Examples with ExternalIdReference org.orcid.jaxb.model.message.ExternalIdReference used on opensource projects

Example 6 with ExternalIdReference

use of org.orcid.jaxb.model.message.ExternalIdReference in project ORCID-Source by ORCID.

the class OrcidProfileManagerImplTest method setBio.

private void setBio(OrcidProfile profile, Visibility defaultVisibility) {
    OrcidBio bio = new OrcidBio();
    Biography biography = new Biography("This is my biography");
    if (defaultVisibility != null) {
        biography.setVisibility(defaultVisibility);
    }
    bio.setBiography(biography);
    ContactDetails contactDetails = new ContactDetails();
    Address address = new Address();
    address.setCountry(new Country(Iso3166Country.US));
    if (defaultVisibility != null) {
        address.getCountry().setVisibility(defaultVisibility);
    }
    contactDetails.setAddress(address);
    List<Email> emails = new ArrayList<Email>();
    Email email = new Email();
    email.setPrimary(true);
    email.setValue(System.currentTimeMillis() + "@test.orcid.org");
    emails.add(email);
    contactDetails.setEmail(emails);
    bio.setContactDetails(contactDetails);
    ExternalIdentifiers extIds = new ExternalIdentifiers();
    ExternalIdentifier extId = new ExternalIdentifier();
    extId.setExternalIdCommonName(new ExternalIdCommonName("common-name"));
    extId.setExternalIdReference(new ExternalIdReference("ext-id-reference"));
    extId.setExternalIdUrl(new ExternalIdUrl("http://orcid.org/ext-id"));
    extIds.getExternalIdentifier().add(extId);
    if (defaultVisibility != null) {
        extIds.setVisibility(defaultVisibility);
    }
    bio.setExternalIdentifiers(extIds);
    Keywords keywords = new Keywords();
    Keyword keyword = new Keyword();
    keyword.setContent("k1");
    keywords.getKeyword().add(keyword);
    if (defaultVisibility != null) {
        keywords.setVisibility(defaultVisibility);
    }
    bio.setKeywords(keywords);
    PersonalDetails personalDetails = new PersonalDetails();
    personalDetails.setCreditName(new CreditName("credit-name"));
    personalDetails.setGivenNames(new GivenNames("given-names"));
    personalDetails.setFamilyName(new FamilyName("family-name"));
    OtherNames otherNames = new OtherNames();
    OtherName otherName = new OtherName();
    otherName.setContent("o1");
    otherNames.getOtherName().add(otherName);
    if (defaultVisibility != null) {
        otherNames.setVisibility(defaultVisibility);
    }
    personalDetails.setOtherNames(otherNames);
    bio.setPersonalDetails(personalDetails);
    ResearcherUrls researcherUrls = new ResearcherUrls();
    ResearcherUrl researcherUrl = new ResearcherUrl();
    researcherUrl.setUrl(new Url("http://orcid.org/researcher-url-1"));
    researcherUrl.setUrlName(new UrlName("url-name-1"));
    researcherUrls.getResearcherUrl().add(researcherUrl);
    if (defaultVisibility != null) {
        researcherUrls.setVisibility(defaultVisibility);
    }
    bio.setResearcherUrls(researcherUrls);
    profile.setOrcidBio(bio);
}

Example 7 with ExternalIdReference

use of org.orcid.jaxb.model.message.ExternalIdReference in project ORCID-Source by ORCID.

the class T2OrcidApiServiceDelegatorTest method testDefaultPrivacyOnBio.

