Examples with OrcidBio org.orcid.jaxb.model.message.OrcidBio used on opensource projects

Example 26 with OrcidBio

use of org.orcid.jaxb.model.message.OrcidBio in project ORCID-Source by ORCID.

the class OrcidProfileManagerImpl method addExternalIdentifiers.

/**
     * Add new external identifiers to an existing profile
     * 
     * @param updatedOrcidProfile
     * @return
     */
@Override
@Transactional
public OrcidProfile addExternalIdentifiers(OrcidProfile updatedOrcidProfile) {
    OrcidProfile existingProfile = retrieveOrcidProfile(updatedOrcidProfile.getOrcidIdentifier().getPath());
    if (existingProfile != null && existingProfile.getOrcidBio() != null) {
        OrcidBio orcidBio = existingProfile.getOrcidBio();
        ExternalIdentifiers externalIdentifiers = orcidBio.getExternalIdentifiers();
        if (externalIdentifiers == null) {
            orcidBio.setExternalIdentifiers(new ExternalIdentifiers());
        }
        ExternalIdentifiers externalIdentifier = updatedOrcidProfile.getOrcidBio().getExternalIdentifiers();
        List<ExternalIdentifier> updatedExternalIdentifiers = externalIdentifier.getExternalIdentifier();
        List<ExternalIdentifier> existingExternalIdentifiers = orcidBio.getExternalIdentifiers().getExternalIdentifier();
        // Copy all the existing external identifiers to the updated profile
        for (ExternalIdentifier ei : existingExternalIdentifiers) {
            updatedExternalIdentifiers.add(ei);
        }
        orcidJaxbCopyManager.copyUpdatedExternalIdentifiersToExistingPreservingVisibility(orcidBio, updatedOrcidProfile.getOrcidBio());
        OrcidProfile profileToReturn = updateOrcidProfile(existingProfile);
        notificationManager.sendAmendEmail(profileToReturn, AmendedSection.EXTERNAL_IDENTIFIERS);
        return profileToReturn;
    } else {
        return null;
    }
}

Example 27 with OrcidBio

use of org.orcid.jaxb.model.message.OrcidBio in project ORCID-Source by ORCID.

the class SourceInActivitiesTest method getMinimalOrcidProfile.

private OrcidProfile getMinimalOrcidProfile() {
    OrcidProfile profile = new OrcidProfile();
    OrcidBio bio = new OrcidBio();
    ContactDetails contactDetails = new ContactDetails();
    contactDetails.addOrReplacePrimaryEmail(new org.orcid.jaxb.model.message.Email(System.currentTimeMillis() + "@user.com"));
    Preferences preferences = new Preferences();
    preferences.setSendChangeNotifications(new SendChangeNotifications(true));
    preferences.setSendOrcidNews(new SendOrcidNews(true));
    preferences.setSendMemberUpdateRequests(true);
    preferences.setSendEmailFrequencyDays("1");
    preferences.setActivitiesVisibilityDefault(new ActivitiesVisibilityDefault(Visibility.fromValue("public")));
    PersonalDetails personalDetails = new PersonalDetails();
    personalDetails.setFamilyName(new FamilyName("First"));
    personalDetails.setGivenNames(new GivenNames("Last"));
    bio.setContactDetails(contactDetails);
    bio.setPersonalDetails(personalDetails);
    OrcidInternal internal = new OrcidInternal();
    internal.setPreferences(preferences);
    profile.setOrcidBio(bio);
    profile.setOrcidInternal(internal);
    OrcidHistory orcidHistory = new OrcidHistory();
    orcidHistory.setClaimed(new Claimed(true));
    orcidHistory.setCreationMethod(CreationMethod.fromValue("integration-test"));
    profile.setOrcidHistory(orcidHistory);
    orcidHistory.setSubmissionDate(new SubmissionDate(DateUtils.convertToXMLGregorianCalendar(new Date())));
    profile.setPassword("password1");
    return orcidProfileManager.createOrcidProfile(profile, false, false);
}

Example 28 with OrcidBio

use of org.orcid.jaxb.model.message.OrcidBio in project ORCID-Source by ORCID.

the class OrcidIndexManagerImplTest method getOrcidProfileMandatoryOnly.

/**
     * According to the validation rules on the web front end, these fields are
     * mandatory. Ultimately they may or may not make it into SOLR due to
     * visibility restrictions
     * 
     * @return OrcidProfile with only mandatory fields populated.
     */
private OrcidProfile getOrcidProfileMandatoryOnly() {
    OrcidProfile orcidProfile = new OrcidProfile();
    orcidProfile.setOrcidIdentifier("5678");
    OrcidBio orcidBio = new OrcidBio();
    orcidProfile.setOrcidBio(orcidBio);
    ContactDetails contactDetails = new ContactDetails();
    contactDetails.addOrReplacePrimaryEmail(new Email("stan@test.com"));
    orcidBio.setContactDetails(contactDetails);
    PersonalDetails personalDetails = new PersonalDetails();
    FamilyName familyName = new FamilyName("Logan");
    familyName.setVisibility(Visibility.PUBLIC);
    personalDetails.setFamilyName(familyName);
    GivenNames givenNames = new GivenNames("Donald Edward");
    givenNames.setVisibility(Visibility.PUBLIC);
    personalDetails.setGivenNames(givenNames);
    orcidBio.setPersonalDetails(personalDetails);
    OrcidActivities orcidActivities = new OrcidActivities();
    orcidProfile.setOrcidActivities(orcidActivities);
    Affiliations affiliations = new Affiliations();
    orcidActivities.setAffiliations(affiliations);
    return orcidProfile;
}

Example 29 with OrcidBio

use of org.orcid.jaxb.model.message.OrcidBio in project ORCID-Source by ORCID.

