Examples with SourceEntity org.orcid.persistence.jpa.entities.SourceEntity used on opensource projects

Example 46 with SourceEntity

use of org.orcid.persistence.jpa.entities.SourceEntity in project ORCID-Source by ORCID.

the class AddressManagerImpl method updateAddress.

@Override
@Transactional
public Address updateAddress(String orcid, Long putCode, Address address, boolean isApiRequest) {
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    AddressEntity updatedEntity = addressDao.getAddress(orcid, putCode);
    Visibility originalVisibility = Visibility.fromValue(updatedEntity.getVisibility().value());
    //Save the original source
    String existingSourceId = updatedEntity.getSourceId();
    String existingClientSourceId = updatedEntity.getClientSourceId();
    //If it is an update from the API, check the source and preserve the original visibility
    if (isApiRequest) {
        orcidSecurityManager.checkSource(updatedEntity);
    }
    // Validate the address
    PersonValidator.validateAddress(address, sourceEntity, false, isApiRequest, originalVisibility);
    // Validate it is not duplicated
    List<AddressEntity> existingAddresses = addressDao.getAddresses(orcid, getLastModified(orcid));
    for (AddressEntity existing : existingAddresses) {
        //If it is not the same element
        if (!existing.getId().equals(address.getPutCode())) {
            if (isDuplicated(existing, address, sourceEntity)) {
                Map<String, String> params = new HashMap<String, String>();
                params.put("type", "address");
                params.put("value", address.getCountry().getValue().value());
                throw new OrcidDuplicatedElementException(params);
            }
        }
    }
    adapter.toAddressEntity(address, updatedEntity);
    updatedEntity.setLastModified(new Date());
    //Be sure it doesn't overwrite the source
    updatedEntity.setSourceId(existingSourceId);
    updatedEntity.setClientSourceId(existingClientSourceId);
    addressDao.merge(updatedEntity);
    return adapter.toAddress(updatedEntity);
}

Example 47 with SourceEntity

use of org.orcid.persistence.jpa.entities.SourceEntity in project ORCID-Source by ORCID.

the class IdentifierTypeManagerImpl method updateIdentifierType.

@Override
@CacheEvict(value = { "identifier-types", "identifier-types-map" }, allEntries = true)
public IdentifierType updateIdentifierType(IdentifierType id) {
    IdentifierTypeEntity entity = idTypeDao.getEntityByName(externalIdentifierTypeConverter.convertTo(id.getName(), null));
    SourceEntity sourceEntity = new SourceEntity();
    sourceEntity.setSourceClient(entity.getSourceClient());
    securityManager.checkSource(entity);
    entity.setIsDeprecated(id.getDeprecated());
    entity.setResolutionPrefix(id.getResolutionPrefix());
    entity.setValidationRegex(id.getValidationRegex());
    entity.setLastModified(new Date());
    entity.setIsCaseSensitive(id.getCaseSensitive());
    entity.setPrimaryUse(id.getPrimaryUse());
    entity = idTypeDao.updateIdentifierType(entity);
    return adapter.fromEntity(entity);
}

Example 48 with SourceEntity

use of org.orcid.persistence.jpa.entities.SourceEntity in project ORCID-Source by ORCID.

the class ExternalIdentifierManagerImpl method updateExternalIdentifier.

@Override
public PersonExternalIdentifier updateExternalIdentifier(String orcid, PersonExternalIdentifier externalIdentifier, boolean isApiRequest) {
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    ExternalIdentifierEntity updatedExternalIdentifierEntity = externalIdentifierDao.getExternalIdentifierEntity(orcid, externalIdentifier.getPutCode());
    //Save the original source
    String existingSourceId = updatedExternalIdentifierEntity.getSourceId();
    String existingClientSourceId = updatedExternalIdentifierEntity.getClientSourceId();
    Visibility originalVisibility = Visibility.fromValue(updatedExternalIdentifierEntity.getVisibility().value());
    // Validate external identifier
    PersonValidator.validateExternalIdentifier(externalIdentifier, sourceEntity, false, isApiRequest, originalVisibility, requireRelationshipOnExternalIdentifier);
    // Validate it is not duplicated
    List<ExternalIdentifierEntity> existingExternalIdentifiers = externalIdentifierDao.getExternalIdentifiers(orcid, getLastModified(orcid));
    for (ExternalIdentifierEntity existing : existingExternalIdentifiers) {
        if (isDuplicated(existing, externalIdentifier, sourceEntity)) {
            Map<String, String> params = new HashMap<String, String>();
            params.put("type", "external-identifier");
            params.put("value", externalIdentifier.getUrl().getValue());
            throw new OrcidDuplicatedElementException(params);
        }
    }
    orcidSecurityManager.checkSource(updatedExternalIdentifierEntity);
    jpaJaxbExternalIdentifierAdapter.toExternalIdentifierEntity(externalIdentifier, updatedExternalIdentifierEntity);
    updatedExternalIdentifierEntity.setLastModified(new Date());
    //Set source
    updatedExternalIdentifierEntity.setSourceId(existingSourceId);
    updatedExternalIdentifierEntity.setClientSourceId(existingClientSourceId);
    externalIdentifierDao.merge(updatedExternalIdentifierEntity);
    return jpaJaxbExternalIdentifierAdapter.toExternalIdentifier(updatedExternalIdentifierEntity);
}