@Test
public void testDefaultPrivacyOnBio() {
    SecurityContextTestUtils.setUpSecurityContext("4444-4444-4444-4499", ScopePathType.ORCID_BIO_UPDATE);
    OrcidMessage orcidMessage = new OrcidMessage();
    orcidMessage.setMessageVersion("1.2_rc6");
    OrcidProfile orcidProfile = new OrcidProfile();
    orcidProfile.setOrcidIdentifier(new OrcidIdentifier("4444-4444-4444-4499"));
    orcidMessage.setOrcidProfile(orcidProfile);
    OrcidBio orcidBio = new OrcidBio();
    orcidProfile.setOrcidBio(orcidBio);
    PersonalDetails personalDetails = new PersonalDetails();
    orcidBio.setPersonalDetails(personalDetails);
    GivenNames givenNames = new GivenNames("Test given names");
    personalDetails.setGivenNames(givenNames);
    CreditName creditName = new CreditName("Credit Name");
    personalDetails.setCreditName(creditName);
    ExternalIdentifier id = new ExternalIdentifier();
    id.setExternalIdCommonName(new ExternalIdCommonName("cn1"));
    id.setExternalIdReference(new ExternalIdReference("value1"));
    orcidBio.setExternalIdentifiers(new ExternalIdentifiers());
    orcidBio.getExternalIdentifiers().getExternalIdentifier().add(id);
    personalDetails.setOtherNames(new OtherNames());
    personalDetails.getOtherNames().addOtherName("on1", null);
    orcidBio.setKeywords(new Keywords());
    orcidBio.getKeywords().getKeyword().add(new Keyword("kw1", null));
    orcidBio.setResearcherUrls(new ResearcherUrls());
    orcidBio.getResearcherUrls().getResearcherUrl().add(new ResearcherUrl(new Url("http://rurl2.com"), null));
    t2OrcidApiServiceDelegator.updateBioDetails(mockedUriInfo, "4444-4444-4444-4499", orcidMessage);
    OrcidProfile p = orcidProfileManager.retrieveOrcidProfile("4444-4444-4444-4499");
    assertEquals("cn1", p.getOrcidBio().getExternalIdentifiers().getExternalIdentifier().get(0).getExternalIdCommonName().getContent());
    assertEquals(Visibility.PUBLIC, p.getOrcidBio().getExternalIdentifiers().getVisibility());
    assertEquals("on1", p.getOrcidBio().getPersonalDetails().getOtherNames().getOtherName().get(0).getContent());
    assertEquals(Visibility.PUBLIC, p.getOrcidBio().getPersonalDetails().getOtherNames().getVisibility());
    assertEquals("kw1", p.getOrcidBio().getKeywords().getKeyword().get(0).getContent());
    assertEquals(Visibility.PUBLIC, p.getOrcidBio().getKeywords().getVisibility());
    assertEquals(new Url("http://rurl2.com"), p.getOrcidBio().getResearcherUrls().getResearcherUrl().get(0).getUrl());
    assertEquals(Visibility.PUBLIC, p.getOrcidBio().getResearcherUrls().getVisibility());
//now test what happens if we add a new one.
}

Example 8 with ExternalIdReference

use of org.orcid.jaxb.model.message.ExternalIdReference in project ORCID-Source by ORCID.

the class T2OrcidApiServiceDelegatorTest method testAddDuplicatedExtIdsDontModifyProfile.

@Test
public void testAddDuplicatedExtIdsDontModifyProfile() {
    String userOrcid = "0000-0000-0000-0005";
    OrcidMessage message = new OrcidMessage();
    message.setMessageVersion("1.2_rc6");
    message.setOrcidProfile(new OrcidProfile());
    message.getOrcidProfile().setOrcidBio(new OrcidBio());
    ExternalIdentifiers extIds = new ExternalIdentifiers();
    ExternalIdentifier extId1 = new ExternalIdentifier();
    String commonName = "common-name-1-" + System.currentTimeMillis();
    extId1.setExternalIdCommonName(new ExternalIdCommonName(commonName));
    extId1.setExternalIdReference(new ExternalIdReference("ext-id-reference-1"));
    extId1.setExternalIdUrl(new ExternalIdUrl("http://test.orcid.org/" + System.currentTimeMillis()));
    extIds.getExternalIdentifier().add(extId1);
    message.getOrcidProfile().getOrcidBio().setExternalIdentifiers(extIds);
    // Add for client 1
    SecurityContextTestUtils.setUpSecurityContext(userOrcid, "APP-5555555555555555", ScopePathType.PERSON_UPDATE, ScopePathType.PERSON_READ_LIMITED);
    Response r = t2OrcidApiServiceDelegator.addExternalIdentifiers(null, userOrcid, message);
    assertNotNull(r);
    OrcidMessage newMessage1 = (OrcidMessage) r.getEntity();
    assertNotNull(newMessage1);
    assertNotNull(newMessage1.getOrcidProfile());
    assertNotNull(newMessage1.getOrcidProfile().getOrcidBio());
    assertNotNull(newMessage1.getOrcidProfile().getOrcidBio().getExternalIdentifiers());
    assertNotNull(newMessage1.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier());
    assertEquals(1, newMessage1.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier().size());
    assertEquals(commonName, newMessage1.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier().get(0).getExternalIdCommonName().getContent());
    assertEquals("APP-5555555555555555", newMessage1.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier().get(0).getSource().retrieveSourcePath());
    // Reset message to add it again
    message = new OrcidMessage();
    message.setMessageVersion("1.2_rc6");
    message.setOrcidProfile(new OrcidProfile());
    message.getOrcidProfile().setOrcidBio(new OrcidBio());
    extId1.setSource(null);
    message.getOrcidProfile().getOrcidBio().setExternalIdentifiers(extIds);
    r = t2OrcidApiServiceDelegator.addExternalIdentifiers(null, userOrcid, message);
    // If we add it again, no error, but it is not duplicated
    assertNotNull(r);
    OrcidMessage newMessage2 = (OrcidMessage) r.getEntity();
    assertNotNull(newMessage2);
    assertNotNull(newMessage2.getOrcidProfile());
    assertNotNull(newMessage2.getOrcidProfile().getOrcidBio());
    assertNotNull(newMessage2.getOrcidProfile().getOrcidBio().getExternalIdentifiers());
    assertNotNull(newMessage2.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier());
    assertEquals(1, newMessage2.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier().size());
    assertEquals(commonName, newMessage2.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier().get(0).getExternalIdCommonName().getContent());
    assertEquals("APP-5555555555555555", newMessage2.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier().get(0).getSource().retrieveSourcePath());
}