the class OrcidIndexManagerImplTest method getStandardOrcid.

private OrcidProfile getStandardOrcid() {
    OrcidProfile orcidProfile = new OrcidProfile();
    orcidProfile.setOrcidIdentifier("1234");
    OrcidBio orcidBio = new OrcidBio();
    ContactDetails contactDetails = new ContactDetails();
    Email email = new Email("email");
    email.setVisibility(Visibility.PUBLIC);
    contactDetails.addOrReplacePrimaryEmail(email);
    orcidBio.setContactDetails(contactDetails);
    Keywords bioKeywords = new Keywords();
    bioKeywords.getKeyword().add(new Keyword("Pavement Studies", Visibility.PUBLIC));
    bioKeywords.getKeyword().add(new Keyword("Advanced Tea Making", Visibility.PUBLIC));
    bioKeywords.setVisibility(Visibility.PUBLIC);
    orcidBio.setKeywords(bioKeywords);
    PersonalDetails personalDetails = new PersonalDetails();
    CreditName creditName = new CreditName("credit name");
    creditName.setVisibility(Visibility.PUBLIC);
    personalDetails.setCreditName(creditName);
    FamilyName familyName = new FamilyName("familyName");
    familyName.setVisibility(Visibility.PUBLIC);
    personalDetails.setFamilyName(familyName);
    OtherNames otherNames = new OtherNames();
    otherNames.setVisibility(Visibility.PUBLIC);
    otherNames.getOtherName().add(new OtherName("Other 1", Visibility.PUBLIC));
    otherNames.getOtherName().add(new OtherName("Other 2", Visibility.PUBLIC));
    personalDetails.setOtherNames(otherNames);
    GivenNames givenNames = new GivenNames("givenNames");
    givenNames.setVisibility(Visibility.PUBLIC);
    personalDetails.setGivenNames(givenNames);
    orcidBio.setPersonalDetails(personalDetails);
    ExternalIdentifiers externalIdentifiers = new ExternalIdentifiers();
    externalIdentifiers.setVisibility(Visibility.PUBLIC);
    orcidBio.setExternalIdentifiers(externalIdentifiers);
    ExternalIdentifier externalIdentifier1 = createExternalIdentifier("45678", "defghi");
    externalIdentifiers.getExternalIdentifier().add(externalIdentifier1);
    ExternalIdentifier externalIdentifier2 = createExternalIdentifier("54321", "abc123");
    externalIdentifiers.getExternalIdentifier().add(externalIdentifier2);
    OrcidActivities orcidActivities = new OrcidActivities();
    orcidProfile.setOrcidActivities(orcidActivities);
    Affiliations affiliations = new Affiliations();
    orcidActivities.setAffiliations(affiliations);
    FundingList fundings = new FundingList();
    orcidActivities.setFundings(fundings);
    OrcidWorks orcidWorks = new OrcidWorks();
    OrcidWork orcidWork1 = new OrcidWork();
    orcidWork1.setVisibility(Visibility.PUBLIC);
    OrcidWork orcidWork2 = new OrcidWork();
    orcidWork2.setVisibility(Visibility.PUBLIC);
    OrcidWork orcidWork3 = new OrcidWork();
    orcidWork3.setVisibility(Visibility.LIMITED);
    WorkTitle workTitle1 = new WorkTitle();
    Title title1 = new Title("Work title 1");
    workTitle1.setTitle(title1);
    workTitle1.setSubtitle(null);
    orcidWork1.setWorkTitle(workTitle1);
    WorkExternalIdentifier wei = new WorkExternalIdentifier();
    wei.setWorkExternalIdentifierId(new WorkExternalIdentifierId("work1-pmid"));
    wei.setWorkExternalIdentifierType(WorkExternalIdentifierType.PMID);
    orcidWork1.setWorkExternalIdentifiers(new WorkExternalIdentifiers(Arrays.asList(wei)));
    WorkTitle workTitle2 = new WorkTitle();
    Title title2 = new Title("Work title 2");
    workTitle2.setSubtitle(null);
    workTitle2.setTitle(title2);
    orcidWork2.setWorkTitle(workTitle2);
    WorkTitle workTitle3 = new WorkTitle();
    Title title3 = new Title("Work Title 3");
    workTitle3.setSubtitle(null);
    workTitle3.setTitle(title3);
    orcidWork3.setWorkTitle(workTitle3);
    orcidWorks.setOrcidWork(new ArrayList<OrcidWork>(Arrays.asList(new OrcidWork[] { orcidWork1, orcidWork2, orcidWork3 })));
    orcidProfile.setOrcidWorks(orcidWorks);
    orcidProfile.setOrcidBio(orcidBio);
    return orcidProfile;
}

Example 30 with OrcidBio

use of org.orcid.jaxb.model.message.OrcidBio in project ORCID-Source by ORCID.

the class AddDelegateForm method getOrcidProfile.

public OrcidProfile getOrcidProfile(String orcid) {
    OrcidProfile orcidProfile = new OrcidProfile();
    orcidProfile.setOrcidIdentifier(orcid);
    OrcidBio orcidBio = new OrcidBio();
    orcidProfile.setOrcidBio(orcidBio);
    Delegation delegation = new Delegation();
    orcidBio.setDelegation(delegation);
    GivenPermissionTo givenPermissionTo = new GivenPermissionTo();
    delegation.setGivenPermissionTo(givenPermissionTo);
    DelegationDetails delegationDetails = new DelegationDetails();
    givenPermissionTo.getDelegationDetails().add(delegationDetails);
    DelegateSummary delegateSummary = new DelegateSummary(new OrcidIdentifier(delegateOrcid));
    delegationDetails.setDelegateSummary(delegateSummary);
    return orcidProfile;
}