Examples with Title org.orcid.jaxb.model.message.Title used on opensource projects

Example 16 with Title

use of org.orcid.jaxb.model.message.Title in project ORCID-Source by ORCID.

the class OrcidProfileManagerImplTest method testCheckWorkExternalIdentifiersAreNotDuplicated3.

@Test
@Transactional
public void testCheckWorkExternalIdentifiersAreNotDuplicated3() {
    List<OrcidWork> newOrcidWorksList = new ArrayList<OrcidWork>();
    List<OrcidWork> existingWorkList = new ArrayList<OrcidWork>();
    OrcidWork newWork1 = getOrcidWork("work1", false);
    OrcidWork newWork2 = getOrcidWork("work2", false);
    OrcidWork newWork3 = getOrcidWork("work3", false);
    OrcidWork newWork3_fixed = getOrcidWork("work3", false);
    WorkTitle updatedTitle = new WorkTitle();
    updatedTitle.setTitle(new Title("updated title"));
    newWork3_fixed.setWorkTitle(updatedTitle);
    //Check #3: Check duplicates in new works
    newOrcidWorksList.add(newWork1);
    newOrcidWorksList.add(newWork2);
    newOrcidWorksList.add(newWork3);
    newOrcidWorksList.add(newWork3_fixed);
    try {
        orcidProfileManager.checkWorkExternalIdentifiersAreNotDuplicated(newOrcidWorksList, existingWorkList);
        fail();
    } catch (IllegalArgumentException iae) {
        assertEquals("Works \"Title for work3->updated\" and \"updated title\" have the same external id \"doi-work3\"", iae.getMessage());
    }
}

Example 17 with Title

use of org.orcid.jaxb.model.message.Title in project ORCID-Source by ORCID.

the class Api12Helper method addFunding.

protected static void addFunding(String userOrcid, String token, String title, T2OAuthAPIService<ClientResponse> oauthT2Client) {
    OrcidMessage orcidMessage = new OrcidMessage();
    orcidMessage.setMessageVersion(OrcidMessage.DEFAULT_VERSION);
    OrcidProfile orcidProfile = new OrcidProfile();
    orcidMessage.setOrcidProfile(orcidProfile);
    OrcidActivities orcidActivities = new OrcidActivities();
    orcidProfile.setOrcidActivities(orcidActivities);
    FundingList fundings = new FundingList();
    Funding funding = new Funding();
    funding.setVisibility(Visibility.LIMITED);
    FundingTitle fundingTitle = new FundingTitle();
    fundingTitle.setTitle(new Title(title));
    funding.setTitle(fundingTitle);
    funding.setType(FundingType.SALARY_AWARD);
    Amount amount = new Amount();
    amount.setCurrencyCode("CRC");
    amount.setContent("1,250,000");
    funding.setAmount(amount);
    funding.setStartDate(new FuzzyDate(2010, 1, 1));
    funding.setEndDate(new FuzzyDate(2013, 1, 1));
    funding.setDescription("My Grant description");
    funding.setUrl(new Url("http://url.com"));
    Organization org = new Organization();
    org.setName("Orcid Integration Test Org");
    OrganizationAddress add = new OrganizationAddress();
    add.setCity("My City");
    add.setCountry(Iso3166Country.CR);
    org.setAddress(add);
    funding.setOrganization(org);
    FundingExternalIdentifier extIdentifier = new FundingExternalIdentifier();
    extIdentifier.setType(FundingExternalIdentifierType.fromValue("grant_number"));
    extIdentifier.setUrl(new Url("http://url.com"));
    extIdentifier.setValue("My value");
    FundingExternalIdentifiers extIdentifiers = new FundingExternalIdentifiers();
    extIdentifiers.getFundingExternalIdentifier().add(extIdentifier);
    funding.setFundingExternalIdentifiers(extIdentifiers);
    FundingContributors contributors = new FundingContributors();
    FundingContributor contributor = new FundingContributor();
    contributor.setCreditName(new CreditName("My Credit Name"));
    contributor.setContributorEmail(new ContributorEmail("my.email@orcid-integration-test.com"));
    FundingContributorAttributes attributes = new FundingContributorAttributes();
    attributes.setContributorRole(FundingContributorRole.LEAD);
    contributor.setContributorAttributes(attributes);
    contributors.getContributor().add(contributor);
    funding.setFundingContributors(contributors);
    fundings.getFundings().add(funding);
    orcidMessage.getOrcidProfile().getOrcidActivities().setFundings(fundings);
    ClientResponse clientResponse = oauthT2Client.addFundingXml(userOrcid, orcidMessage, token);
    assertEquals(201, clientResponse.getStatus());
}

