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Example 31 with OrcidBio

use of org.orcid.jaxb.model.message.OrcidBio in project ORCID-Source by ORCID.

the class OrcidJaxbCopyManagerTest method testUpdatedKeywordsPreservingVisibility.

@Test
public void testUpdatedKeywordsPreservingVisibility() throws Exception {
    OrcidBio existingOrcidBioProtected = protectedOrcidMessage.getOrcidProfile().getOrcidBio();
    OrcidBio updatedOrcidBioPublic = publicOrcidMessage.getOrcidProfile().getOrcidBio();
    Keywords existingKeywords = existingOrcidBioProtected.getKeywords();
    Keywords updatedKeywords = updatedOrcidBioPublic.getKeywords();
    // set keywords to limited on existing and null on updated
    // -should remain as limited and not 'downgrade'
    // -should remain as limited and not 'downgrade'
    assertEquals("Bilocation", existingKeywords.getKeyword().get(0).getContent());
    assertEquals("Pavement Studies", updatedKeywords.getKeyword().get(0).getContent());
    assertEquals(Visibility.PUBLIC, existingKeywords.getVisibility());
    assertNull(updatedKeywords.getVisibility());
    orcidJaxbCopyManager.copyUpdatedBioToExistingWithVisibility(existingOrcidBioProtected, updatedOrcidBioPublic);
    existingKeywords = existingOrcidBioProtected.getKeywords();
    assertEquals("Pavement Studies", existingKeywords.getKeyword().get(0).getContent());
    assertEquals(Visibility.PUBLIC, existingKeywords.getVisibility());
    assertEquals("Pavement Studies", existingKeywords.getKeyword().get(0).getContent());
    updatedKeywords.getKeyword().get(0).setContent("Toast Studies");
    updatedKeywords.setVisibility(Visibility.LIMITED);
    orcidJaxbCopyManager.copyUpdatedBioToExistingWithVisibility(existingOrcidBioProtected, updatedOrcidBioPublic);
    assertEquals("Toast Studies", existingKeywords.getKeyword().get(0).getContent());
    assertEquals(Visibility.LIMITED, existingKeywords.getVisibility());
}
Also used : Keywords(org.orcid.jaxb.model.message.Keywords) OrcidBio(org.orcid.jaxb.model.message.OrcidBio) Test(org.junit.Test) BaseTest(org.orcid.core.BaseTest)

Example 32 with OrcidBio

use of org.orcid.jaxb.model.message.OrcidBio in project ORCID-Source by ORCID.

the class OrcidProfileToSolrDocument method convert.