Example 49 with SourceEntity

use of org.orcid.persistence.jpa.entities.SourceEntity in project ORCID-Source by ORCID.

the class AffiliationsManagerImpl method updateEmploymentAffiliation.

/**
     * Updates a employment that belongs to the given user
     * 
     * @param orcid
     *            The user
     * @param employment
     *            The employment to update
     * @return the updated employment
     * */
@Override
public Employment updateEmploymentAffiliation(String orcid, Employment employment, boolean isApiRequest) {
    OrgAffiliationRelationEntity employmentEntity = orgAffiliationRelationDao.getOrgAffiliationRelation(orcid, employment.getPutCode());
    Visibility originalVisibility = employmentEntity.getVisibility();
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    //Save the original source
    String existingSourceId = employmentEntity.getSourceId();
    String existingClientSourceId = employmentEntity.getClientSourceId();
    orcidSecurityManager.checkSource(employmentEntity);
    activityValidator.validateEmployment(employment, sourceEntity, false, isApiRequest, originalVisibility);
    jpaJaxbEmploymentAdapter.toOrgAffiliationRelationEntity(employment, employmentEntity);
    employmentEntity.setVisibility(originalVisibility);
    //Be sure it doesn't overwrite the source
    employmentEntity.setSourceId(existingSourceId);
    employmentEntity.setClientSourceId(existingClientSourceId);
    // Updates the give organization with the latest organization from
    // database, or, create a new one
    OrgEntity updatedOrganization = orgManager.getOrgEntity(employment);
    employmentEntity.setOrg(updatedOrganization);
    employmentEntity.setAffiliationType(AffiliationType.EMPLOYMENT);
    employmentEntity = orgAffiliationRelationDao.merge(employmentEntity);
    orgAffiliationRelationDao.flush();
    notificationManager.sendAmendEmail(orcid, AmendedSection.EMPLOYMENT, createItem(employmentEntity));
    return jpaJaxbEmploymentAdapter.toEmployment(employmentEntity);
}

Example 50 with SourceEntity

use of org.orcid.persistence.jpa.entities.SourceEntity in project ORCID-Source by ORCID.

the class AffiliationsManagerImpl method updateEducationAffiliation.

/**
     * Updates a education that belongs to the given user
     * 
     * @param orcid
     *            The user
     * @param education
     *            The education to update
     * @return the updated education
     * */
@Override
public Education updateEducationAffiliation(String orcid, Education education, boolean isApiRequest) {
    OrgAffiliationRelationEntity educationEntity = orgAffiliationRelationDao.getOrgAffiliationRelation(orcid, education.getPutCode());
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    //Save the original source
    String existingSourceId = educationEntity.getSourceId();
    String existingClientSourceId = educationEntity.getClientSourceId();
    Visibility originalVisibility = educationEntity.getVisibility();
    orcidSecurityManager.checkSource(educationEntity);
    activityValidator.validateEducation(education, sourceEntity, false, isApiRequest, originalVisibility);
    jpaJaxbEducationAdapter.toOrgAffiliationRelationEntity(education, educationEntity);
    educationEntity.setVisibility(originalVisibility);
    //Be sure it doesn't overwrite the source
    educationEntity.setSourceId(existingSourceId);
    educationEntity.setClientSourceId(existingClientSourceId);
    // Updates the give organization with the latest organization from
    // database, or, create a new one
    OrgEntity updatedOrganization = orgManager.getOrgEntity(education);
    educationEntity.setOrg(updatedOrganization);
    educationEntity.setAffiliationType(AffiliationType.EDUCATION);
    educationEntity = orgAffiliationRelationDao.merge(educationEntity);
    orgAffiliationRelationDao.flush();
    notificationManager.sendAmendEmail(orcid, AmendedSection.EDUCATION, createItem(educationEntity));
    return jpaJaxbEducationAdapter.toEducation(educationEntity);
}