Example 18 with Title

use of org.orcid.jaxb.model.message.Title in project ORCID-Source by ORCID.

the class Api12Helper method addWork.

protected static void addWork(String userOrcid, String token, String title, T2OAuthAPIService<ClientResponse> oauthT2Client) {
    String id = String.valueOf(System.currentTimeMillis());
    OrcidMessage orcidMessage = new OrcidMessage();
    orcidMessage.setMessageVersion(OrcidMessage.DEFAULT_VERSION);
    OrcidProfile orcidProfile = new OrcidProfile();
    orcidMessage.setOrcidProfile(orcidProfile);
    OrcidActivities orcidActivities = new OrcidActivities();
    orcidProfile.setOrcidActivities(orcidActivities);
    OrcidWorks orcidWorks = new OrcidWorks();
    orcidActivities.setOrcidWorks(orcidWorks);
    OrcidWork orcidWork = new OrcidWork();
    orcidWorks.getOrcidWork().add(orcidWork);
    orcidWork.setWorkType(WorkType.JOURNAL_ARTICLE);
    orcidWork.setVisibility(Visibility.LIMITED);
    WorkTitle workTitle = new WorkTitle();
    orcidWork.setWorkTitle(workTitle);
    WorkExternalIdentifier wei = new WorkExternalIdentifier();
    wei.setWorkExternalIdentifierId(new WorkExternalIdentifierId(id));
    wei.setWorkExternalIdentifierType(WorkExternalIdentifierType.DOI);
    WorkExternalIdentifiers extIds = new WorkExternalIdentifiers();
    extIds.getWorkExternalIdentifier().add(wei);
    orcidWork.setWorkExternalIdentifiers(extIds);
    workTitle.setTitle(new Title(title));
    ClientResponse clientResponse = oauthT2Client.addWorksXml(userOrcid, orcidMessage, token);
    assertEquals(201, clientResponse.getStatus());
}

Example 19 with Title

use of org.orcid.jaxb.model.message.Title in project ORCID-Source by ORCID.

the class OrcidProfileToSolrDocument method convert.