@Deprecated
public OrcidSolrDocument convert(OrcidProfile profile) {
    // Check if the profile is locked
    if (profile.isLocked()) {
        profile.downgradeToOrcidIdentifierOnly();
    }
    OrcidSolrDocument profileIndexDocument = new OrcidSolrDocument();
    profileIndexDocument.setOrcid(profile.getOrcidIdentifier().getPath());
    OrcidDeprecated orcidDeprecated = profile.getOrcidDeprecated();
    if (orcidDeprecated != null) {
        profileIndexDocument.setPrimaryRecord(orcidDeprecated.getPrimaryRecord() != null ? orcidDeprecated.getPrimaryRecord().getOrcidIdentifier().getPath() : null);
    }
    OrcidBio orcidBio = profile.getOrcidBio();
    if (orcidBio != null) {
        PersonalDetails personalDetails = orcidBio.getPersonalDetails();
        boolean persistPersonalDetails = personalDetails != null;
        if (persistPersonalDetails) {
            profileIndexDocument.setFamilyName(personalDetails.getFamilyName() != null ? personalDetails.getFamilyName().getContent() : null);
            profileIndexDocument.setGivenNames(personalDetails.getGivenNames() != null ? personalDetails.getGivenNames().getContent() : null);
            profileIndexDocument.setCreditName(personalDetails.getCreditName() != null ? personalDetails.getCreditName().getContent() : null);
            List<OtherName> otherNames = personalDetails.getOtherNames() != null ? personalDetails.getOtherNames().getOtherName() : null;
            if (otherNames != null && !otherNames.isEmpty()) {
                List<String> names = new ArrayList<String>();
                for (OtherName otherName : otherNames) {
                    names.add(otherName.getContent());
                }
                profileIndexDocument.setOtherNames(names);
            }
        }
        ContactDetails contactDetails = orcidBio.getContactDetails();
        if (contactDetails != null) {
            for (Email email : contactDetails.getEmail()) {
                profileIndexDocument.addEmailAddress(email.getValue());
            }
        }
        ExternalIdentifiers externalIdentifiers = orcidBio.getExternalIdentifiers();
        if (externalIdentifiers != null) {
            List<String> extIdOrcids = new ArrayList<String>();
            List<String> extIdRefs = new ArrayList<String>();
            List<String> extIdOrcidsAndRefs = new ArrayList<String>();
            for (ExternalIdentifier externalIdentifier : externalIdentifiers.getExternalIdentifier()) {
                Source source = externalIdentifier.getSource();
                String sourcePath = null;
                if (source != null) {
                    sourcePath = source.retrieveSourcePath();
                    if (sourcePath != null) {
                        extIdOrcids.add(sourcePath);
                    }
                }
                ExternalIdReference externalIdReference = externalIdentifier.getExternalIdReference();
                if (externalIdReference != null) {
                    extIdRefs.add(externalIdReference.getContent());
                }
                if (NullUtils.noneNull(sourcePath, externalIdReference)) {
                    extIdOrcidsAndRefs.add(sourcePath + "=" + externalIdReference.getContent());
                }
            }
            if (!extIdOrcids.isEmpty()) {
                profileIndexDocument.setExternalIdSources(extIdOrcids);
            }
            if (!extIdRefs.isEmpty()) {
                profileIndexDocument.setExternalIdReferences(extIdRefs);
            }
            if (!extIdOrcidsAndRefs.isEmpty()) {
                profileIndexDocument.setExternalIdSourcesAndReferences(extIdOrcidsAndRefs);
            }
        }
        OrcidActivities orcidActivities = profile.getOrcidActivities();
        if (orcidActivities != null) {
            if (orcidBio != null && orcidBio.getKeywords() != null) {
                List<Keyword> keyWords = orcidBio.getKeywords().getKeyword();
                if (keyWords != null && keyWords.size() > 0) {
                    List<String> keywordValues = new ArrayList<String>();
                    for (Keyword keyword : keyWords) {
                        keywordValues.add(keyword.getContent());
                    }
                    profileIndexDocument.setKeywords(keywordValues);
                }
            }
        }
        List<OrcidWork> orcidWorks = profile.retrieveOrcidWorks() != null ? profile.retrieveOrcidWorks().getOrcidWork() : null;
        if (orcidWorks != null) {
            List<String> workTitles = new ArrayList<String>();
            Map<WorkExternalIdentifierType, List<String>> allExternalIdentifiers = new HashMap<WorkExternalIdentifierType, List<String>>();
            for (OrcidWork orcidWork : orcidWorks) {
                if (orcidWork.getWorkExternalIdentifiers() != null) {
                    for (WorkExternalIdentifier workExternalIdentifier : orcidWork.getWorkExternalIdentifiers().getWorkExternalIdentifier()) {
                        /**
                             * Creates a map that contains all different
                             * external identifiers for the current work
                             */
                        boolean nullSafeCheckForWorkExternalIdentifier = workExternalIdentifier.getWorkExternalIdentifierId() != null && !StringUtils.isBlank(workExternalIdentifier.getWorkExternalIdentifierId().getContent());
                        if (nullSafeCheckForWorkExternalIdentifier) {
