Examples with ConceptReferenceTerm org.openmrs.ConceptReferenceTerm used on opensource projects

Example 1 with ConceptReferenceTerm

use of org.openmrs.ConceptReferenceTerm in project openmrs-core by openmrs.

the class HibernateConceptDAO method getConceptReferenceTermByCode.

/**
 * @see org.openmrs.api.db.ConceptDAO#getConceptReferenceTermByCode(java.lang.String,
 *      org.openmrs.ConceptSource)
 */
@SuppressWarnings("rawtypes")
@Override
public ConceptReferenceTerm getConceptReferenceTermByCode(String code, ConceptSource conceptSource) throws DAOException {
    Criteria criteria = sessionFactory.getCurrentSession().createCriteria(ConceptReferenceTerm.class);
    criteria.add(Restrictions.eq("code", code));
    criteria.add(Restrictions.eq("conceptSource", conceptSource));
    List terms = criteria.list();
    if (terms.isEmpty()) {
        return null;
    } else if (terms.size() > 1) {
        throw new APIException("ConceptReferenceTerm.foundMultipleTermsWithCodeInSource", new Object[] { code, conceptSource.getName() });
    }
    return (ConceptReferenceTerm) terms.get(0);
}

Example 2 with ConceptReferenceTerm

use of org.openmrs.ConceptReferenceTerm in project openmrs-core by openmrs.

the class ConceptReferenceTermValidator method validate.

/**
 * Checks that a given concept reference term object is valid.
 *
 * @see org.springframework.validation.Validator#validate(java.lang.Object,
 *      org.springframework.validation.Errors)
 * @should fail if the concept reference term object is null
 * @should fail if the name is a white space character
 * @should fail if the code is null
 * @should fail if the code is an empty string
 * @should fail if the code is a white space character
 * @should fail if the concept reference term code is a duplicate in its concept source
 * @should fail if the concept source is null
 * @should pass if all the required fields are set and valid
 * @should pass if the duplicate name is for a term from another concept source
 * @should pass if the duplicate code is for a term from another concept source
 * @should fail if a concept reference term map has no concept map type
 * @should fail if termB of a concept reference term map is not set
 * @should fail if a term is mapped to itself
 * @should fail if a term is mapped multiple times to the same term
 * @should pass validation if field lengths are correct
 * @should fail validation if field lengths are not correct
 */
@Override
public void validate(Object obj, Errors errors) throws APIException {
    if (obj == null || !(obj instanceof ConceptReferenceTerm)) {
        throw new IllegalArgumentException("The parameter obj should not be null and must be of type" + ConceptReferenceTerm.class);
    }
    ConceptReferenceTerm conceptReferenceTerm = (ConceptReferenceTerm) obj;
    String code = conceptReferenceTerm.getCode();
    boolean hasBlankFields = false;
    if (!StringUtils.hasText(code)) {
        errors.rejectValue("code", "ConceptReferenceTerm.error.codeRequired", "The code property is required for a concept reference term");
        hasBlankFields = true;
    }
    if (conceptReferenceTerm.getConceptSource() == null) {
        errors.rejectValue("conceptSource", "ConceptReferenceTerm.error.sourceRequired", "The conceptSource property is required for a concept reference term");
        hasBlankFields = true;
    }
    if (hasBlankFields) {
        return;
    }
    code = code.trim();
    // Ensure that there are no terms with the same code in the same source
    ConceptReferenceTerm termWithDuplicateCode = Context.getConceptService().getConceptReferenceTermByCode(code, conceptReferenceTerm.getConceptSource());
    if (termWithDuplicateCode != null && !OpenmrsUtil.nullSafeEquals(termWithDuplicateCode.getUuid(), conceptReferenceTerm.getUuid())) {
        errors.rejectValue("code", "ConceptReferenceTerm.duplicate.code", "Duplicate concept reference term code in its concept source: " + code);
    }
    // validate the concept reference term maps
    if (CollectionUtils.isNotEmpty(conceptReferenceTerm.getConceptReferenceTermMaps())) {
        int index = 0;
        Set<String> mappedTermUuids = null;
        for (ConceptReferenceTermMap map : conceptReferenceTerm.getConceptReferenceTermMaps()) {
            if (map == null) {
                throw new APIException("ConceptReferenceTerm.add.null", (Object[]) null);
            }
            if (map.getConceptMapType() == null) {
                errors.rejectValue("conceptReferenceTermMaps[" + index + "].conceptMapType", "ConceptReferenceTerm.error.mapTypeRequired", "Concept Map Type is required");
            } else if (map.getTermB() == null) {
                errors.rejectValue("conceptReferenceTermMaps[" + index + "].termB", "ConceptReferenceTerm.error.termBRequired", "Mapped Term is required");
            } else if (map.getTermB().equals(conceptReferenceTerm)) {
                errors.rejectValue("conceptReferenceTermMaps[" + index + "].termB", "ConceptReferenceTerm.map.sameTerm", "Cannot map a concept reference term to itself");
            }
            // don't proceed to the next map
            if (errors.hasErrors()) {
                return;
            }
            if (mappedTermUuids == null) {
                mappedTermUuids = new HashSet<>();
            }
            // if we already have a mapping to this term, reject it this map
            if (!mappedTermUuids.add(map.getTermB().getUuid())) {
                errors.rejectValue("conceptReferenceTermMaps[" + index + "].termB", "ConceptReferenceTerm.termToTerm.alreadyMapped", "Cannot map a reference term multiple times to the same concept reference term");
            }
            index++;
        }
    }
    ValidateUtil.validateFieldLengths(errors, obj.getClass(), "name", "code", "version", "description", "retireReason");
}

Example 3 with ConceptReferenceTerm

use of org.openmrs.ConceptReferenceTerm in project openmrs-core by openmrs.

the class DrugValidator method validate.