@Deprecated
public OrcidSolrDocument convert(OrcidProfile profile) {
    // Check if the profile is locked
    if (profile.isLocked()) {
        profile.downgradeToOrcidIdentifierOnly();
    }
    OrcidSolrDocument profileIndexDocument = new OrcidSolrDocument();
    profileIndexDocument.setOrcid(profile.getOrcidIdentifier().getPath());
    OrcidDeprecated orcidDeprecated = profile.getOrcidDeprecated();
    if (orcidDeprecated != null) {
        profileIndexDocument.setPrimaryRecord(orcidDeprecated.getPrimaryRecord() != null ? orcidDeprecated.getPrimaryRecord().getOrcidIdentifier().getPath() : null);
    }
    OrcidBio orcidBio = profile.getOrcidBio();
    if (orcidBio != null) {
        PersonalDetails personalDetails = orcidBio.getPersonalDetails();
        boolean persistPersonalDetails = personalDetails != null;
        if (persistPersonalDetails) {
            profileIndexDocument.setFamilyName(personalDetails.getFamilyName() != null ? personalDetails.getFamilyName().getContent() : null);
            profileIndexDocument.setGivenNames(personalDetails.getGivenNames() != null ? personalDetails.getGivenNames().getContent() : null);
            profileIndexDocument.setCreditName(personalDetails.getCreditName() != null ? personalDetails.getCreditName().getContent() : null);
            List<OtherName> otherNames = personalDetails.getOtherNames() != null ? personalDetails.getOtherNames().getOtherName() : null;
            if (otherNames != null && !otherNames.isEmpty()) {
                List<String> names = new ArrayList<String>();
                for (OtherName otherName : otherNames) {
                    names.add(otherName.getContent());
                }
                profileIndexDocument.setOtherNames(names);
            }
        }
        ContactDetails contactDetails = orcidBio.getContactDetails();
        if (contactDetails != null) {
            for (Email email : contactDetails.getEmail()) {
                profileIndexDocument.addEmailAddress(email.getValue());
            }
        }
        ExternalIdentifiers externalIdentifiers = orcidBio.getExternalIdentifiers();
        if (externalIdentifiers != null) {
            List<String> extIdOrcids = new ArrayList<String>();
            List<String> extIdRefs = new ArrayList<String>();
            List<String> extIdOrcidsAndRefs = new ArrayList<String>();
            for (ExternalIdentifier externalIdentifier : externalIdentifiers.getExternalIdentifier()) {
                Source source = externalIdentifier.getSource();
                String sourcePath = null;
                if (source != null) {
                    sourcePath = source.retrieveSourcePath();
                    if (sourcePath != null) {
                        extIdOrcids.add(sourcePath);
                    }
                }
                ExternalIdReference externalIdReference = externalIdentifier.getExternalIdReference();
                if (externalIdReference != null) {
                    extIdRefs.add(externalIdReference.getContent());
                }
                if (NullUtils.noneNull(sourcePath, externalIdReference)) {
                    extIdOrcidsAndRefs.add(sourcePath + "=" + externalIdReference.getContent());
                }
            }
            if (!extIdOrcids.isEmpty()) {
                profileIndexDocument.setExternalIdSources(extIdOrcids);
            }
            if (!extIdRefs.isEmpty()) {
                profileIndexDocument.setExternalIdReferences(extIdRefs);
            }
            if (!extIdOrcidsAndRefs.isEmpty()) {
                profileIndexDocument.setExternalIdSourcesAndReferences(extIdOrcidsAndRefs);
            }
        }
        OrcidActivities orcidActivities = profile.getOrcidActivities();
        if (orcidActivities != null) {
            if (orcidBio != null && orcidBio.getKeywords() != null) {
                List<Keyword> keyWords = orcidBio.getKeywords().getKeyword();
                if (keyWords != null && keyWords.size() > 0) {
                    List<String> keywordValues = new ArrayList<String>();
                    for (Keyword keyword : keyWords) {
                        keywordValues.add(keyword.getContent());
                    }
                    profileIndexDocument.setKeywords(keywordValues);
                }
            }
        }
        List<OrcidWork> orcidWorks = profile.retrieveOrcidWorks() != null ? profile.retrieveOrcidWorks().getOrcidWork() : null;
        if (orcidWorks != null) {
            List<String> workTitles = new ArrayList<String>();
            Map<WorkExternalIdentifierType, List<String>> allExternalIdentifiers = new HashMap<WorkExternalIdentifierType, List<String>>();
            for (OrcidWork orcidWork : orcidWorks) {
                if (orcidWork.getWorkExternalIdentifiers() != null) {
                    for (WorkExternalIdentifier workExternalIdentifier : orcidWork.getWorkExternalIdentifiers().getWorkExternalIdentifier()) {
                        /**
                             * Creates a map that contains all different
                             * external identifiers for the current work
                             */
                        boolean nullSafeCheckForWorkExternalIdentifier = workExternalIdentifier.getWorkExternalIdentifierId() != null && !StringUtils.isBlank(workExternalIdentifier.getWorkExternalIdentifierId().getContent());
                        if (nullSafeCheckForWorkExternalIdentifier) {
                            WorkExternalIdentifierType type = workExternalIdentifier.getWorkExternalIdentifierType();
                            if (!allExternalIdentifiers.containsKey(type)) {
                                List<String> content = new ArrayList<String>();
                                content.add(workExternalIdentifier.getWorkExternalIdentifierId().getContent());
                                allExternalIdentifiers.put(type, content);
                            } else {
                                allExternalIdentifiers.get(type).add(workExternalIdentifier.getWorkExternalIdentifierId().getContent());
                            }
                        }
                    }
                }
                if (orcidWork.getWorkTitle() != null) {
                    Title workMainTitle = orcidWork.getWorkTitle().getTitle();
                    Subtitle worksubTitle = orcidWork.getWorkTitle().getSubtitle();
                    TranslatedTitle translatedTitle = orcidWork.getWorkTitle().getTranslatedTitle();
                    if (workMainTitle != null && !StringUtils.isBlank(workMainTitle.getContent())) {
                        workTitles.add(workMainTitle.getContent());
                    }
                    if (worksubTitle != null && !StringUtils.isBlank(worksubTitle.getContent())) {
                        workTitles.add(worksubTitle.getContent());
                    }
                    if (translatedTitle != null && !StringUtils.isBlank(translatedTitle.getContent())) {
                        workTitles.add(translatedTitle.getContent());
                    }
                }
            }
            profileIndexDocument.setWorkTitles(workTitles);
            // Set the list of external identifiers to the document list
            addExternalIdentifiersToIndexDocument(profileIndexDocument, allExternalIdentifiers);
        }
        List<Funding> orcidFundings = profile.retrieveFundings() != null ? profile.retrieveFundings().getFundings() : null;
        if (orcidFundings != null) {
            List<String> fundingTitle = new ArrayList<String>();
            for (Funding orcidFunding : orcidFundings) {
                FundingTitle title = orcidFunding.getTitle();
                if (title != null) {
                    if (title.getTitle() != null && !StringUtils.isBlank(title.getTitle().getContent())) {
                        fundingTitle.add(title.getTitle().getContent());
                    }
                    if (title.getTranslatedTitle() != null && StringUtils.isBlank(title.getTranslatedTitle().getContent())) {
                        fundingTitle.add(title.getTranslatedTitle().getContent());
                    }
                }
            }
            profileIndexDocument.setFundingTitles(fundingTitle);
        }
    }
    OrcidMessage orcidMessage = new OrcidMessage();
    orcidMessage.setMessageVersion(OrcidMessage.DEFAULT_VERSION);
    orcidMessage.setOrcidProfile(profile);
    OrcidHistory orcidHistory = profile.getOrcidHistory();
    if (orcidHistory != null) {
        LastModifiedDate lastModifiedDate = orcidHistory.getLastModifiedDate();
        if (lastModifiedDate != null) {
            profileIndexDocument.setProfileLastModifiedDate(lastModifiedDate.getValue().toGregorianCalendar().getTime());
        }
        SubmissionDate submissionDate = orcidHistory.getSubmissionDate();
        if (submissionDate != null) {
            profileIndexDocument.setProfileSubmissionDate(submissionDate.getValue().toGregorianCalendar().getTime());
        }
    }
    return profileIndexDocument;
}