                            WorkExternalIdentifierType type = workExternalIdentifier.getWorkExternalIdentifierType();
                            if (!allExternalIdentifiers.containsKey(type)) {
                                List<String> content = new ArrayList<String>();
                                content.add(workExternalIdentifier.getWorkExternalIdentifierId().getContent());
                                allExternalIdentifiers.put(type, content);
                            } else {
                                allExternalIdentifiers.get(type).add(workExternalIdentifier.getWorkExternalIdentifierId().getContent());
                            }
                        }
                    }
                }
                if (orcidWork.getWorkTitle() != null) {
                    Title workMainTitle = orcidWork.getWorkTitle().getTitle();
                    Subtitle worksubTitle = orcidWork.getWorkTitle().getSubtitle();
                    TranslatedTitle translatedTitle = orcidWork.getWorkTitle().getTranslatedTitle();
                    if (workMainTitle != null && !StringUtils.isBlank(workMainTitle.getContent())) {
                        workTitles.add(workMainTitle.getContent());
                    }
                    if (worksubTitle != null && !StringUtils.isBlank(worksubTitle.getContent())) {
                        workTitles.add(worksubTitle.getContent());
                    }
                    if (translatedTitle != null && !StringUtils.isBlank(translatedTitle.getContent())) {
                        workTitles.add(translatedTitle.getContent());
                    }
                }
            }
            profileIndexDocument.setWorkTitles(workTitles);
            // Set the list of external identifiers to the document list
            addExternalIdentifiersToIndexDocument(profileIndexDocument, allExternalIdentifiers);
        }
        List<Funding> orcidFundings = profile.retrieveFundings() != null ? profile.retrieveFundings().getFundings() : null;
        if (orcidFundings != null) {
            List<String> fundingTitle = new ArrayList<String>();
            for (Funding orcidFunding : orcidFundings) {
                FundingTitle title = orcidFunding.getTitle();
                if (title != null) {
                    if (title.getTitle() != null && !StringUtils.isBlank(title.getTitle().getContent())) {
                        fundingTitle.add(title.getTitle().getContent());
                    }
                    if (title.getTranslatedTitle() != null && StringUtils.isBlank(title.getTranslatedTitle().getContent())) {
                        fundingTitle.add(title.getTranslatedTitle().getContent());
                    }
                }
            }
            profileIndexDocument.setFundingTitles(fundingTitle);
        }
    }
    OrcidMessage orcidMessage = new OrcidMessage();
    orcidMessage.setMessageVersion(OrcidMessage.DEFAULT_VERSION);
    orcidMessage.setOrcidProfile(profile);
    OrcidHistory orcidHistory = profile.getOrcidHistory();
    if (orcidHistory != null) {
        LastModifiedDate lastModifiedDate = orcidHistory.getLastModifiedDate();
        if (lastModifiedDate != null) {
            profileIndexDocument.setProfileLastModifiedDate(lastModifiedDate.getValue().toGregorianCalendar().getTime());
        }
        SubmissionDate submissionDate = orcidHistory.getSubmissionDate();
        if (submissionDate != null) {
            profileIndexDocument.setProfileSubmissionDate(submissionDate.getValue().toGregorianCalendar().getTime());
        }
    }
    return profileIndexDocument;
}
Also used : LastModifiedDate(org.orcid.jaxb.model.message.LastModifiedDate) Email(org.orcid.jaxb.model.message.Email) OrcidBio(org.orcid.jaxb.model.message.OrcidBio) HashMap(java.util.HashMap) Funding(org.orcid.jaxb.model.message.Funding) ArrayList(java.util.ArrayList) OrcidWork(org.orcid.jaxb.model.message.OrcidWork) SubmissionDate(org.orcid.jaxb.model.message.SubmissionDate) Source(org.orcid.jaxb.model.message.Source) ContactDetails(org.orcid.jaxb.model.message.ContactDetails) OrcidSolrDocument(org.orcid.utils.solr.entities.OrcidSolrDocument) OrcidMessage(org.orcid.jaxb.model.message.OrcidMessage) ArrayList(java.util.ArrayList) List(java.util.List) ExternalIdentifiers(org.orcid.jaxb.model.message.ExternalIdentifiers) WorkExternalIdentifierType(org.orcid.jaxb.model.message.WorkExternalIdentifierType) ExternalIdReference(org.orcid.jaxb.model.message.ExternalIdReference) Keyword(org.orcid.jaxb.model.message.Keyword) WorkExternalIdentifier(org.orcid.jaxb.model.message.WorkExternalIdentifier) ExternalIdentifier(org.orcid.jaxb.model.message.ExternalIdentifier) OtherName(org.orcid.jaxb.model.message.OtherName) Title(org.orcid.jaxb.model.message.Title) FundingTitle(org.orcid.jaxb.model.message.FundingTitle) TranslatedTitle(org.orcid.jaxb.model.message.TranslatedTitle) PersonalDetails(org.orcid.jaxb.model.message.PersonalDetails) OrcidActivities(org.orcid.jaxb.model.message.OrcidActivities) Subtitle(org.orcid.jaxb.model.message.Subtitle) OrcidDeprecated(org.orcid.jaxb.model.message.OrcidDeprecated) TranslatedTitle(org.orcid.jaxb.model.message.TranslatedTitle) OrcidHistory(org.orcid.jaxb.model.message.OrcidHistory) WorkExternalIdentifier(org.orcid.jaxb.model.message.WorkExternalIdentifier) FundingTitle(org.orcid.jaxb.model.message.FundingTitle) OrcidDeprecated(org.orcid.jaxb.model.message.OrcidDeprecated)