Example 9 with ExternalIdReference

use of org.orcid.jaxb.model.message.ExternalIdReference in project ORCID-Source by ORCID.

the class Api12MembersTest method addExternalIdentifiersTest.

@Test
public void addExternalIdentifiersTest() throws InterruptedException, JSONException {
    String clientId = getClient1ClientId();
    String clientRedirectUri = getClient1RedirectUri();
    String clientSecret = getClient1ClientSecret();
    String userId = getUser1OrcidId();
    String password = getUser1Password();
    String accessToken = getAccessToken(userId, password, Arrays.asList("/person/update", "/orcid-bio/read-limited"), clientId, clientSecret, clientRedirectUri, true);
    // Check the current record and get the num of existing ext ids
    ClientResponse response = t2OAuthClient_1_2.viewBioDetailsXml(userId, accessToken);
    assertNotNull(response);
    assertEquals(200, response.getStatus());
    OrcidMessage orcidMessageWithExtIds = response.getEntity(OrcidMessage.class);
    assertNotNull(orcidMessageWithExtIds);
    assertNotNull(orcidMessageWithExtIds.getOrcidProfile());
    assertNotNull(orcidMessageWithExtIds.getOrcidProfile().getOrcidBio());
    int initialNumberOfExtIds = 0;
    if (orcidMessageWithExtIds.getOrcidProfile().getOrcidBio().getExternalIdentifiers() != null && orcidMessageWithExtIds.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier() != null) {
        initialNumberOfExtIds = orcidMessageWithExtIds.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier().size();
    }
    OrcidMessage orcidMessage = new OrcidMessage();
    orcidMessage.setMessageVersion(OrcidMessage.DEFAULT_VERSION);
    OrcidProfile orcidProfile = new OrcidProfile();
    OrcidBio orcidBio = new OrcidBio();
    ExternalIdentifier extId = new ExternalIdentifier();
    Long time = System.currentTimeMillis();
    String commonName = "ext-id-common-name-" + time;
    String idReference = "ext-id-reference-" + time;
    extId.setExternalIdCommonName(new ExternalIdCommonName(commonName));
    extId.setExternalIdReference(new ExternalIdReference(idReference));
    ExternalIdentifiers extIds = new ExternalIdentifiers();
    extIds.getExternalIdentifier().add(extId);
    orcidBio.setExternalIdentifiers(extIds);
    orcidProfile.setOrcidBio(orcidBio);
    orcidMessage.setOrcidProfile(orcidProfile);
    ClientResponse clientResponse = t2OAuthClient_1_2.addExternalIdentifiersXml(userId, orcidMessage, accessToken);
    assertEquals(200, clientResponse.getStatus());
    response = t2OAuthClient_1_2.viewBioDetailsXml(userId, accessToken);
    assertNotNull(response);
    assertEquals(200, response.getStatus());
    orcidMessageWithExtIds = response.getEntity(OrcidMessage.class);
    assertNotNull(orcidMessageWithExtIds);
    assertNotNull(orcidMessageWithExtIds.getOrcidProfile());
    assertNotNull(orcidMessageWithExtIds.getOrcidProfile().getOrcidBio());
    assertNotNull(orcidMessageWithExtIds.getOrcidProfile().getOrcidBio().getExternalIdentifiers());
    boolean found = false;
    for (ExternalIdentifier newExtId : orcidMessageWithExtIds.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier()) {
        if (commonName.equals(newExtId.getExternalIdCommonName().getContent())) {
            assertEquals(idReference, newExtId.getExternalIdReference().getContent());
            found = true;
        }
    }
    assertTrue(found);
    // Try to add a duplicate
    long initialSize = orcidMessageWithExtIds.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier().size();
    ExternalIdentifier dupExtId = new ExternalIdentifier();
    dupExtId.setExternalIdCommonName(new ExternalIdCommonName(commonName));
    dupExtId.setExternalIdReference(new ExternalIdReference(idReference));
    orcidMessageWithExtIds.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier().add(dupExtId);
    assertEquals(initialSize + 1, orcidMessageWithExtIds.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier().size());
    clientResponse = t2OAuthClient_1_2.addExternalIdentifiersXml(userId, orcidMessageWithExtIds, accessToken);
    assertEquals(200, clientResponse.getStatus());
    response = t2OAuthClient_1_2.viewBioDetailsXml(userId, accessToken);
    assertNotNull(response);
