Examples with Workspace org.pmiops.workbench.model.Workspace used on opensource projects

Example 16 with Workspace

use of org.pmiops.workbench.model.Workspace in project workbench by all-of-us.

the class WorkspacesControllerTest method testCloneWorkspaceBadRequest.

@Test(expected = BadRequestException.class)
public void testCloneWorkspaceBadRequest() throws Exception {
    Workspace workspace = createDefaultWorkspace();
    workspace = workspacesController.createWorkspace(workspace).getBody();
    stubGetWorkspace(workspace.getNamespace(), workspace.getName(), LOGGED_IN_USER_EMAIL, WorkspaceAccessLevel.OWNER);
    CloneWorkspaceRequest req = new CloneWorkspaceRequest();
    Workspace modWorkspace = new Workspace();
    modWorkspace.setName("cloned");
    modWorkspace.setNamespace("cloned-ns");
    req.setWorkspace(modWorkspace);
    // Missing research purpose.
    workspacesController.cloneWorkspace(workspace.getNamespace(), workspace.getId(), req);
}

Example 17 with Workspace

use of org.pmiops.workbench.model.Workspace in project workbench by all-of-us.

the class WorkspacesControllerTest method testCloneWorkspaceWithCohorts.

@Test
public void testCloneWorkspaceWithCohorts() throws Exception {
    CdrVersionContext.setCdrVersion(cdrVersion);
    Workspace workspace = createDefaultWorkspace();
    workspace = workspacesController.createWorkspace(workspace).getBody();
    Cohort c1 = createDefaultCohort("c1");
    c1 = cohortsController.createCohort(workspace.getNamespace(), workspace.getId(), c1).getBody();
    Cohort c2 = createDefaultCohort("c2");
    c2 = cohortsController.createCohort(workspace.getNamespace(), workspace.getId(), c2).getBody();
    stubBigQueryCohortCalls();
    CreateReviewRequest reviewReq = new CreateReviewRequest();
    reviewReq.setSize(1);
    CohortReview cr1 = cohortReviewController.createCohortReview(workspace.getNamespace(), workspace.getId(), c1.getId(), cdrVersion.getCdrVersionId(), reviewReq).getBody();
    reviewReq.setSize(2);
    CohortReview cr2 = cohortReviewController.createCohortReview(workspace.getNamespace(), workspace.getId(), c2.getId(), cdrVersion.getCdrVersionId(), reviewReq).getBody();
    stubGetWorkspace(workspace.getNamespace(), workspace.getName(), LOGGED_IN_USER_EMAIL, WorkspaceAccessLevel.OWNER);
    CloneWorkspaceRequest req = new CloneWorkspaceRequest();
    Workspace modWorkspace = new Workspace();
    modWorkspace.setName("cloned");
    modWorkspace.setNamespace("cloned-ns");
    ResearchPurpose modPurpose = new ResearchPurpose();
    modPurpose.setAncestry(true);
    modWorkspace.setResearchPurpose(modPurpose);
    req.setWorkspace(modWorkspace);
    stubGetWorkspace(modWorkspace.getNamespace(), modWorkspace.getName(), LOGGED_IN_USER_EMAIL, WorkspaceAccessLevel.OWNER);
    Workspace cloned = workspacesController.cloneWorkspace(workspace.getNamespace(), workspace.getId(), req).getBody().getWorkspace();
    List<Cohort> cohorts = cohortsController.getCohortsInWorkspace(cloned.getNamespace(), cloned.getId()).getBody().getItems();
    Map<String, Cohort> cohortsByName = Maps.uniqueIndex(cohorts, c -> c.getName());
    assertThat(cohortsByName.keySet()).containsExactlyElementsIn(ImmutableSet.of("c1", "c2"));
    assertThat(cohorts.stream().map(c -> c.getId()).collect(Collectors.toList())).containsNoneOf(c1.getId(), c2.getId());
    CohortReview gotCr1 = cohortReviewController.getParticipantCohortStatuses(cloned.getNamespace(), cloned.getId(), cohortsByName.get("c1").getId(), cdrVersion.getCdrVersionId(), new ParticipantCohortStatuses().pageFilterType(PageFilterType.PARTICIPANTCOHORTSTATUSES)).getBody();
    assertThat(gotCr1.getReviewSize()).isEqualTo(cr1.getReviewSize());
    assertThat(gotCr1.getParticipantCohortStatuses()).isEqualTo(cr1.getParticipantCohortStatuses());
    CohortReview gotCr2 = cohortReviewController.getParticipantCohortStatuses(cloned.getNamespace(), cloned.getId(), cohortsByName.get("c2").getId(), cdrVersion.getCdrVersionId(), new ParticipantCohortStatuses().pageFilterType(PageFilterType.PARTICIPANTCOHORTSTATUSES)).getBody();
    assertThat(gotCr2.getReviewSize()).isEqualTo(cr2.getReviewSize());
    assertThat(gotCr2.getParticipantCohortStatuses()).isEqualTo(cr2.getParticipantCohortStatuses());
    assertThat(ImmutableSet.of(gotCr1.getCohortReviewId(), gotCr2.getCohortReviewId())).containsNoneOf(cr1.getCohortReviewId(), cr2.getCohortId());
}