Example 33 with OrcidBio

use of org.orcid.jaxb.model.message.OrcidBio in project ORCID-Source by ORCID.

the class OrcidIndexManagerImpl method persistProfileInformationForIndexing.

@Override
@Deprecated
public void persistProfileInformationForIndexing(OrcidProfile orcidProfile) {
    // Check if the profile is locked
    if (orcidProfile.isLocked()) {
        orcidProfile.downgradeToOrcidIdentifierOnly();
    }
    OrcidMessage messageToFilter = new OrcidMessage();
    messageToFilter.setOrcidProfile(orcidProfile);
    OrcidMessage filteredMessage = visibilityFilter.filter(messageToFilter, Visibility.PUBLIC);
    OrcidProfile filteredProfile = filteredMessage.getOrcidProfile();
    OrcidSolrDocument profileIndexDocument = new OrcidSolrDocument();
    profileIndexDocument.setOrcid(filteredProfile.getOrcidIdentifier().getPath());
    OrcidDeprecated orcidDeprecated = filteredProfile.getOrcidDeprecated();
    if (orcidDeprecated != null) {
        profileIndexDocument.setPrimaryRecord(orcidDeprecated.getPrimaryRecord() != null ? orcidDeprecated.getPrimaryRecord().getOrcidIdentifier().getPath() : null);
    }
    OrcidBio orcidBio = filteredProfile.getOrcidBio();
    if (orcidBio != null) {
        PersonalDetails personalDetails = orcidBio.getPersonalDetails();
        boolean persistPersonalDetails = personalDetails != null;
        if (persistPersonalDetails) {
            profileIndexDocument.setFamilyName(personalDetails.getFamilyName() != null ? personalDetails.getFamilyName().getContent() : null);
            profileIndexDocument.setGivenNames(personalDetails.getGivenNames() != null ? personalDetails.getGivenNames().getContent() : null);
            profileIndexDocument.setCreditName(personalDetails.getCreditName() != null ? personalDetails.getCreditName().getContent() : null);
            List<OtherName> otherNames = personalDetails.getOtherNames() != null ? personalDetails.getOtherNames().getOtherName() : null;
            if (otherNames != null && !otherNames.isEmpty()) {
                List<String> names = new ArrayList<String>();
                for (OtherName otherName : otherNames) {
                    names.add(otherName.getContent());
                }
                profileIndexDocument.setOtherNames(names);
            }
        }
        ContactDetails contactDetails = orcidBio.getContactDetails();
        if (contactDetails != null) {
            for (Email email : contactDetails.getEmail()) {
                profileIndexDocument.addEmailAddress(email.getValue());
            }
        }
        ExternalIdentifiers externalIdentifiers = orcidBio.getExternalIdentifiers();
        if (externalIdentifiers != null) {
            List<String> extIdOrcids = new ArrayList<String>();
            List<String> extIdRefs = new ArrayList<String>();
            List<String> extIdOrcidsAndRefs = new ArrayList<String>();
            for (ExternalIdentifier externalIdentifier : externalIdentifiers.getExternalIdentifier()) {
                Source source = externalIdentifier.getSource();
                String sourcePath = null;
                if (source != null) {
                    sourcePath = source.retrieveSourcePath();
                    if (sourcePath != null) {
                        extIdOrcids.add(sourcePath);
                    }
                }
                ExternalIdReference externalIdReference = externalIdentifier.getExternalIdReference();
                if (externalIdReference != null) {
                    extIdRefs.add(externalIdReference.getContent());
                }
                if (NullUtils.noneNull(sourcePath, externalIdReference)) {
                    extIdOrcidsAndRefs.add(sourcePath + "=" + externalIdReference.getContent());
                }
            }
            if (!extIdOrcids.isEmpty()) {
                profileIndexDocument.setExternalIdSources(extIdOrcids);
            }
            if (!extIdRefs.isEmpty()) {
                profileIndexDocument.setExternalIdReferences(extIdRefs);
            }
            if (!extIdOrcidsAndRefs.isEmpty()) {
                profileIndexDocument.setExternalIdSourcesAndReferences(extIdOrcidsAndRefs);
            }
        }
        OrcidActivities orcidActivities = filteredProfile.getOrcidActivities();
        if (orcidActivities != null) {
            // Affiliations affiliations =