/**
 * Validates an Drug object
 *
 * @see org.springframework.validation.Validator#validate(java.lang.Object,
 *      org.springframework.validation.Errors)
 * @should fail if the drug object is null
 * @should fail if drug on drugReferenceMap is null
 * @should fail if conceptReferenceTerm on drugReferenceMap is null
 * @should invoke ConceptReferenceTermValidator if term on drugReferenceMap is new
 * @should invoke ConceptMapTypeValidator if conceptMapType on drugReferenceMap is new
 * @should pass if all fields are correct
 * @should reject drug multiple mappings to the same term
 * @should pass validation if field lengths are correct
 * @should fail validation if field lengths are not correct
 */
@Override
public void validate(Object obj, Errors errors) {
    if (obj == null || !(obj instanceof Drug)) {
        throw new IllegalArgumentException("The parameter obj should not be null and must be of type" + Drug.class);
    } else {
        Drug drug = (Drug) obj;
        Set<DrugReferenceMap> drugReferenceMaps = drug.getDrugReferenceMaps();
        Set<String> mappedTermUuids = new HashSet<>();
        int index = 0;
        for (DrugReferenceMap referenceMap : drugReferenceMaps) {
            Drug mappedDrug = referenceMap.getDrug();
            ConceptReferenceTerm referenceTerm = referenceMap.getConceptReferenceTerm();
            ConceptMapType mapType = referenceMap.getConceptMapType();
            if (mappedDrug == null) {
                errors.rejectValue("drugReferenceMaps[" + index + "].drug", "Drug.drugReferenceMap.mappedDrug");
            }
            if (referenceTerm == null) {
                errors.rejectValue("drugReferenceMaps[" + index + "].conceptReferenceTerm", "Drug.drugReferenceMap.conceptReferenceTerm");
            } else if (referenceTerm.getConceptReferenceTermId() == null) {
                try {
                    errors.pushNestedPath("drugReferenceMaps[" + index + "].conceptReferenceTerm");
                    ValidationUtils.invokeValidator(new ConceptReferenceTermValidator(), referenceTerm, errors);
                } finally {
                    errors.popNestedPath();
                }
            }
            if (mapType == null) {
                errors.rejectValue("drugReferenceMaps[" + index + "].conceptMapType", "Drug.drugReferenceMap.conceptMapType");
            } else if (mapType.getConceptMapTypeId() == null) {
                try {
                    errors.pushNestedPath("drugReferenceMaps[" + index + "].conceptMapType");
                    ValidationUtils.invokeValidator(new ConceptMapTypeValidator(), mapType, errors);
                } finally {
                    errors.popNestedPath();
                }
            }
            // don't proceed to the next map
            if (errors.hasErrors()) {
                return;
            }
            // if we already have a mapping to this term, reject it this map
            if (!mappedTermUuids.add(referenceMap.getConceptReferenceTerm().getUuid())) {
                errors.rejectValue("drugReferenceMaps[" + index + "].conceptReferenceTerm", "Drug.drugReferenceMap.termAlreadyMapped", "Cannot map a drug multiple times to the same reference term");
            }
            index++;
        }
        ValidateUtil.validateFieldLengths(errors, obj.getClass(), "name", "retireReason", "strength");
    }
}

Example 4 with ConceptReferenceTerm

use of org.openmrs.ConceptReferenceTerm in project openmrs-core by openmrs.

the class ConceptValidatorTest method validate_shouldNotFailIfATermHasTwoNewMappingsOnIt.

@Test
public void validate_shouldNotFailIfATermHasTwoNewMappingsOnIt() {
    concept.addName(new ConceptName("my name", Context.getLocale()));
    ConceptReferenceTerm newTerm = new ConceptReferenceTerm(conceptService.getConceptSource(1), "1234", "term one two three four");
    ConceptMap map1 = new ConceptMap(newTerm, conceptService.getConceptMapType(1));
    concept.addConceptMapping(map1);
    ConceptReferenceTerm newTermTwo = new ConceptReferenceTerm(conceptService.getConceptSource(1), "12345", "term one two three four five");
    ConceptMap map2 = new ConceptMap(newTermTwo, conceptService.getConceptMapType(1));
    concept.addConceptMapping(map2);
    validator.validate(concept, errors);
    assertThat(errors, not(hasFieldErrors("conceptMappings[1]")));
}

Example 5 with ConceptReferenceTerm

use of org.openmrs.ConceptReferenceTerm in project openmrs-core by openmrs.

the class DrugValidatorTest method validate_shouldInvokeConceptReferenceTermValidatorIfTermOnDrugReferenceMapIsNew.

/**
 * @see DrugValidator#validate(Object, org.springframework.validation.Errors)
 */
@Test
public void validate_shouldInvokeConceptReferenceTermValidatorIfTermOnDrugReferenceMapIsNew() {
    Drug drug = new Drug();
    drug.addDrugReferenceMap(new DrugReferenceMap(new ConceptReferenceTerm(), null));
    Errors errors = new BindException(drug, "drug");
    new DrugValidator().validate(drug, errors);
    // reference term validator should have been called which should reject a null code
    Assert.assertTrue(errors.hasFieldErrors("drugReferenceMaps[0].conceptReferenceTerm.code"));
}