Example 18 with Workspace

use of org.pmiops.workbench.model.Workspace in project workbench by all-of-us.

the class WorkspacesControllerTest method testUnableToShareWithNonExistentUser.

@Test(expected = BadRequestException.class)
public void testUnableToShareWithNonExistentUser() throws Exception {
    Workspace workspace = createDefaultWorkspace();
    workspacesController.createWorkspace(workspace);
    ShareWorkspaceRequest shareWorkspaceRequest = new ShareWorkspaceRequest();
    UserRole creator = new UserRole();
    creator.setEmail(LOGGED_IN_USER_EMAIL);
    creator.setRole(WorkspaceAccessLevel.OWNER);
    shareWorkspaceRequest.addItemsItem(creator);
    UserRole writer = new UserRole();
    writer.setEmail("writerfriend@gmail.com");
    writer.setRole(WorkspaceAccessLevel.WRITER);
    shareWorkspaceRequest.addItemsItem(writer);
    workspacesController.shareWorkspace(workspace.getNamespace(), workspace.getName(), shareWorkspaceRequest);
}

Example 19 with Workspace

use of org.pmiops.workbench.model.Workspace in project workbench by all-of-us.

the class WorkspacesControllerTest method testUpdateWorkspaceStaleThrows.

@Test(expected = ConflictException.class)
public void testUpdateWorkspaceStaleThrows() throws Exception {
    Workspace ws = createDefaultWorkspace();
    ws = workspacesController.createWorkspace(ws).getBody();
    UpdateWorkspaceRequest request = new UpdateWorkspaceRequest();
    request.setWorkspace(new Workspace().name("updated-name").etag(ws.getEtag()));
    stubGetWorkspace(ws.getNamespace(), ws.getId(), ws.getCreator(), WorkspaceAccessLevel.OWNER);
    workspacesController.updateWorkspace(ws.getNamespace(), ws.getId(), request).getBody();
    // Still using the initial now-stale etag; this should throw.
    stubGetWorkspace(ws.getNamespace(), ws.getId(), ws.getCreator(), WorkspaceAccessLevel.OWNER);
    request.setWorkspace(new Workspace().name("updated-name2").etag(ws.getEtag()));
    workspacesController.updateWorkspace(ws.getNamespace(), ws.getId(), request).getBody();
}

Example 20 with Workspace

use of org.pmiops.workbench.model.Workspace in project workbench by all-of-us.

the class WorkspacesControllerTest method testUpdateWorkspace.

@Test
public void testUpdateWorkspace() throws Exception {
    Workspace ws = createDefaultWorkspace();
    ws = workspacesController.createWorkspace(ws).getBody();
    ws.setName("updated-name");
    stubGetWorkspace(ws.getNamespace(), ws.getId(), ws.getCreator(), WorkspaceAccessLevel.OWNER);
    UpdateWorkspaceRequest request = new UpdateWorkspaceRequest();
    request.setWorkspace(ws);
    Workspace updated = workspacesController.updateWorkspace(ws.getNamespace(), ws.getId(), request).getBody();
    ws.setEtag(updated.getEtag());
    assertThat(updated).isEqualTo(ws);
    ws.setName("updated-name2");
    stubGetWorkspace(ws.getNamespace(), ws.getId(), ws.getCreator(), WorkspaceAccessLevel.OWNER);
    updated = workspacesController.updateWorkspace(ws.getNamespace(), ws.getId(), request).getBody();
    ws.setEtag(updated.getEtag());
    assertThat(updated).isEqualTo(ws);
    stubGetWorkspace(ws.getNamespace(), ws.getId(), ws.getCreator(), WorkspaceAccessLevel.OWNER);
    Workspace got = workspacesController.getWorkspace(ws.getNamespace(), ws.getId()).getBody().getWorkspace();
    assertThat(got).isEqualTo(ws);
}