            // orcidActivities.getAffiliations();
            // if (affiliations != null) {
            // List<Affiliation> pastInsts = affiliations
            // .getAffiliationsByType(AffiliationType.PAST_INSTITUTION);
            // if (pastInsts != null && !pastInsts.isEmpty()) {
            // List<String> pastInstNames = new ArrayList<String>();
            // for (Affiliation pastAffiliation : pastInsts) {
            // pastInstNames.add(pastAffiliation
            // .getAffiliationName());
            // }
            //
            // profileIndexDocument
            // .setAffiliatePastInstitutionNames(pastInstNames);
            // }
            //
            // List<Affiliation> primaryInsts = affiliations
            // .getAffiliationsByType(AffiliationType.CURRENT_PRIMARY_INSTITUTION);
            // if (primaryInsts != null && !primaryInsts.isEmpty()) {
            // List<String> primaryInstNames = new ArrayList<String>();
            // for (Affiliation primaryAffiliation : primaryInsts) {
            // primaryInstNames.add(primaryAffiliation
            // .getAffiliationName());
            // }
            //
            // profileIndexDocument
            // .setAffiliatePrimaryInstitutionNames(primaryInstNames);
            // }
            //
            // List<Affiliation> currentNonPrimaryInsts = affiliations
            // .getAffiliationsByType(AffiliationType.CURRENT_INSTITUTION);
            // if (currentNonPrimaryInsts != null
            // && !currentNonPrimaryInsts.isEmpty()) {
            // List<String> affiliateInstNames = new ArrayList<String>();
            // for (Affiliation currentAffiliation : currentNonPrimaryInsts)
            // {
            // affiliateInstNames.add(currentAffiliation
            // .getAffiliationName());
            // }
            //
            // profileIndexDocument
            // .setAffiliateInstitutionNames(affiliateInstNames);
            // }
            // }
            List<String> keywords = extractKeywordsAsStringFromBio(orcidBio);
            if (keywords != null) {
                profileIndexDocument.setKeywords(keywords);
            }
        }
        List<OrcidWork> orcidWorks = filteredProfile.retrieveOrcidWorks() != null ? filteredProfile.retrieveOrcidWorks().getOrcidWork() : null;
        if (orcidWorks != null) {
            List<String> workTitles = new ArrayList<String>();
            Map<WorkExternalIdentifierType, List<String>> allExternalIdentifiers = new HashMap<WorkExternalIdentifierType, List<String>>();
            for (OrcidWork orcidWork : orcidWorks) {
                if (orcidWork.getWorkExternalIdentifiers() != null) {
                    for (WorkExternalIdentifier workExternalIdentifier : orcidWork.getWorkExternalIdentifiers().getWorkExternalIdentifier()) {
                        /**
                             * Creates a map that contains all different
                             * external identifiers for the current work
                             * */
                        if (nullSafeCheckForWorkExternalIdentifier(workExternalIdentifier)) {
                            WorkExternalIdentifierType type = workExternalIdentifier.getWorkExternalIdentifierType();
                            if (!allExternalIdentifiers.containsKey(type)) {
                                List<String> content = new ArrayList<String>();
                                content.add(workExternalIdentifier.getWorkExternalIdentifierId().getContent());
                                allExternalIdentifiers.put(type, content);
                            } else {
                                allExternalIdentifiers.get(type).add(workExternalIdentifier.getWorkExternalIdentifierId().getContent());
                            }
                        }
                    }
                }
                if (orcidWork.getWorkTitle() != null) {
                    Title workMainTitle = orcidWork.getWorkTitle().getTitle();
                    Subtitle worksubTitle = orcidWork.getWorkTitle().getSubtitle();
                    TranslatedTitle translatedTitle = orcidWork.getWorkTitle().getTranslatedTitle();
                    if (workMainTitle != null && !StringUtils.isBlank(workMainTitle.getContent())) {
                        workTitles.add(workMainTitle.getContent());
                    }
