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Example 1 with ParticipantCohortStatuses

use of org.pmiops.workbench.model.ParticipantCohortStatuses in project workbench by all-of-us.

the class WorkspacesControllerTest method testCloneWorkspaceWithCohorts.

@Test
public void testCloneWorkspaceWithCohorts() throws Exception {
    CdrVersionContext.setCdrVersion(cdrVersion);
    Workspace workspace = createDefaultWorkspace();
    workspace = workspacesController.createWorkspace(workspace).getBody();
    Cohort c1 = createDefaultCohort("c1");
    c1 = cohortsController.createCohort(workspace.getNamespace(), workspace.getId(), c1).getBody();
    Cohort c2 = createDefaultCohort("c2");
    c2 = cohortsController.createCohort(workspace.getNamespace(), workspace.getId(), c2).getBody();
    stubBigQueryCohortCalls();
    CreateReviewRequest reviewReq = new CreateReviewRequest();
    reviewReq.setSize(1);
    CohortReview cr1 = cohortReviewController.createCohortReview(workspace.getNamespace(), workspace.getId(), c1.getId(), cdrVersion.getCdrVersionId(), reviewReq).getBody();
    reviewReq.setSize(2);
    CohortReview cr2 = cohortReviewController.createCohortReview(workspace.getNamespace(), workspace.getId(), c2.getId(), cdrVersion.getCdrVersionId(), reviewReq).getBody();
    stubGetWorkspace(workspace.getNamespace(), workspace.getName(), LOGGED_IN_USER_EMAIL, WorkspaceAccessLevel.OWNER);
    CloneWorkspaceRequest req = new CloneWorkspaceRequest();
    Workspace modWorkspace = new Workspace();
    modWorkspace.setName("cloned");
    modWorkspace.setNamespace("cloned-ns");
    ResearchPurpose modPurpose = new ResearchPurpose();
    modPurpose.setAncestry(true);
    modWorkspace.setResearchPurpose(modPurpose);
    req.setWorkspace(modWorkspace);
    stubGetWorkspace(modWorkspace.getNamespace(), modWorkspace.getName(), LOGGED_IN_USER_EMAIL, WorkspaceAccessLevel.OWNER);
    Workspace cloned = workspacesController.cloneWorkspace(workspace.getNamespace(), workspace.getId(), req).getBody().getWorkspace();
    List<Cohort> cohorts = cohortsController.getCohortsInWorkspace(cloned.getNamespace(), cloned.getId()).getBody().getItems();
    Map<String, Cohort> cohortsByName = Maps.uniqueIndex(cohorts, c -> c.getName());
    assertThat(cohortsByName.keySet()).containsExactlyElementsIn(ImmutableSet.of("c1", "c2"));
    assertThat(cohorts.stream().map(c -> c.getId()).collect(Collectors.toList())).containsNoneOf(c1.getId(), c2.getId());
    CohortReview gotCr1 = cohortReviewController.getParticipantCohortStatuses(cloned.getNamespace(), cloned.getId(), cohortsByName.get("c1").getId(), cdrVersion.getCdrVersionId(), new ParticipantCohortStatuses().pageFilterType(PageFilterType.PARTICIPANTCOHORTSTATUSES)).getBody();
    assertThat(gotCr1.getReviewSize()).isEqualTo(cr1.getReviewSize());
    assertThat(gotCr1.getParticipantCohortStatuses()).isEqualTo(cr1.getParticipantCohortStatuses());
    CohortReview gotCr2 = cohortReviewController.getParticipantCohortStatuses(cloned.getNamespace(), cloned.getId(), cohortsByName.get("c2").getId(), cdrVersion.getCdrVersionId(), new ParticipantCohortStatuses().pageFilterType(PageFilterType.PARTICIPANTCOHORTSTATUSES)).getBody();
    assertThat(gotCr2.getReviewSize()).isEqualTo(cr2.getReviewSize());
    assertThat(gotCr2.getParticipantCohortStatuses()).isEqualTo(cr2.getParticipantCohortStatuses());
    assertThat(ImmutableSet.of(gotCr1.getCohortReviewId(), gotCr2.getCohortReviewId())).containsNoneOf(cr1.getCohortReviewId(), cr2.getCohortId());
}
Also used : DirtiesContext(org.springframework.test.annotation.DirtiesContext) FieldValue(com.google.cloud.bigquery.FieldValue) Provider(javax.inject.Provider) ReviewTabQueryBuilder(org.pmiops.workbench.cohortreview.ReviewTabQueryBuilder) FireCloudService(org.pmiops.workbench.firecloud.FireCloudService) GenderRaceEthnicityType(org.pmiops.workbench.cdr.cache.GenderRaceEthnicityType) Autowired(org.springframework.beans.factory.annotation.Autowired) BlobId(com.google.cloud.storage.BlobId) ShareWorkspaceResponse(org.pmiops.workbench.model.ShareWorkspaceResponse) CohortReviewServiceImpl(org.pmiops.workbench.cohortreview.CohortReviewServiceImpl) PageFilterType(org.pmiops.workbench.model.PageFilterType) DataJpaTest(org.springframework.boot.test.autoconfigure.orm.jpa.DataJpaTest) TestConfiguration(org.springframework.boot.test.context.TestConfiguration) Blob(com.google.cloud.storage.Blob) GenderRaceEthnicityConcept(org.pmiops.workbench.cdr.cache.GenderRaceEthnicityConcept) 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Aggregations

FieldValue (com.google.cloud.bigquery.FieldValue)1 QueryResult (com.google.cloud.bigquery.QueryResult)1 Blob (com.google.cloud.storage.Blob)1 BlobId (com.google.cloud.storage.BlobId)1 ImmutableList (com.google.common.collect.ImmutableList)1 ImmutableMap (com.google.common.collect.ImmutableMap)1 ImmutableSet (com.google.common.collect.ImmutableSet)1 Maps (com.google.common.collect.Maps)1 Truth.assertThat (com.google.common.truth.Truth.assertThat)1 Truth.assertWithMessage (com.google.common.truth.Truth.assertWithMessage)1 Gson (com.google.gson.Gson)1 Timestamp (java.sql.Timestamp)1 Clock (java.time.Clock)1 Instant (java.time.Instant)1 ZoneId (java.time.ZoneId)1 ArrayList (java.util.ArrayList)1 HashMap (java.util.HashMap)1 Iterator (java.util.Iterator)1 List (java.util.List)1 Map (java.util.Map)1