    assertEquals(200, response.getStatus());
    orcidMessageWithExtIds = response.getEntity(OrcidMessage.class);
    assertNotNull(orcidMessageWithExtIds);
    assertNotNull(orcidMessageWithExtIds.getOrcidProfile());
    assertNotNull(orcidMessageWithExtIds.getOrcidProfile().getOrcidBio());
    assertNotNull(orcidMessageWithExtIds.getOrcidProfile().getOrcidBio().getExternalIdentifiers());
    assertEquals(initialSize, orcidMessageWithExtIds.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier().size());
    found = false;
    for (ExternalIdentifier newExtId : orcidMessageWithExtIds.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier()) {
        if (commonName.equals(newExtId.getExternalIdCommonName().getContent())) {
            assertEquals(idReference, newExtId.getExternalIdReference().getContent());
            found = true;
        }
    }
    assertTrue(found);
    // Add a new one and the duplicate again, verify only the new one was added  
    String newExtIdValue = "new-ext-id-" + System.currentTimeMillis();
    ExternalIdentifier newExtId = new ExternalIdentifier();
    newExtId.setExternalIdCommonName(new ExternalIdCommonName(newExtIdValue));
    newExtId.setExternalIdReference(new ExternalIdReference(newExtIdValue));
    orcidMessageWithExtIds.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier().add(dupExtId);
    orcidMessageWithExtIds.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier().add(newExtId);
    assertEquals(initialSize + 2, orcidMessageWithExtIds.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier().size());
    clientResponse = t2OAuthClient_1_2.addExternalIdentifiersXml(userId, orcidMessageWithExtIds, accessToken);
    assertEquals(200, clientResponse.getStatus());
    response = t2OAuthClient_1_2.viewBioDetailsXml(userId, accessToken);
    assertNotNull(response);
    assertEquals(200, response.getStatus());
    orcidMessageWithExtIds = response.getEntity(OrcidMessage.class);
    assertNotNull(orcidMessageWithExtIds);
    assertNotNull(orcidMessageWithExtIds.getOrcidProfile());
    assertNotNull(orcidMessageWithExtIds.getOrcidProfile().getOrcidBio());
    assertNotNull(orcidMessageWithExtIds.getOrcidProfile().getOrcidBio().getExternalIdentifiers());
    assertEquals(initialSize + 1, orcidMessageWithExtIds.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier().size());
    boolean foundOld = false;
    boolean foundNew = false;
    for (ExternalIdentifier element : orcidMessageWithExtIds.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier()) {
        if (commonName.equals(element.getExternalIdCommonName().getContent())) {
            assertEquals(idReference, element.getExternalIdReference().getContent());
            foundOld = true;
        } else if (newExtIdValue.equals(element.getExternalIdCommonName().getContent())) {
            assertEquals(newExtIdValue, element.getExternalIdReference().getContent());
            foundNew = true;
        }
    }
    assertTrue(foundOld);
    assertTrue(foundNew);
    // Delete both ext ids
    response = t2OAuthClient_1_2.viewBioDetailsXml(userId, accessToken);
    assertNotNull(response);
    assertEquals(200, response.getStatus());
    orcidMessageWithExtIds = response.getEntity(OrcidMessage.class);
    Iterator<ExternalIdentifier> it = orcidMessageWithExtIds.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier().iterator();
    while (it.hasNext()) {
        ExternalIdentifier element = it.next();
        if (commonName.equals(element.getExternalIdCommonName().getContent()) || newExtIdValue.equals(element.getExternalIdCommonName().getContent())) {
            it.remove();
        }
    }
    clientResponse = t2OAuthClient_1_2.addExternalIdentifiersXml(userId, orcidMessageWithExtIds, accessToken);
    assertEquals(200, clientResponse.getStatus());
    response = t2OAuthClient_1_2.viewBioDetailsXml(userId, accessToken);
    assertNotNull(response);
    assertEquals(200, response.getStatus());
    // It should have the same number of ext ids as before the test
    assertEquals(initialNumberOfExtIds, orcidMessageWithExtIds.getOrcidProfile().getOrcidBio().getExternalIdentifiers().getExternalIdentifier().size());
}