Example 20 with Title

use of org.orcid.jaxb.model.message.Title in project ORCID-Source by ORCID.

the class Publication method getOrcidWork.

public OrcidWork getOrcidWork() {
    initCrossRefContext();
    OrcidWork orcidWork = new OrcidWork();
    if (StringUtils.isNotBlank(doi)) {
        WorkExternalIdentifier doiExtId = new WorkExternalIdentifier();
        doiExtId.setWorkExternalIdentifierType(WorkExternalIdentifierType.DOI);
        doiExtId.setWorkExternalIdentifierId(new WorkExternalIdentifierId(doi));
        WorkExternalIdentifiers workExtIds = new WorkExternalIdentifiers();
        orcidWork.setWorkExternalIdentifiers(workExtIds);
        workExtIds.getWorkExternalIdentifier().add(doiExtId);
    }
    if (StringUtils.isNotBlank(title)) {
        WorkTitle workTitle = new WorkTitle();
        orcidWork.setWorkTitle(workTitle);
        workTitle.setTitle(new Title(title));
    }
    // Will throw an IllegalArgumentException if not valid
    CitationType cType = CitationType.fromValue(citationType);
    Citation citation = new Citation(fullCitation, cType);
    orcidWork.setWorkCitation(citation);
    String publicationDateString = crossRefContext.getDate();
    if (StringUtils.isNotBlank(publicationDateString)) {
        XMLGregorianCalendar publicationDateGregCal = DateUtils.convertToXMLGregorianCalendar(publicationDateString);
        if (publicationDateGregCal != null) {
            Year publicationyear = new Year(publicationDateGregCal.getYear());
            Month publicationMonth = publicationDateGregCal.getMonth() == DatatypeConstants.FIELD_UNDEFINED ? null : new Month(publicationDateGregCal.getMonth());
            Day publicationDay = publicationDateGregCal.getDay() == DatatypeConstants.FIELD_UNDEFINED ? null : new Day(publicationDateGregCal.getDay());
            orcidWork.setPublicationDate(new PublicationDate(publicationyear, publicationMonth, publicationDay));
        }
    }
    String author = crossRefContext.getAuthor();
    if (StringUtils.isNotBlank(author)) {
        WorkContributors workContributors = new WorkContributors();
        orcidWork.setWorkContributors(workContributors);
        Contributor contributor = new Contributor();
        workContributors.getContributor().add(contributor);
        contributor.setCreditName(new CreditName(author));
        ContributorAttributes contributorAttributes = new ContributorAttributes();
        contributor.setContributorAttributes(contributorAttributes);
        contributorAttributes.setContributorRole(ContributorRole.AUTHOR);
        contributorAttributes.setContributorSequence(SequenceType.FIRST);
    }
    return orcidWork;
}