Examples with Activity org.orcid.jaxb.model.v3.dev1.record.Activity used on opensource projects

Example 1 with Activity

use of org.orcid.jaxb.model.v3.dev1.record.Activity in project ORCID-Source by ORCID.

the class PeerReviewManagerReadOnlyImpl method groupPeerReviews.

/**
 * Generate a grouped list of peer reviews with the given list of peer reviews
 *
 * @param peerReviews
 *          The list of peer reviews to group
 * @param justPublic
 *          Specify if we want to group only the public elements in the given list
 * @return PeerReviews element with the PeerReviewSummary elements grouped
 */
@Override
public PeerReviews groupPeerReviews(List<PeerReviewSummary> peerReviews, boolean justPublic) {
    ActivitiesGroupGenerator groupGenerator = new ActivitiesGroupGenerator();
    PeerReviews result = new PeerReviews();
    for (PeerReviewSummary peerReview : peerReviews) {
        if (justPublic && !peerReview.getVisibility().equals(org.orcid.jaxb.model.v3.dev1.common.Visibility.PUBLIC)) {
        // If it is just public and the funding is not public, just
        // ignore it
        } else {
            groupGenerator.group(peerReview);
        }
    }
    List<ActivitiesGroup> groups = groupGenerator.getGroups();
    for (ActivitiesGroup group : groups) {
        Set<GroupAble> groupKeys = group.getGroupKeys();
        Set<GroupableActivity> activities = group.getActivities();
        PeerReviewGroup peerReviewGroup = new PeerReviewGroup();
        // Fill the peer review groups with the external identifiers
        if (groupKeys == null || groupKeys.isEmpty()) {
            // Initialize the ids as an empty list
            peerReviewGroup.getIdentifiers().getExternalIdentifier();
        } else {
            for (GroupAble groupKey : groupKeys) {
                PeerReviewGroupKey key = (PeerReviewGroupKey) groupKey;
                ExternalID id = new ExternalID();
                // TODO: this is not nice
                id.setType(PeerReviewGroupKey.KEY_NAME);
                id.setValue(key.getGroupId());
                peerReviewGroup.getIdentifiers().getExternalIdentifier().add(id);
            }
        }
        // Fill the peer review group with the list of activities
        for (GroupableActivity activity : activities) {
            PeerReviewSummary peerReviewSummary = (PeerReviewSummary) activity;
            peerReviewGroup.getPeerReviewSummary().add(peerReviewSummary);
        }
        // Sort the peer reviews
        Collections.sort(peerReviewGroup.getPeerReviewSummary(), new GroupableActivityComparator());
        result.getPeerReviewGroup().add(peerReviewGroup);
    }
    return result;
}

Example 2 with Activity

use of org.orcid.jaxb.model.v3.dev1.record.Activity in project ORCID-Source by ORCID.

the class ProfileFundingManagerReadOnlyImpl method groupFundings.

/**
 * Generate a grouped list of funding with the given list of funding
 *
 * @param fundings
 *          The list of fundings to group
 * @param justPublic
 *          Specify if we want to group only the public elements in the given list
 * @return Fundings element with the FundingSummary elements grouped
 */
@Override
public Fundings groupFundings(List<FundingSummary> fundings, boolean justPublic) {
    ActivitiesGroupGenerator groupGenerator = new ActivitiesGroupGenerator();
    Fundings result = new Fundings();
    for (FundingSummary funding : fundings) {
        if (justPublic && !funding.getVisibility().equals(org.orcid.jaxb.model.v3.dev1.common.Visibility.PUBLIC)) {
        // If it is just public and the funding is not public, just
        // ignore it
        } else {
            groupGenerator.group(funding);
        }
    }
    List<ActivitiesGroup> groups = groupGenerator.getGroups();
    for (ActivitiesGroup group : groups) {
        Set<GroupAble> externalIdentifiers = group.getGroupKeys();
        Set<GroupableActivity> activities = group.getActivities();
        FundingGroup fundingGroup = new FundingGroup();
        // Fill the funding groups with the external identifiers
        if (externalIdentifiers == null || externalIdentifiers.isEmpty()) {
            // Initialize the ids as an empty list
            fundingGroup.getIdentifiers().getExternalIdentifier();
        } else {
            for (GroupAble extId : externalIdentifiers) {
                ExternalID fundingExtId = (ExternalID) extId;
                fundingGroup.getIdentifiers().getExternalIdentifier().add(fundingExtId.clone());
            }
        }
        // Fill the funding group with the list of activities
        for (GroupableActivity activity : activities) {
            FundingSummary fundingSummary = (FundingSummary) activity;
            fundingGroup.getFundingSummary().add(fundingSummary);
        }
        // Sort the fundings
        Collections.sort(fundingGroup.getFundingSummary(), new GroupableActivityComparator());
        result.getFundingGroup().add(fundingGroup);
    }
    return result;
}

Example 3 with Activity

use of org.orcid.jaxb.model.v3.dev1.record.Activity in project ORCID-Source by ORCID.

the class RecordTest method testViewRecordFromMemberAPI.

