Examples with SourceEntity org.orcid.persistence.jpa.entities.SourceEntity used on opensource projects

Example 51 with SourceEntity

use of org.orcid.persistence.jpa.entities.SourceEntity in project ORCID-Source by ORCID.

the class WorkManagerImpl method updateWork.

@Override
@Transactional
public Work updateWork(String orcid, Work work, boolean isApiRequest) {
    WorkEntity workEntity = workDao.getWork(orcid, work.getPutCode());
    Visibility originalVisibility = workEntity.getVisibility();
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    //Save the original source
    String existingSourceId = workEntity.getSourceId();
    String existingClientSourceId = workEntity.getClientSourceId();
    if (isApiRequest) {
        activityValidator.validateWork(work, sourceEntity, false, isApiRequest, workEntity.getVisibility());
        long lastModifiedTime = getLastModified(orcid);
        List<Work> existingWorks = this.findWorks(orcid, lastModifiedTime);
        for (Work existing : existingWorks) {
            // Dont compare the updated peer review with the DB version
            if (!existing.getPutCode().equals(work.getPutCode())) {
                activityValidator.checkExternalIdentifiersForDuplicates(work.getExternalIdentifiers(), existing.getExternalIdentifiers(), existing.getSource(), sourceEntity);
            }
        }
    } else {
        //validate external ID vocab
        externalIDValidator.validateWorkOrPeerReview(work.getExternalIdentifiers());
    }
    orcidSecurityManager.checkSource(workEntity);
    jpaJaxbWorkAdapter.toWorkEntity(work, workEntity);
    workEntity.setVisibility(originalVisibility);
    //Be sure it doesn't overwrite the source
    workEntity.setSourceId(existingSourceId);
    workEntity.setClientSourceId(existingClientSourceId);
    workDao.merge(workEntity);
    workDao.flush();
    notificationManager.sendAmendEmail(orcid, AmendedSection.WORK, createItem(workEntity));
    return jpaJaxbWorkAdapter.toWork(workEntity);
}

Example 52 with SourceEntity

use of org.orcid.persistence.jpa.entities.SourceEntity in project ORCID-Source by ORCID.

the class WorkManagerImpl method createWork.

@Override
@Transactional
public Work createWork(String orcid, Work work, boolean isApiRequest) {
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    if (isApiRequest) {
        activityValidator.validateWork(work, sourceEntity, true, isApiRequest, null);
        // duplicates
        if (!sourceEntity.getSourceId().equals(orcid)) {
            long lastModifiedTime = getLastModified(orcid);
            List<Work> existingWorks = this.findWorks(orcid, lastModifiedTime);
            if (existingWorks != null) {
                for (Work existing : existingWorks) {
                    activityValidator.checkExternalIdentifiersForDuplicates(work.getExternalIdentifiers(), existing.getExternalIdentifiers(), existing.getSource(), sourceEntity);
                }
            }
        }
    } else {
        // validate external ID vocab
        externalIDValidator.validateWorkOrPeerReview(work.getExternalIdentifiers());
    }
    WorkEntity workEntity = jpaJaxbWorkAdapter.toWorkEntity(work);
    ProfileEntity profile = profileEntityCacheManager.retrieve(orcid);
    workEntity.setProfile(profile);
    workEntity.setAddedToProfileDate(new Date());
    // Set source id 
    if (sourceEntity.getSourceProfile() != null) {
        workEntity.setSourceId(sourceEntity.getSourceProfile().getId());
    }
    if (sourceEntity.getSourceClient() != null) {
        workEntity.setClientSourceId(sourceEntity.getSourceClient().getId());
    }
    setIncomingWorkPrivacy(workEntity, profile);
    DisplayIndexCalculatorHelper.setDisplayIndexOnNewEntity(workEntity, isApiRequest);
    workDao.persist(workEntity);
    workDao.flush();
    notificationManager.sendAmendEmail(orcid, AmendedSection.WORK, createItem(workEntity));
    return jpaJaxbWorkAdapter.toWork(workEntity);
}

Example 53 with SourceEntity

use of org.orcid.persistence.jpa.entities.SourceEntity in project ORCID-Source by ORCID.

the class ResearcherUrlManagerImpl method updateResearcherUrl.

@Override
@Transactional
public ResearcherUrl updateResearcherUrl(String orcid, ResearcherUrl researcherUrl, boolean isApiRequest) {
    ResearcherUrlEntity updatedResearcherUrlEntity = researcherUrlDao.getResearcherUrl(orcid, researcherUrl.getPutCode());
    Visibility originalVisibility = Visibility.fromValue(updatedResearcherUrlEntity.getVisibility().value());
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    //Save the original source
    String existingSourceId = updatedResearcherUrlEntity.getSourceId();
    String existingClientSourceId = updatedResearcherUrlEntity.getClientSourceId();
    // Validate the researcher url
    PersonValidator.validateResearcherUrl(researcherUrl, sourceEntity, false, isApiRequest, originalVisibility);
    // Validate it is not duplicated
    List<ResearcherUrlEntity> existingResearcherUrls = researcherUrlDao.getResearcherUrls(orcid, getLastModified(orcid));
    for (ResearcherUrlEntity existing : existingResearcherUrls) {
        if (isDuplicated(existing, researcherUrl, sourceEntity)) {
            Map<String, String> params = new HashMap<String, String>();
            params.put("type", "researcher-url");
            params.put("value", researcherUrl.getUrlName());
            throw new OrcidDuplicatedElementException(params);
        }
    }
    orcidSecurityManager.checkSource(updatedResearcherUrlEntity);
    jpaJaxbResearcherUrlAdapter.toResearcherUrlEntity(researcherUrl, updatedResearcherUrlEntity);
    updatedResearcherUrlEntity.setLastModified(new Date());
    //Be sure it doesn't overwrite the source
    updatedResearcherUrlEntity.setSourceId(existingSourceId);
    updatedResearcherUrlEntity.setClientSourceId(existingClientSourceId);
    researcherUrlDao.merge(updatedResearcherUrlEntity);
    return jpaJaxbResearcherUrlAdapter.toResearcherUrl(updatedResearcherUrlEntity);
}

Example 54 with SourceEntity

use of org.orcid.persistence.jpa.entities.SourceEntity in project ORCID-Source by ORCID.

the class ResearcherUrlManagerImpl method updateResearcherUrls.