                    if (worksubTitle != null && !StringUtils.isBlank(worksubTitle.getContent())) {
                        workTitles.add(worksubTitle.getContent());
                    }
                    if (translatedTitle != null && !StringUtils.isBlank(translatedTitle.getContent())) {
                        workTitles.add(translatedTitle.getContent());
                    }
                }
            }
            profileIndexDocument.setWorkTitles(workTitles);
            // Set the list of external identifiers to the document list
            addExternalIdentifiersToIndexDocument(profileIndexDocument, allExternalIdentifiers);
        }
        List<Funding> orcidFundings = filteredProfile.retrieveFundings() != null ? filteredProfile.retrieveFundings().getFundings() : null;
        if (orcidFundings != null) {
            List<String> fundingTitle = new ArrayList<String>();
            for (Funding orcidFunding : orcidFundings) {
                FundingTitle title = orcidFunding.getTitle();
                if (title != null) {
                    if (title.getTitle() != null && !StringUtils.isBlank(title.getTitle().getContent())) {
                        fundingTitle.add(title.getTitle().getContent());
                    }
                    if (title.getTranslatedTitle() != null && StringUtils.isBlank(title.getTranslatedTitle().getContent())) {
                        fundingTitle.add(title.getTranslatedTitle().getContent());
                    }
                }
            }
            profileIndexDocument.setFundingTitles(fundingTitle);
        }
    }
    OrcidMessage orcidMessage = new OrcidMessage();
    orcidMessage.setMessageVersion(OrcidMessage.DEFAULT_VERSION);
    orcidMessage.setOrcidProfile(filteredProfile);
    OrcidHistory orcidHistory = filteredProfile.getOrcidHistory();
    if (orcidHistory != null) {
        LastModifiedDate lastModifiedDate = orcidHistory.getLastModifiedDate();
        if (lastModifiedDate != null) {
            profileIndexDocument.setProfileLastModifiedDate(lastModifiedDate.getValue().toGregorianCalendar().getTime());
        }
        SubmissionDate submissionDate = orcidHistory.getSubmissionDate();
        if (submissionDate != null) {
            profileIndexDocument.setProfileSubmissionDate(submissionDate.getValue().toGregorianCalendar().getTime());
        }
    }
    if (indexPublicProfile) {
        profileIndexDocument.setPublicProfileMessage(orcidMessage.toXmlString());
    }
    solrDao.persist(profileIndexDocument);
}
Also used : LastModifiedDate(org.orcid.jaxb.model.message.LastModifiedDate) Email(org.orcid.jaxb.model.message.Email) OrcidBio(org.orcid.jaxb.model.message.OrcidBio) HashMap(java.util.HashMap) Funding(org.orcid.jaxb.model.message.Funding) ArrayList(java.util.ArrayList) OrcidWork(org.orcid.jaxb.model.message.OrcidWork) SubmissionDate(org.orcid.jaxb.model.message.SubmissionDate) Source(org.orcid.jaxb.model.message.Source) OrcidProfile(org.orcid.jaxb.model.message.OrcidProfile) ContactDetails(org.orcid.jaxb.model.message.ContactDetails) OrcidMessage(org.orcid.jaxb.model.message.OrcidMessage) OrcidSolrDocument(org.orcid.utils.solr.entities.OrcidSolrDocument) ArrayList(java.util.ArrayList) List(java.util.List) ExternalIdentifiers(org.orcid.jaxb.model.message.ExternalIdentifiers) WorkExternalIdentifierType(org.orcid.jaxb.model.message.WorkExternalIdentifierType) ExternalIdReference(org.orcid.jaxb.model.message.ExternalIdReference) WorkExternalIdentifier(org.orcid.jaxb.model.message.WorkExternalIdentifier) ExternalIdentifier(org.orcid.jaxb.model.message.ExternalIdentifier) OtherName(org.orcid.jaxb.model.message.OtherName) Title(org.orcid.jaxb.model.message.Title) FundingTitle(org.orcid.jaxb.model.message.FundingTitle) TranslatedTitle(org.orcid.jaxb.model.message.TranslatedTitle) PersonalDetails(org.orcid.jaxb.model.message.PersonalDetails) OrcidActivities(org.orcid.jaxb.model.message.OrcidActivities) Subtitle(org.orcid.jaxb.model.message.Subtitle) OrcidDeprecated(org.orcid.jaxb.model.message.OrcidDeprecated) TranslatedTitle(org.orcid.jaxb.model.message.TranslatedTitle) OrcidHistory(org.orcid.jaxb.model.message.OrcidHistory) WorkExternalIdentifier(org.orcid.jaxb.model.message.WorkExternalIdentifier) FundingTitle(org.orcid.jaxb.model.message.FundingTitle) OrcidDeprecated(org.orcid.jaxb.model.message.OrcidDeprecated)