Example 10 with ExternalIdReference

use of org.orcid.jaxb.model.message.ExternalIdReference in project ORCID-Source by ORCID.

the class OrcidProfileManagerImplTest method testDeactivateProfile.

@Test
@Transactional
@Rollback(true)
public void testDeactivateProfile() {
    OrcidProfile profile1 = createBasicProfile();
    profile1.getOrcidBio().getPersonalDetails().setCreditName(new CreditName("My Credit Name"));
    ExternalIdentifiers extIds = new ExternalIdentifiers();
    ExternalIdentifier extId = new ExternalIdentifier();
    extId.setExternalIdCommonName(new ExternalIdCommonName("External body"));
    extId.setExternalIdReference(new ExternalIdReference("abc123"));
    extIds.getExternalIdentifier().add(extId);
    profile1.getOrcidBio().setExternalIdentifiers(extIds);
    OtherNames otherNames = new OtherNames();
    otherNames.addOtherName("OtherName 1", null);
    otherNames.addOtherName("OtherName 2", null);
    profile1.getOrcidBio().getPersonalDetails().setOtherNames(otherNames);
    profile1 = orcidProfileManager.createOrcidProfile(profile1, false, false);
    assertEquals(1, profile1.getOrcidBio().getExternalIdentifiers().getExternalIdentifier().size());
    assertEquals(2, profile1.getOrcidBio().getPersonalDetails().getOtherNames().getOtherName().size());
    assertEquals("My Credit Name", profile1.getOrcidBio().getPersonalDetails().getCreditName().getContent());
    assertEquals(Visibility.PRIVATE, profile1.getOrcidBio().getExternalIdentifiers().getExternalIdentifier().iterator().next().getVisibility());
    orcidProfileManager.deactivateOrcidProfile(profile1);
    OrcidProfile retrievedProfile = orcidProfileManager.retrieveOrcidProfile(profile1.getOrcidIdentifier().getPath());
    assertTrue(retrievedProfile.getOrcidBio().getExternalIdentifiers().getExternalIdentifier().isEmpty());
    assertNull(retrievedProfile.getOrcidBio().getPersonalDetails().getCreditName());
    assertEquals(0, retrievedProfile.getOrcidBio().getPersonalDetails().getOtherNames().getOtherName().size());
    assertEquals("Given Names Deactivated", retrievedProfile.getOrcidBio().getPersonalDetails().getGivenNames().getContent());
    assertEquals("Family Name Deactivated", retrievedProfile.getOrcidBio().getPersonalDetails().getFamilyName().getContent());
    assertNull(retrievedProfile.getOrcidBio().getBiography().getContent());
}