@Test
public void testViewRecordFromMemberAPI() throws InterruptedException, JSONException {
    String accessToken = getAccessToken();
    assertNotNull(accessToken);
    ClientResponse response = memberV3Dev1ApiClient.viewRecord(getUser1OrcidId(), accessToken);
    assertNotNull(response);
    assertEquals("invalid " + response, 200, response.getStatus());
    Record record = response.getEntity(Record.class);
    assertNotNull(record);
    assertNotNull(record.getOrcidIdentifier());
    assertEquals(getUser1OrcidId(), record.getOrcidIdentifier().getPath());
    // Check the visibility of every activity that exists
    if (record.getActivitiesSummary() != null) {
        // Distinctions
        if (record.getActivitiesSummary().getDistinctions() != null) {
            Distinctions e = record.getActivitiesSummary().getDistinctions();
            if (e.getSummaries() != null) {
                for (DistinctionSummary s : e.getSummaries()) {
                    assertNotNull(s.getSource());
                    assertNotNull(s.getVisibility());
                    Visibility v = s.getVisibility();
                    // owner
                    if (Visibility.PRIVATE.equals(v)) {
                        assertEquals(getClient1ClientId(), s.getSource().retrieveSourcePath());
                    }
                }
            }
        }
        // Educations
        if (record.getActivitiesSummary().getEducations() != null) {
            Educations e = record.getActivitiesSummary().getEducations();
            if (e.getSummaries() != null) {
                for (EducationSummary s : e.getSummaries()) {
                    assertNotNull(s.getSource());
                    assertNotNull(s.getVisibility());
                    Visibility v = s.getVisibility();
                    // owner
                    if (Visibility.PRIVATE.equals(v)) {
                        assertEquals(getClient1ClientId(), s.getSource().retrieveSourcePath());
                    }
                }
            }
        }
        // Employments
        if (record.getActivitiesSummary().getEmployments() != null) {
            Employments e = record.getActivitiesSummary().getEmployments();
            if (e.getSummaries() != null) {
                for (EmploymentSummary s : e.getSummaries()) {
                    assertNotNull(s.getSource());
                    assertNotNull(s.getVisibility());
                    Visibility v = s.getVisibility();
                    // owner
                    if (Visibility.PRIVATE.equals(v)) {
                        assertEquals(getClient1ClientId(), s.getSource().retrieveSourcePath());
                    }
                }
            }
        }
        // InvitedPositions
        if (record.getActivitiesSummary().getInvitedPositions() != null) {
            InvitedPositions e = record.getActivitiesSummary().getInvitedPositions();
            if (e.getSummaries() != null) {
                for (InvitedPositionSummary s : e.getSummaries()) {
                    assertNotNull(s.getSource());
                    assertNotNull(s.getVisibility());
                    Visibility v = s.getVisibility();
                    // owner
                    if (Visibility.PRIVATE.equals(v)) {
                        assertEquals(getClient1ClientId(), s.getSource().retrieveSourcePath());
                    }
                }
            }
        }
        // Memberships
        if (record.getActivitiesSummary().getMemberships() != null) {
            Memberships e = record.getActivitiesSummary().getMemberships();
            if (e.getSummaries() != null) {
                for (MembershipSummary s : e.getSummaries()) {
                    assertNotNull(s.getSource());
                    assertNotNull(s.getVisibility());
                    Visibility v = s.getVisibility();
                    // owner
                    if (Visibility.PRIVATE.equals(v)) {
                        assertEquals(getClient1ClientId(), s.getSource().retrieveSourcePath());
                    }
                }
            }
        }
        // Qualifications
        if (record.getActivitiesSummary().getQualifications() != null) {
            Qualifications e = record.getActivitiesSummary().getQualifications();
            if (e.getSummaries() != null) {
                for (QualificationSummary s : e.getSummaries()) {
                    assertNotNull(s.getSource());
                    assertNotNull(s.getVisibility());
                    Visibility v = s.getVisibility();
                    // owner
                    if (Visibility.PRIVATE.equals(v)) {
                        assertEquals(getClient1ClientId(), s.getSource().retrieveSourcePath());
                    }
                }
            }
        }
        // Services
        if (record.getActivitiesSummary().getServices() != null) {
            Services e = record.getActivitiesSummary().getServices();
            if (e.getSummaries() != null) {
                for (ServiceSummary s : e.getSummaries()) {
                    assertNotNull(s.getSource());
                    assertNotNull(s.getVisibility());
                    Visibility v = s.getVisibility();
                    // owner
                    if (Visibility.PRIVATE.equals(v)) {
                        assertEquals(getClient1ClientId(), s.getSource().retrieveSourcePath());
                    }
                }
            }
        }
        // Fundings
        if (record.getActivitiesSummary().getFundings() != null) {
            Fundings f = record.getActivitiesSummary().getFundings();
            List<FundingGroup> groups = f.getFundingGroup();
            if (groups != null) {
                for (FundingGroup fGroup : groups) {
                    List<FundingSummary> summaries = fGroup.getFundingSummary();
                    if (summaries != null) {
                        for (FundingSummary s : summaries) {
                            assertNotNull(s.getSource());
                            assertNotNull(s.getVisibility());
                            Visibility v = s.getVisibility();
                            // If the visibility is PRIVATE the client should be the owner
                            if (Visibility.PRIVATE.equals(v)) {
                                assertEquals(getClient1ClientId(), s.getSource().retrieveSourcePath());
                            }
                        }
                    }
                }
            }
