Examples with RemoteAccessModel org.jbei.ice.storage.model.RemoteAccessModel used on opensource projects

Example 1 with RemoteAccessModel

use of org.jbei.ice.storage.model.RemoteAccessModel in project ice by JBEI.

the class RemoteAccessModelDAO method getByFolder.

public RemoteAccessModel getByFolder(Account account, Folder folder) {
    try {
        CriteriaQuery<RemoteAccessModel> query = getBuilder().createQuery(RemoteAccessModel.class);
        Root<RemoteAccessModel> from = query.from(RemoteAccessModel.class);
        Join<RemoteAccessModel, Permission> permission = from.join("permission");
        query.where(getBuilder().equal(permission.get("folder"), folder), getBuilder().equal(permission.get("account"), account));
        return currentSession().createQuery(query).uniqueResult();
    } catch (Exception he) {
        Logger.error(he);
        throw new DAOException(he);
    }
}

Example 2 with RemoteAccessModel

use of org.jbei.ice.storage.model.RemoteAccessModel in project ice by JBEI.

the class RemoteAccessTest method testAdd.

@Test
public void testAdd() throws Exception {
    new ConfigurationSettings().setPropertyValue(ConfigurationKey.JOIN_WEB_OF_REGISTRIES, "true");
    // this tests the scenario where a WoR partner shares a remote resource (folder or entry) with a user
    // on another instance
    Account account = AccountCreator.createTestAccount("RemoteAccessTest.testAdd", false);
    RemoteAccess remoteAccess = new RemoteAccess();
    // create mock remote partner
    RemotePartner partner = new RemotePartner();
    partner.setUrl("remote-test.jbei.org");
    partner = DAOFactory.getRemotePartnerDAO().create(partner);
    // create permission to share with this user
    AccessPermission permission = new AccessPermission();
    AccountTransfer accountTransfer = new AccountTransfer();
    // person sharing
    accountTransfer.setEmail("I wanna share from far away");
    permission.setAccount(accountTransfer);
    permission.setDisplay("Folder Name");
    permission.setUserId(account.getEmail());
    permission.setType(AccessPermission.Type.READ_FOLDER);
    permission.setTypeId(Integer.MAX_VALUE);
    permission.setSecret("supersekrit");
    AccessPermission accessPermission = remoteAccess.add(partner.toDataTransferObject(), permission);
    Folder folder = DAOFactory.getFolderDAO().get(accessPermission.getTypeId());
    RemoteAccessModel model = DAOFactory.getRemoteAccessModelDAO().getByFolder(account, folder);
    Assert.assertNotNull(model);
    // shared folder should be in list of shared collection
    Collections collections = new Collections(account.getEmail());
    List<FolderDetails> subFolders = collections.getSubFolders(CollectionType.SHARED);
    boolean found = false;
    for (FolderDetails details : subFolders) {
        found = details.getName().equalsIgnoreCase(permission.getDisplay()) && Long.toString(permission.getTypeId()).equals(details.getDescription());
        if (found)
            break;
    }
    Assert.assertTrue(found);
}

Example 3 with RemoteAccessModel

use of org.jbei.ice.storage.model.RemoteAccessModel in project ice by JBEI.

the class RemoteEntries method getEntryDetails.

public PartData getEntryDetails(String userId, long folderId, long partId) {
    Account account = DAOFactory.getAccountDAO().getByEmail(userId);
    Folder folder = DAOFactory.getFolderDAO().get(folderId);
    RemoteAccessModel remoteAccessModel = DAOFactory.getRemoteAccessModelDAO().getByFolder(account, folder);
    if (remoteAccessModel == null) {
        Logger.error("Could not retrieve remote access for folder " + folder.getId());
        return null;
    }
    RemotePartner remotePartner = remoteAccessModel.getRemoteClientModel().getRemotePartner();
    String url = remotePartner.getUrl();
    String token = remoteAccessModel.getToken();
    long remoteFolderId = Long.decode(remoteAccessModel.getIdentifier());
    return remoteContact.getRemoteEntry(url, userId, partId, remoteFolderId, token, remotePartner.getApiKey());
}

Example 4 with RemoteAccessModel

use of org.jbei.ice.storage.model.RemoteAccessModel in project ice by JBEI.

the class RemoteEntries method retrieveRemoteToolTip.

// contact the remote partner to get the tool tip
public PartData retrieveRemoteToolTip(String userId, long folderId, long partId) {
    Account account = DAOFactory.getAccountDAO().getByEmail(userId);
    Folder folder = DAOFactory.getFolderDAO().get(folderId);
    RemoteAccessModel remoteAccessModel = DAOFactory.getRemoteAccessModelDAO().getByFolder(account, folder);
    if (remoteAccessModel == null) {
        Logger.error("Could not retrieve remote access for folder " + folder.getId());
        return null;
    }
    RemotePartner remotePartner = remoteAccessModel.getRemoteClientModel().getRemotePartner();
    String url = remotePartner.getUrl();
    String token = remoteAccessModel.getToken();
    return remoteContact.getToolTipDetails(url, userId, partId, token, remotePartner.getApiKey());
}

Example 5 with RemoteAccessModel

use of org.jbei.ice.storage.model.RemoteAccessModel in project ice by JBEI.

the class RemoteEntries method getSequence.

public FeaturedDNASequence getSequence(String userId, long folderId, String entryId) {
    Account account = DAOFactory.getAccountDAO().getByEmail(userId);
    Folder folder = DAOFactory.getFolderDAO().get(folderId);
    RemoteAccessModel remoteAccessModel = DAOFactory.getRemoteAccessModelDAO().getByFolder(account, folder);
    if (remoteAccessModel == null) {
        Logger.error("Could not retrieve remote access for folder " + folder.getId());
        return null;
    }
    RemotePartner remotePartner = remoteAccessModel.getRemoteClientModel().getRemotePartner();
    String token = remoteAccessModel.getToken();
    long remoteFolderId = Long.decode(remoteAccessModel.getIdentifier());
    return remoteContact.getSequence(remotePartner.getUrl(), userId, entryId, remoteFolderId, token, remotePartner.getApiKey());
}