Example 34 with OrcidBio

use of org.orcid.jaxb.model.message.OrcidBio in project ORCID-Source by ORCID.

the class OrcidClientGroupManagerImpl method createGroupProfile.

private OrcidProfile createGroupProfile(OrcidClientGroup orcidClientGroup) {
    OrcidProfile orcidProfile = new OrcidProfile();
    orcidProfile.setType(OrcidType.GROUP);
    orcidProfile.setGroupType(orcidClientGroup.getType());
    OrcidHistory orcidHistory = new OrcidHistory();
    orcidProfile.setOrcidHistory(orcidHistory);
    orcidHistory.setClaimed(new Claimed(true));
    orcidHistory.setSubmissionDate(new SubmissionDate(DateUtils.convertToXMLGregorianCalendar(new Date())));
    OrcidBio orcidBio = new OrcidBio();
    orcidProfile.setOrcidBio(orcidBio);
    PersonalDetails personalDetails = new PersonalDetails();
    orcidBio.setPersonalDetails(personalDetails);
    personalDetails.setCreditName(new CreditName(orcidClientGroup.getGroupName()));
    ContactDetails contactDetails = new ContactDetails();
    orcidBio.setContactDetails(contactDetails);
    Email primaryEmail = new Email(orcidClientGroup.getEmail());
    primaryEmail.setVisibility(Visibility.PRIVATE);
    primaryEmail.setVerified(true);
    contactDetails.addOrReplacePrimaryEmail(primaryEmail);
    if (!PojoUtil.isEmpty(orcidClientGroup.getSalesforceId())) {
        OrcidInternal orcidInternal = new OrcidInternal();
        orcidInternal.setSalesforceId(new SalesforceId(orcidClientGroup.getSalesforceId()));
        orcidProfile.setOrcidInternal(orcidInternal);
    }
    return orcidProfile;
}
Also used : OrcidProfile(org.orcid.jaxb.model.message.OrcidProfile) Email(org.orcid.jaxb.model.message.Email) OrcidBio(org.orcid.jaxb.model.message.OrcidBio) ContactDetails(org.orcid.jaxb.model.message.ContactDetails) OrcidHistory(org.orcid.jaxb.model.message.OrcidHistory) SalesforceId(org.orcid.jaxb.model.message.SalesforceId) CreditName(org.orcid.jaxb.model.message.CreditName) OrcidInternal(org.orcid.jaxb.model.message.OrcidInternal) SubmissionDate(org.orcid.jaxb.model.message.SubmissionDate) PersonalDetails(org.orcid.jaxb.model.message.PersonalDetails) Claimed(org.orcid.jaxb.model.message.Claimed) Date(java.util.Date) SubmissionDate(org.orcid.jaxb.model.message.SubmissionDate)

Example 35 with OrcidBio

use of org.orcid.jaxb.model.message.OrcidBio in project ORCID-Source by ORCID.

the class OrcidProfileManagerImplTest method before.