        }
        // PeerReviews
        if (record.getActivitiesSummary().getPeerReviews() != null) {
            PeerReviews p = record.getActivitiesSummary().getPeerReviews();
            List<PeerReviewGroup> groups = p.getPeerReviewGroup();
            if (groups != null) {
                for (PeerReviewGroup pGroup : groups) {
                    List<PeerReviewSummary> summaries = pGroup.getPeerReviewSummary();
                    if (summaries != null) {
                        for (PeerReviewSummary s : summaries) {
                            assertNotNull(s.getSource());
                            assertNotNull(s.getVisibility());
                            Visibility v = s.getVisibility();
                            // If the visibility is PRIVATE the client should be the owner
                            if (Visibility.PRIVATE.equals(v)) {
                                assertEquals(getClient1ClientId(), s.getSource().retrieveSourcePath());
                            }
                        }
                    }
                }
            }
        }
        // Works
        if (record.getActivitiesSummary().getWorks() != null) {
            Works w = record.getActivitiesSummary().getWorks();
            List<WorkGroup> groups = w.getWorkGroup();
            if (groups != null) {
                for (WorkGroup wGroup : groups) {
                    List<WorkSummary> summaries = wGroup.getWorkSummary();
                    if (summaries != null) {
                        for (WorkSummary s : summaries) {
                            assertNotNull(s.getSource());
                            assertNotNull(s.getVisibility());
                            Visibility v = s.getVisibility();
                            // If the visibility is PRIVATE the client should be the owner
                            if (Visibility.PRIVATE.equals(v)) {
                                assertEquals(getClient1ClientId(), s.getSource().retrieveSourcePath());
                            }
                        }
                    }
                }
            }
        }
    }
    // Check the visibility of every biography elements that exists
    if (record.getPerson() != null) {
        // Address
        if (record.getPerson().getAddresses() != null) {
            Addresses addresses = record.getPerson().getAddresses();
            List<Address> list = addresses.getAddress();
            if (list != null) {
                for (Address o : list) {
                    assertNotNull(o.getSource());
                    assertNotNull(o.getVisibility());
                    Visibility v = o.getVisibility();
                    // If the visibility is PRIVATE the client should be the owner
                    if (Visibility.PRIVATE.equals(v)) {
                        assertEquals(getClient1ClientId(), o.getSource().retrieveSourcePath());
                    }
                }
            }
        }
        // Biography
        if (record.getPerson().getBiography() != null) {
            Biography b = record.getPerson().getBiography();
            if (b != null) {
                assertNotNull(b.getVisibility());
                if (Visibility.PRIVATE.equals(b.getVisibility())) {
                    fail("Visibility is private");
                }
            }
        }
        // Emails
        if (record.getPerson().getEmails() != null) {
            Emails emails = record.getPerson().getEmails();
            List<Email> list = emails.getEmails();
            if (list != null) {
                for (Email e : list) {
                    assertNotNull(e.getVisibility());
                    if (Visibility.PRIVATE.equals(e.getVisibility())) {
                        fail("Email " + e.getEmail() + " is private");
                    }
                }
            }
        }
        // External identifiers
        if (record.getPerson().getExternalIdentifiers() != null) {
            PersonExternalIdentifiers extIds = record.getPerson().getExternalIdentifiers();
            List<PersonExternalIdentifier> list = extIds.getExternalIdentifiers();
            if (list != null) {
                for (PersonExternalIdentifier e : list) {
                    assertNotNull(e.getVisibility());
                    if (Visibility.PRIVATE.equals(e.getVisibility())) {
                        assertEquals(getClient1ClientId(), e.getSource().retrieveSourcePath());
                    }
                }
            }
        }
        // Keywords
        if (record.getPerson().getKeywords() != null) {
            Keywords keywords = record.getPerson().getKeywords();
            List<Keyword> list = keywords.getKeywords();
            if (list != null) {
                for (Keyword e : list) {
                    assertNotNull(e.getVisibility());
                    if (Visibility.PRIVATE.equals(e.getVisibility())) {
                        assertEquals(getClient1ClientId(), e.getSource().retrieveSourcePath());
                    }
                }
            }
        }
        // Name
        if (record.getPerson().getName() != null) {
            Name name = record.getPerson().getName();
            if (Visibility.PRIVATE.equals(name.getVisibility())) {
                fail("Name is private");
            }
        }
        // Other names
        if (record.getPerson().getOtherNames() != null) {
            OtherNames otherNames = record.getPerson().getOtherNames();
            List<OtherName> list = otherNames.getOtherNames();
            if (list != null) {
                for (OtherName e : list) {
                    assertNotNull(e.getVisibility());
                    if (Visibility.PRIVATE.equals(e.getVisibility())) {
                        assertEquals(getClient1ClientId(), e.getSource().retrieveSourcePath());
                    }
                }
            }
        }
        // Researcher urls
        if (record.getPerson().getResearcherUrls() != null) {
            ResearcherUrls rUrls = record.getPerson().getResearcherUrls();
            List<ResearcherUrl> list = rUrls.getResearcherUrls();
            if (list != null) {
                for (ResearcherUrl e : list) {
                    assertNotNull(e.getVisibility());
                    if (Visibility.PRIVATE.equals(e.getVisibility())) {
                        assertEquals(getClient1ClientId(), e.getSource().retrieveSourcePath());
                    }
                }
            }
        }
    }
}

