Examples with SourceEntity org.orcid.persistence.jpa.entities.SourceEntity used on opensource projects

Example 61 with SourceEntity

use of org.orcid.persistence.jpa.entities.SourceEntity in project ORCID-Source by ORCID.

the class ActivityValidatorTest method validateDuplicatedExtIds_noDuplicatesTest.

/**
     * VALIDATE DUPLICATED EXTERNAL IDENTIFIERS
     * */
@SuppressWarnings("deprecation")
@Test
public void validateDuplicatedExtIds_noDuplicatesTest() {
    SourceEntity source1 = mock(SourceEntity.class);
    when(source1.getSourceName()).thenReturn("source name");
    when(source1.getSourceId()).thenReturn("APP-00000000000000");
    SourceOrcid sourceOrcid = new SourceOrcid();
    sourceOrcid.setPath("0000-0000-0000-0000");
    Source source2 = mock(Source.class);
    when(source2.getSourceName()).thenReturn(new SourceName("other source name"));
    when(source2.getSourceOrcid()).thenReturn(sourceOrcid);
    ExternalIDs extIds1 = getExternalIDs();
    ExternalIDs extIds2 = getExternalIDs();
    activityValidator.checkExternalIdentifiersForDuplicates(extIds1, extIds2, source2, source1);
}

Example 62 with SourceEntity

use of org.orcid.persistence.jpa.entities.SourceEntity in project ORCID-Source by ORCID.

the class ActivityValidatorTest method validateGroupId_validTest.

/**
     * VALIDATE GROUP ID RECORD
     * */
@Test
public void validateGroupId_validTest() {
    SourceEntity source = mock(SourceEntity.class);
    when(source.getSourceName()).thenReturn("source name");
    GroupIdRecord g = getGroupIdRecord();
    activityValidator.validateGroupIdRecord(g, true, source);
}

Example 63 with SourceEntity

use of org.orcid.persistence.jpa.entities.SourceEntity in project ORCID-Source by ORCID.

the class ActivityValidatorTest method validateDuplicatedExtIds_duplicatesFoundTest.

@SuppressWarnings("deprecation")
@Test(expected = OrcidDuplicatedActivityException.class)
public void validateDuplicatedExtIds_duplicatesFoundTest() {
    SourceEntity source1 = mock(SourceEntity.class);
    when(source1.getSourceName()).thenReturn("source name");
    when(source1.getSourceId()).thenReturn("APP-00000000000000");
    SourceClientId sourceClientId = new SourceClientId();
    sourceClientId.setPath("APP-00000000000000");
    Source source2 = mock(Source.class);
    when(source2.getSourceName()).thenReturn(new SourceName("source name"));
    when(source2.getSourceClientId()).thenReturn(sourceClientId);
    ExternalIDs extIds1 = getExternalIDs();
    ExternalIDs extIds2 = getExternalIDs();
    activityValidator.checkExternalIdentifiersForDuplicates(extIds1, extIds2, source2, source1);
}

Example 64 with SourceEntity

use of org.orcid.persistence.jpa.entities.SourceEntity in project ORCID-Source by ORCID.

the class Jaxb2JpaAdapterImpl method getSourceId.

private String getSourceId() {
    SourceEntity source = sourceManager.retrieveSourceEntity();
    String sourceId = null;
    //source mananger should never return null, but for some unit tests it does, so, we return the user id
    if (source != null) {
        sourceId = source.getSourceId();
    }
    return sourceId;
}

Example 65 with SourceEntity

use of org.orcid.persistence.jpa.entities.SourceEntity in project ORCID-Source by ORCID.

the class WorkManagerImpl method createWorks.

/**
     * Add a list of works to the given profile
     * 
     * @param works
     *            The list of works that want to be added
     * @param orcid
     *            The id of the user we want to add the works to
     * 
     * @return the work bulk with the put codes of the new works or the error
     *         that indicates why a work can't be added
     */
@Override
@Transactional
public WorkBulk createWorks(String orcid, WorkBulk workBulk) {
    SourceEntity sourceEntity = sourceManager.retrieveSourceEntity();
    Set<ExternalID> existingExternalIdentifiers = buildExistingExternalIdsSet(orcid, sourceEntity.getSourceId());
    if (workBulk.getBulk() != null && !workBulk.getBulk().isEmpty()) {
        List<BulkElement> bulk = workBulk.getBulk();
        //Check bulk size
        if (bulk.size() > maxBulkSize) {
            Locale locale = localeManager.getLocale();
            throw new IllegalArgumentException(messageSource.getMessage("apiError.validation_too_many_elements_in_bulk.exception", new Object[] { maxBulkSize }, locale));
        }
        for (int i = 0; i < bulk.size(); i++) {
            if (Work.class.isAssignableFrom(bulk.get(i).getClass())) {
                Work work = (Work) bulk.get(i);
                try {
                    //Validate the work
                    activityValidator.validateWork(work, sourceEntity, true, true, null);
                    //Validate it is not duplicated
                    if (work.getExternalIdentifiers() != null) {
                        for (ExternalID extId : work.getExternalIdentifiers().getExternalIdentifier()) {
                            if (existingExternalIdentifiers.contains(extId)) {
                                Map<String, String> params = new HashMap<String, String>();
                                params.put("clientName", sourceEntity.getSourceName());
                                throw new OrcidDuplicatedActivityException(params);
                            }
                        }
                    }
                    //Save the work
                    WorkEntity workEntity = jpaJaxbWorkAdapter.toWorkEntity(work);
                    ProfileEntity profile = profileEntityCacheManager.retrieve(orcid);
                    workEntity.setProfile(profile);
                    workEntity.setAddedToProfileDate(new Date());
                    // Set source id 
                    if (sourceEntity.getSourceProfile() != null) {
                        workEntity.setSourceId(sourceEntity.getSourceProfile().getId());
                    }
                    if (sourceEntity.getSourceClient() != null) {
                        workEntity.setClientSourceId(sourceEntity.getSourceClient().getId());
                    }
                    setIncomingWorkPrivacy(workEntity, profile);
                    DisplayIndexCalculatorHelper.setDisplayIndexOnNewEntity(workEntity, true);
                    workDao.persist(workEntity);
                    //Update the element in the bulk
                    Work updatedWork = jpaJaxbWorkAdapter.toWork(workEntity);
                    bulk.set(i, updatedWork);
                    //Add the work extIds to the list of existing external identifiers
                    addExternalIdsToExistingSet(updatedWork, existingExternalIdentifiers);
                } catch (Exception e) {
                    //Get the exception 
                    OrcidError orcidError = orcidCoreExceptionMapper.getOrcidError(e);
                    bulk.set(i, orcidError);
                }
            }
        }
        workDao.flush();
    }
    return workBulk;
}