Examples with CohortReview org.pmiops.workbench.model.CohortReview used on opensource projects

Example 1 with CohortReview

use of org.pmiops.workbench.model.CohortReview in project workbench by all-of-us.

the class WorkspacesControllerTest method testCloneWorkspaceWithCohorts.

@Test
public void testCloneWorkspaceWithCohorts() throws Exception {
    CdrVersionContext.setCdrVersion(cdrVersion);
    Workspace workspace = createDefaultWorkspace();
    workspace = workspacesController.createWorkspace(workspace).getBody();
    Cohort c1 = createDefaultCohort("c1");
    c1 = cohortsController.createCohort(workspace.getNamespace(), workspace.getId(), c1).getBody();
    Cohort c2 = createDefaultCohort("c2");
    c2 = cohortsController.createCohort(workspace.getNamespace(), workspace.getId(), c2).getBody();
    stubBigQueryCohortCalls();
    CreateReviewRequest reviewReq = new CreateReviewRequest();
    reviewReq.setSize(1);
    CohortReview cr1 = cohortReviewController.createCohortReview(workspace.getNamespace(), workspace.getId(), c1.getId(), cdrVersion.getCdrVersionId(), reviewReq).getBody();
    reviewReq.setSize(2);
    CohortReview cr2 = cohortReviewController.createCohortReview(workspace.getNamespace(), workspace.getId(), c2.getId(), cdrVersion.getCdrVersionId(), reviewReq).getBody();
    stubGetWorkspace(workspace.getNamespace(), workspace.getName(), LOGGED_IN_USER_EMAIL, WorkspaceAccessLevel.OWNER);
    CloneWorkspaceRequest req = new CloneWorkspaceRequest();
    Workspace modWorkspace = new Workspace();
    modWorkspace.setName("cloned");
    modWorkspace.setNamespace("cloned-ns");
    ResearchPurpose modPurpose = new ResearchPurpose();
    modPurpose.setAncestry(true);
    modWorkspace.setResearchPurpose(modPurpose);
    req.setWorkspace(modWorkspace);
    stubGetWorkspace(modWorkspace.getNamespace(), modWorkspace.getName(), LOGGED_IN_USER_EMAIL, WorkspaceAccessLevel.OWNER);
    Workspace cloned = workspacesController.cloneWorkspace(workspace.getNamespace(), workspace.getId(), req).getBody().getWorkspace();
    List<Cohort> cohorts = cohortsController.getCohortsInWorkspace(cloned.getNamespace(), cloned.getId()).getBody().getItems();
    Map<String, Cohort> cohortsByName = Maps.uniqueIndex(cohorts, c -> c.getName());
    assertThat(cohortsByName.keySet()).containsExactlyElementsIn(ImmutableSet.of("c1", "c2"));
    assertThat(cohorts.stream().map(c -> c.getId()).collect(Collectors.toList())).containsNoneOf(c1.getId(), c2.getId());
    CohortReview gotCr1 = cohortReviewController.getParticipantCohortStatuses(cloned.getNamespace(), cloned.getId(), cohortsByName.get("c1").getId(), cdrVersion.getCdrVersionId(), new ParticipantCohortStatuses().pageFilterType(PageFilterType.PARTICIPANTCOHORTSTATUSES)).getBody();
    assertThat(gotCr1.getReviewSize()).isEqualTo(cr1.getReviewSize());
    assertThat(gotCr1.getParticipantCohortStatuses()).isEqualTo(cr1.getParticipantCohortStatuses());
    CohortReview gotCr2 = cohortReviewController.getParticipantCohortStatuses(cloned.getNamespace(), cloned.getId(), cohortsByName.get("c2").getId(), cdrVersion.getCdrVersionId(), new ParticipantCohortStatuses().pageFilterType(PageFilterType.PARTICIPANTCOHORTSTATUSES)).getBody();
    assertThat(gotCr2.getReviewSize()).isEqualTo(cr2.getReviewSize());
    assertThat(gotCr2.getParticipantCohortStatuses()).isEqualTo(cr2.getParticipantCohortStatuses());
    assertThat(ImmutableSet.of(gotCr1.getCohortReviewId(), gotCr2.getCohortReviewId())).containsNoneOf(cr1.getCohortReviewId(), cr2.getCohortId());
}