/**
     * Update the researcher urls associated with a specific account
     * 
     * @param orcid
     * @param researcherUrls
     * */
@Override
@Transactional
public ResearcherUrls updateResearcherUrls(String orcid, ResearcherUrls researcherUrls) {
    List<ResearcherUrlEntity> existingEntities = researcherUrlDao.getResearcherUrls(orcid, getLastModified(orcid));
    //Delete the deleted ones
    for (ResearcherUrlEntity existingEntity : existingEntities) {
        boolean deleteMe = true;
        if (researcherUrls.getResearcherUrls() != null) {
            for (ResearcherUrl updatedOrNew : researcherUrls.getResearcherUrls()) {
                if (existingEntity.getId().equals(updatedOrNew.getPutCode())) {
                    deleteMe = false;
                    break;
                }
            }
        }
        if (deleteMe) {
            try {
                researcherUrlDao.deleteResearcherUrl(existingEntity.getProfile().getId(), existingEntity.getId());
            } catch (Exception e) {
                throw new ApplicationException("Unable to delete researcher url " + existingEntity.getId(), e);
            }
        }
    }
    // Update or create new
    if (researcherUrls != null && researcherUrls.getResearcherUrls() != null) {
        for (ResearcherUrl updatedOrNew : researcherUrls.getResearcherUrls()) {
            if (updatedOrNew.getPutCode() != null) {
                //Update the existing ones
                for (ResearcherUrlEntity existingEntity : existingEntities) {
                    if (existingEntity.getId().equals(updatedOrNew.getPutCode())) {
                        existingEntity.setLastModified(new Date());
                        existingEntity.setVisibility(updatedOrNew.getVisibility());
                        existingEntity.setUrl(updatedOrNew.getUrl().getValue());
                        existingEntity.setUrlName(updatedOrNew.getUrlName());
                        existingEntity.setDisplayIndex(updatedOrNew.getDisplayIndex());
                        researcherUrlDao.merge(existingEntity);
                    }
                }
            } else {
                //Add the new ones
                ResearcherUrlEntity newResearcherUrl = jpaJaxbResearcherUrlAdapter.toResearcherUrlEntity(updatedOrNew);
                SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
                ProfileEntity profile = new ProfileEntity(orcid);
                newResearcherUrl.setUser(profile);
                newResearcherUrl.setDateCreated(new Date());
                newResearcherUrl.setLastModified(new Date());
                if (sourceEntity.getSourceProfile() != null) {
                    newResearcherUrl.setSourceId(sourceEntity.getSourceProfile().getId());
                }
                if (sourceEntity.getSourceClient() != null) {
                    newResearcherUrl.setClientSourceId(sourceEntity.getSourceClient().getId());
                }
                newResearcherUrl.setVisibility(updatedOrNew.getVisibility());
                newResearcherUrl.setDisplayIndex(updatedOrNew.getDisplayIndex());
                researcherUrlDao.persist(newResearcherUrl);
            }
        }
    }
    return researcherUrls;
}

Example 55 with SourceEntity

use of org.orcid.persistence.jpa.entities.SourceEntity in project ORCID-Source by ORCID.

the class ResearcherUrlManagerImpl method createResearcherUrl.

@Override
public ResearcherUrl createResearcherUrl(String orcid, ResearcherUrl researcherUrl, boolean isApiRequest) {
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    // Validate the researcher url
    PersonValidator.validateResearcherUrl(researcherUrl, sourceEntity, true, isApiRequest, null);
    // Validate it is not duplicated
    List<ResearcherUrlEntity> existingResearcherUrls = researcherUrlDao.getResearcherUrls(orcid, getLastModified(orcid));
    for (ResearcherUrlEntity existing : existingResearcherUrls) {
        if (isDuplicated(existing, researcherUrl, sourceEntity)) {
            Map<String, String> params = new HashMap<String, String>();
            params.put("type", "researcher-url");
            params.put("value", researcherUrl.getUrlName());
            throw new OrcidDuplicatedElementException(params);
        }
    }
    ResearcherUrlEntity newEntity = jpaJaxbResearcherUrlAdapter.toResearcherUrlEntity(researcherUrl);
    ProfileEntity profile = profileEntityCacheManager.retrieve(orcid);
    newEntity.setUser(profile);
    newEntity.setDateCreated(new Date());
    //Set the source
    if (sourceEntity.getSourceProfile() != null) {
        newEntity.setSourceId(sourceEntity.getSourceProfile().getId());
    }
    if (sourceEntity.getSourceClient() != null) {
        newEntity.setClientSourceId(sourceEntity.getSourceClient().getId());
    }
    setIncomingPrivacy(newEntity, profile);
    DisplayIndexCalculatorHelper.setDisplayIndexOnNewEntity(newEntity, isApiRequest);
    researcherUrlDao.persist(newEntity);
    return jpaJaxbResearcherUrlAdapter.toResearcherUrl(newEntity);
}