Example 4 with Activity

use of org.orcid.jaxb.model.v3.dev1.record.Activity in project ORCID-Source by ORCID.

the class WorkManagerTest method testCreateWorkWithBulk_TwoSelf_DupError.

@Test
public void testCreateWorkWithBulk_TwoSelf_DupError() {
    String orcid = "0000-0000-0000-0003";
    Long time = System.currentTimeMillis();
    when(sourceManager.retrieveSourceEntity()).thenReturn(new SourceEntity(new ClientDetailsEntity(CLIENT_1_ID)));
    WorkBulk bulk = new WorkBulk();
    // Work # 1
    Work work1 = new Work();
    WorkTitle title1 = new WorkTitle();
    title1.setTitle(new Title("Work # 1"));
    work1.setWorkTitle(title1);
    ExternalIDs extIds1 = new ExternalIDs();
    ExternalID extId1 = new ExternalID();
    extId1.setRelationship(Relationship.SELF);
    extId1.setType("isbn");
    extId1.setUrl(new Url("http://isbn/1/" + time));
    extId1.setValue("isbn-1");
    extIds1.getExternalIdentifier().add(extId1);
    work1.setWorkExternalIdentifiers(extIds1);
    work1.setWorkType(WorkType.BOOK);
    bulk.getBulk().add(work1);
    // Work # 2
    Work work2 = new Work();
    WorkTitle title2 = new WorkTitle();
    title2.setTitle(new Title("Work # 2"));
    work2.setWorkTitle(title2);
    ExternalIDs extIds2 = new ExternalIDs();
    ExternalID extId2 = new ExternalID();
    extId2.setRelationship(Relationship.SELF);
    extId2.setType("isbn");
    extId2.setUrl(new Url("http://isbn/1/" + time));
    extId2.setValue("isbn-1");
    extIds2.getExternalIdentifier().add(extId2);
    work2.setWorkExternalIdentifiers(extIds2);
    work2.setWorkType(WorkType.BOOK);
    bulk.getBulk().add(work2);
    WorkBulk updatedBulk = workManager.createWorks(orcid, bulk);
    assertNotNull(updatedBulk);
    assertEquals(2, updatedBulk.getBulk().size());
    assertTrue(updatedBulk.getBulk().get(0) instanceof Work);
    assertNotNull(((Work) updatedBulk.getBulk().get(0)).getPutCode());
    assertEquals(Relationship.SELF, ((Work) updatedBulk.getBulk().get(0)).getExternalIdentifiers().getExternalIdentifier().get(0).getRelationship());
    assertEquals("isbn-1", ((Work) updatedBulk.getBulk().get(0)).getExternalIdentifiers().getExternalIdentifier().get(0).getValue());
    assertTrue(updatedBulk.getBulk().get(1) instanceof OrcidError);
    assertEquals(Integer.valueOf(9021), ((OrcidError) updatedBulk.getBulk().get(1)).getErrorCode());
    assertEquals("409 Conflict: You have already added this activity (matched by external identifiers.) If you are trying to edit the item, please use PUT instead of POST.", ((OrcidError) updatedBulk.getBulk().get(1)).getDeveloperMessage());
    workManager.removeWorks(orcid, Arrays.asList(((Work) updatedBulk.getBulk().get(0)).getPutCode()));
}