@Before
@Transactional
@Rollback
public void before() throws Exception {
    OrcidProfileManagerImpl orcidProfileManagerImpl = getTargetObject(orcidProfileManager, OrcidProfileManagerImpl.class);
    orcidProfileManagerImpl.setNotificationManager(notificationManager);
    if (profileDao.find(TEST_ORCID) != null) {
        profileDao.remove(TEST_ORCID);
    }
    subjectDao.merge(new SubjectEntity("Computer Science"));
    subjectDao.merge(new SubjectEntity("Dance"));
    OrcidProfile delegateProfile = new OrcidProfile();
    delegateProfile.setOrcidIdentifier(DELEGATE_ORCID);
    OrcidBio delegateBio = new OrcidBio();
    delegateProfile.setOrcidBio(delegateBio);
    PersonalDetails delegatePersonalDetails = new PersonalDetails();
    delegateBio.setPersonalDetails(delegatePersonalDetails);
    CreditName delegateCreditName = new CreditName("H. Shearer");
    delegateCreditName.setVisibility(Visibility.PUBLIC);
    delegatePersonalDetails.setCreditName(delegateCreditName);
    orcidProfileManager.createOrcidProfile(delegateProfile, false, false);
    OrcidProfile applicationProfile = new OrcidProfile();
    applicationProfile.setOrcidIdentifier(APPLICATION_ORCID);
    OrcidBio applicationBio = new OrcidBio();
    applicationProfile.setOrcidBio(applicationBio);
    PersonalDetails applicationPersonalDetails = new PersonalDetails();
    applicationBio.setPersonalDetails(applicationPersonalDetails);
    applicationPersonalDetails.setCreditName(new CreditName("Brown University"));
    orcidProfileManager.createOrcidProfile(applicationProfile, false, false);
    ClientDetailsEntity clientDetails = new ClientDetailsEntity();
    clientDetails.setId(applicationProfile.getOrcidIdentifier().getPath());
    ProfileEntity applicationProfileEntity = profileDao.find(applicationProfile.getOrcidIdentifier().getPath());
    profileDao.refresh(applicationProfileEntity);
    clientDetails.setGroupProfileId(applicationProfileEntity.getId());
    clientDetailsManager.merge(clientDetails);
    OrcidOauth2TokenDetail token = new OrcidOauth2TokenDetail();
    token.setTokenValue("1234");
    token.setClientDetailsId(clientDetails.getId());
    token.setProfile(profileDao.find(delegateProfile.getOrcidIdentifier().getPath()));
    token.setScope(StringUtils.join(new String[] { ScopePathType.ORCID_BIO_READ_LIMITED.value(), ScopePathType.ORCID_BIO_UPDATE.value() }, " "));
    SortedSet<OrcidOauth2TokenDetail> tokens = new TreeSet<>();
    tokens.add(token);
    ProfileEntity delegateProfileEntity = profileDao.find(delegateProfile.getOrcidIdentifier().getPath());
    delegateProfileEntity.setTokenDetails(tokens);
    profileDao.merge(delegateProfileEntity);
    SecurityQuestionEntity existingSecurityQuestionEntity = securityQuestionDao.find(3);
    if (existingSecurityQuestionEntity == null) {
        SecurityQuestionEntity securityQuestionEntity = new SecurityQuestionEntity();
        securityQuestionEntity.setId(3);
        securityQuestionEntity.setQuestion("What?");
        securityQuestionDao.persist(securityQuestionEntity);
    }
    orcidProfileManager.setCompareWorksUsingScopusWay(true);
}
Also used : ClientDetailsEntity(org.orcid.persistence.jpa.entities.ClientDetailsEntity) OrcidBio(org.orcid.jaxb.model.message.OrcidBio) SubjectEntity(org.orcid.persistence.jpa.entities.SubjectEntity) CreditName(org.orcid.jaxb.model.message.CreditName) PersonalDetails(org.orcid.jaxb.model.message.PersonalDetails) ProfileEntity(org.orcid.persistence.jpa.entities.ProfileEntity) SecurityQuestionEntity(org.orcid.persistence.jpa.entities.SecurityQuestionEntity) OrcidProfile(org.orcid.jaxb.model.message.OrcidProfile) OrcidProfileManagerImpl(org.orcid.core.manager.impl.OrcidProfileManagerImpl) TreeSet(java.util.TreeSet) OrcidOauth2TokenDetail(org.orcid.persistence.jpa.entities.OrcidOauth2TokenDetail) Before(org.junit.Before) Rollback(org.springframework.test.annotation.Rollback) Transactional(org.springframework.transaction.annotation.Transactional)

Aggregations

OrcidBio (org.orcid.jaxb.model.message.OrcidBio)56 OrcidProfile (org.orcid.jaxb.model.message.OrcidProfile)38 PersonalDetails (org.orcid.jaxb.model.message.PersonalDetails)28 Test (org.junit.Test)27 ContactDetails (org.orcid.jaxb.model.message.ContactDetails)23 Email (org.orcid.jaxb.model.message.Email)20 GivenNames (org.orcid.jaxb.model.message.GivenNames)20 OrcidMessage (org.orcid.jaxb.model.message.OrcidMessage)19 ExternalIdentifiers (org.orcid.jaxb.model.message.ExternalIdentifiers)16 FamilyName (org.orcid.jaxb.model.message.FamilyName)16 ExternalIdentifier (org.orcid.jaxb.model.message.ExternalIdentifier)15 CreditName (org.orcid.jaxb.model.message.CreditName)14 BaseTest (org.orcid.core.BaseTest)13 ExternalIdReference (org.orcid.jaxb.model.message.ExternalIdReference)11 WorkExternalIdentifier (org.orcid.jaxb.model.message.WorkExternalIdentifier)11 OrcidHistory (org.orcid.jaxb.model.message.OrcidHistory)10 ExternalIdCommonName (org.orcid.jaxb.model.message.ExternalIdCommonName)9 OtherNames (org.orcid.jaxb.model.message.OtherNames)9 Biography (org.orcid.jaxb.model.message.Biography)8 Keyword (org.orcid.jaxb.model.message.Keyword)8