Examples with RemotePartner org.jbei.ice.storage.model.RemotePartner used on opensource projects

Example 21 with RemotePartner

use of org.jbei.ice.storage.model.RemotePartner in project ice by JBEI.

the class WebEntries method getSequence.

public FeaturedDNASequence getSequence(String entryId) {
    String recordId;
    try {
        long id = Long.decode(entryId);
        Entry entry = this.entryDAO.get(id);
        if (entry == null)
            recordId = entryId;
        else
            recordId = entry.getRecordId();
    } catch (NumberFormatException ex) {
        recordId = entryId;
    }
    List<RemotePartner> partners = this.remotePartnerDAO.getRegistryPartners();
    for (RemotePartner partner : partners) {
        if (partner.getPartnerStatus() != RemotePartnerStatus.APPROVED)
            continue;
        FeaturedDNASequence sequence = this.remoteContact.getPublicEntrySequence(partner.getUrl(), recordId, partner.getApiKey());
        if (sequence != null)
            return sequence;
    }
    return null;
}

Example 22 with RemotePartner

use of org.jbei.ice.storage.model.RemotePartner in project ice by JBEI.

the class RemoteAccessTest method testAdd.

@Test
public void testAdd() throws Exception {
    new ConfigurationSettings().setPropertyValue(ConfigurationKey.JOIN_WEB_OF_REGISTRIES, "true");
    // this tests the scenario where a WoR partner shares a remote resource (folder or entry) with a user
    // on another instance
    Account account = AccountCreator.createTestAccount("RemoteAccessTest.testAdd", false);
    RemoteAccess remoteAccess = new RemoteAccess();
    // create mock remote partner
    RemotePartner partner = new RemotePartner();
    partner.setUrl("remote-test.jbei.org");
    partner = DAOFactory.getRemotePartnerDAO().create(partner);
    // create permission to share with this user
    AccessPermission permission = new AccessPermission();
    AccountTransfer accountTransfer = new AccountTransfer();
    // person sharing
    accountTransfer.setEmail("I wanna share from far away");
    permission.setAccount(accountTransfer);
    permission.setDisplay("Folder Name");
    permission.setUserId(account.getEmail());
    permission.setType(AccessPermission.Type.READ_FOLDER);
    permission.setTypeId(Integer.MAX_VALUE);
    permission.setSecret("supersekrit");
    AccessPermission accessPermission = remoteAccess.add(partner.toDataTransferObject(), permission);
    Folder folder = DAOFactory.getFolderDAO().get(accessPermission.getTypeId());
    RemoteAccessModel model = DAOFactory.getRemoteAccessModelDAO().getByFolder(account, folder);
    Assert.assertNotNull(model);
    // shared folder should be in list of shared collection
    Collections collections = new Collections(account.getEmail());
    List<FolderDetails> subFolders = collections.getSubFolders(CollectionType.SHARED);
    boolean found = false;
    for (FolderDetails details : subFolders) {
        found = details.getName().equalsIgnoreCase(permission.getDisplay()) && Long.toString(permission.getTypeId()).equals(details.getDescription());
        if (found)
            break;
    }
    Assert.assertTrue(found);
}

Example 23 with RemotePartner

use of org.jbei.ice.storage.model.RemotePartner in project ice by JBEI.

the class RemoteTransfer method transferFolder.

public FolderDetails transferFolder(long remoteId, FolderDetails folderDetails, List<Long> remoteIds) {
    RemotePartner partner = this.remotePartnerDAO.get(remoteId);
    if (partner == null)
        throw new IllegalArgumentException("Invalid remote host id: " + remoteId);
    FolderDetails details = remoteContact.transferFolder(partner.getUrl(), folderDetails);
    if (folderDetails == null) {
        Logger.error("Could not create remote folder");
        return null;
    }
    if (remoteIds == null || remoteIds.isEmpty()) {
        Logger.info("Skipping transfer of entries. List is empty");
        return details;
    }
    // move entries to the transferred entries
    EntrySelection entrySelection = new EntrySelection();
    entrySelection.getEntries().addAll(remoteIds);
    entrySelection.getDestination().add(details);
    entrySelection.setSelectionType(EntrySelectionType.FOLDER);
    remoteContact.addTransferredEntriesToFolder(partner.getUrl(), entrySelection);
    return details;
}

Example 24 with RemotePartner

use of org.jbei.ice.storage.model.RemotePartner in project ice by JBEI.

the class WoRController method getRegistryPartners.

public WebOfRegistries getRegistryPartners(boolean approvedOnly) {
    WebOfRegistries webOfRegistries = new WebOfRegistries();
    webOfRegistries.setWebEnabled(isWebEnabled());
    // retrieve actual partners
    List<RemotePartner> partners = dao.getRegistryPartners();
    ArrayList<RegistryPartner> registryPartners = new ArrayList<>();
    for (RemotePartner partner : partners) {
        if (approvedOnly && partner.getPartnerStatus() != RemotePartnerStatus.APPROVED)
            continue;
        registryPartners.add(partner.toDataTransferObject());
    }
    webOfRegistries.setPartners(registryPartners);
    return webOfRegistries;
}

Example 25 with RemotePartner

use of org.jbei.ice.storage.model.RemotePartner in project ice by JBEI.

the class RemoteContact method handleRemoteRemoveRequest.

public boolean handleRemoteRemoveRequest(String worToken, String url) {
    if (StringUtils.isEmpty(worToken) || StringUtils.isEmpty(url))
        return false;
    RemotePartner partner = dao.getByUrl(url);
    if (partner == null)
        return false;
    if (!partner.getAuthenticationToken().equals(tokenHash.encrypt(worToken, partner.getSalt()))) {
        Logger.error("Attempt to remove remote partner " + url + " with invalid worToken " + worToken);
        return false;
    }
    Logger.info("Deleting partner '" + url + "' at their request");
    // todo : contact other instances (if this is a master node)
    dao.delete(partner);
    return true;
}