel.getToken();
    long remoteFolderId = Long.decode(remoteAccessModel.getIdentifier());
    return remoteContact.getRemoteEntry(url, userId, partId, remoteFolderId, token, remotePartner.getApiKey());
}

Example 29 with Folder

use of org.jbei.ice.storage.model.Folder in project ice by JBEI.

the class RemoteEntries method getSequence.

public FeaturedDNASequence getSequence(String userId, long folderId, String entryId) {
    Account account = DAOFactory.getAccountDAO().getByEmail(userId);
    Folder folder = DAOFactory.getFolderDAO().get(folderId);
    RemoteAccessModel remoteAccessModel = DAOFactory.getRemoteAccessModelDAO().getByFolder(account, folder);
    if (remoteAccessModel == null) {
        Logger.error("Could not retrieve remote access for folder " + folder.getId());
        return null;
    }
    RemotePartner remotePartner = remoteAccessModel.getRemoteClientModel().getRemotePartner();
    String token = remoteAccessModel.getToken();
    long remoteFolderId = Long.decode(remoteAccessModel.getIdentifier());
    return remoteContact.getSequence(remotePartner.getUrl(), userId, entryId, remoteFolderId, token, remotePartner.getApiKey());
}

Example 30 with Folder

use of org.jbei.ice.storage.model.Folder in project ice by JBEI.

the class Entries method getFolderEntries.

// todo : folder controller
protected List<Long> getFolderEntries(long folderId, boolean all, EntryType type) {
    Folder folder = DAOFactory.getFolderDAO().get(folderId);
    FolderAuthorization folderAuthorization = new FolderAuthorization();
    folderAuthorization.expectRead(userId, folder);
    if (all)
        type = null;
    boolean visibleOnly = folder.getType() != FolderType.TRANSFERRED;
    return DAOFactory.getFolderDAO().getFolderContentIds(folderId, type, visibleOnly);
}