Example 5 with Activity

use of org.orcid.jaxb.model.v3.dev1.record.Activity in project ORCID-Source by ORCID.

the class WorkManagerTest method testCreateWorkWithBulk_TwoSelf_DupError_CaseSensitive.

@Test
public void testCreateWorkWithBulk_TwoSelf_DupError_CaseSensitive() {
    String orcid = "0000-0000-0000-0003";
    Long time = System.currentTimeMillis();
    when(sourceManager.retrieveSourceEntity()).thenReturn(new SourceEntity(new ClientDetailsEntity(CLIENT_1_ID)));
    WorkBulk bulk = new WorkBulk();
    // Work # 1
    Work work1 = new Work();
    WorkTitle title1 = new WorkTitle();
    title1.setTitle(new Title("Work # 1"));
    work1.setWorkTitle(title1);
    ExternalIDs extIds1 = new ExternalIDs();
    ExternalID extId1 = new ExternalID();
    extId1.setRelationship(Relationship.SELF);
    extId1.setType("doi");
    extId1.setUrl(new Url("http://doi.org/10.1/CASE" + time));
    extId1.setValue("10.1/CASE");
    extIds1.getExternalIdentifier().add(extId1);
    work1.setWorkExternalIdentifiers(extIds1);
    work1.setWorkType(WorkType.JOURNAL_ARTICLE);
    bulk.getBulk().add(work1);
    // Work # 2
    Work work2 = new Work();
    WorkTitle title2 = new WorkTitle();
    title2.setTitle(new Title("Work # 2"));
    work2.setWorkTitle(title2);
    ExternalIDs extIds2 = new ExternalIDs();
    ExternalID extId2 = new ExternalID();
    extId2.setRelationship(Relationship.SELF);
    extId2.setType("doi");
    extId2.setUrl(new Url("http://doi.org/10.1/case" + time));
    // this should fail as dois are not case sensitive
    extId2.setValue("10.1/case");
    extIds2.getExternalIdentifier().add(extId2);
    work2.setWorkExternalIdentifiers(extIds2);
    work2.setWorkType(WorkType.JOURNAL_ARTICLE);
    bulk.getBulk().add(work2);
    WorkBulk updatedBulk = workManager.createWorks(orcid, bulk);
    assertNotNull(updatedBulk);
    assertEquals(2, updatedBulk.getBulk().size());
    assertTrue(updatedBulk.getBulk().get(0) instanceof Work);
    assertNotNull(((Work) updatedBulk.getBulk().get(0)).getPutCode());
    assertEquals(Relationship.SELF, ((Work) updatedBulk.getBulk().get(0)).getExternalIdentifiers().getExternalIdentifier().get(0).getRelationship());
    assertEquals("10.1/CASE", ((Work) updatedBulk.getBulk().get(0)).getExternalIdentifiers().getExternalIdentifier().get(0).getValue());
    assertEquals("10.1/case", ((Work) updatedBulk.getBulk().get(0)).getExternalIdentifiers().getExternalIdentifier().get(0).getNormalized().getValue());
    assertTrue(updatedBulk.getBulk().get(1) instanceof OrcidError);
    assertEquals(Integer.valueOf(9021), ((OrcidError) updatedBulk.getBulk().get(1)).getErrorCode());
    assertEquals("409 Conflict: You have already added this activity (matched by external identifiers.) If you are trying to edit the item, please use PUT instead of POST.", ((OrcidError) updatedBulk.getBulk().get(1)).getDeveloperMessage());
    workManager.removeWorks(orcid, Arrays.asList(((Work) updatedBulk.getBulk().get(0)).getPutCode()));
}