Examples with SimulationStatusRepresentation org.vcell.rest.common.SimulationStatusRepresentation used on opensource projects

Example 1 with SimulationStatusRepresentation

use of org.vcell.rest.common.SimulationStatusRepresentation in project vcell by virtualcell.

the class RestDatabaseService method query.

public SimulationStatusRepresentation[] query(SimulationStatusServerResource resource, User vcellUser) throws SQLException, DataAccessException {
    if (vcellUser == null) {
        vcellUser = VCellApiApplication.DUMMY_USER;
    }
    String userID = vcellUser.getName();
    SimpleJobStatusQuerySpec simQuerySpec = new SimpleJobStatusQuerySpec();
    simQuerySpec.userid = userID;
    simQuerySpec.simId = resource.getLongQueryValue(SimulationStatusServerResource.PARAM_SIM_ID);
    String hasData = resource.getQueryValue(SimulationStatusServerResource.PARAM_HAS_DATA);
    if (hasData != null && hasData.equals("yes")) {
        simQuerySpec.hasData = true;
    } else if (hasData != null && hasData.equals("no")) {
        simQuerySpec.hasData = false;
    } else {
        simQuerySpec.hasData = null;
    }
    simQuerySpec.waiting = resource.getBooleanQueryValue(SimulationStatusServerResource.PARAM_STATUS_ACTIVE, false);
    simQuerySpec.queued = resource.getBooleanQueryValue(SimulationStatusServerResource.PARAM_STATUS_ACTIVE, false);
    simQuerySpec.dispatched = resource.getBooleanQueryValue(SimulationStatusServerResource.PARAM_STATUS_ACTIVE, false);
    simQuerySpec.running = resource.getBooleanQueryValue(SimulationStatusServerResource.PARAM_STATUS_ACTIVE, false);
    simQuerySpec.completed = resource.getBooleanQueryValue(SimulationStatusServerResource.PARAM_STATUS_COMPLETED, false);
    simQuerySpec.failed = resource.getBooleanQueryValue(SimulationStatusServerResource.PARAM_STATUS_FAILED, false);
    simQuerySpec.stopped = resource.getBooleanQueryValue(SimulationStatusServerResource.PARAM_STATUS_STOPPED, false);
    simQuerySpec.submitLowMS = resource.getLongQueryValue(SimulationStatusServerResource.PARAM_SUBMIT_LOW);
    simQuerySpec.submitHighMS = resource.getLongQueryValue(SimulationStatusServerResource.PARAM_SUBMIT_HIGH);
    simQuerySpec.startLowMS = resource.getLongQueryValue(SimulationStatusServerResource.PARAM_START_LOW);
    simQuerySpec.startHighMS = resource.getLongQueryValue(SimulationStatusServerResource.PARAM_START_HIGH);
    simQuerySpec.endLowMS = resource.getLongQueryValue(SimulationStatusServerResource.PARAM_END_LOW);
    simQuerySpec.endHighMS = resource.getLongQueryValue(SimulationStatusServerResource.PARAM_END_HIGH);
    Long startRowParam = resource.getLongQueryValue(SimulationStatusServerResource.PARAM_START_ROW);
    // default
    simQuerySpec.startRow = 1;
    if (startRowParam != null) {
        simQuerySpec.startRow = startRowParam.intValue();
    }
    Long maxRowsParam = resource.getLongQueryValue(SimulationTasksServerResource.PARAM_MAX_ROWS);
    // default
    simQuerySpec.maxRows = 10;
    if (maxRowsParam != null) {
        simQuerySpec.maxRows = maxRowsParam.intValue();
    }
    SimulationStatus[] simStatuses = null;
    HashMap<KeyValue, SimulationDocumentLink> simDocLinks = new HashMap<KeyValue, SimulationDocumentLink>();
    // 
    // ask server for simJobStatuses with above query spec.
    // find set of simulation IDs from the result set of simJobStatus
    // ask server for simulationStatuses from list of sim IDs.
    // 
    VCMessageSession rpcSession = vcMessagingService.createProducerSession();
    try {
        UserLoginInfo userLoginInfo = new UserLoginInfo(vcellUser.getName(), null);
        try {
            userLoginInfo.setUser(vcellUser);
        } catch (Exception e) {
            e.printStackTrace();
            throw new DataAccessException(e.getMessage());
        }
        RpcSimServerProxy rpcSimServerProxy = new RpcSimServerProxy(userLoginInfo, rpcSession);
        SimpleJobStatus[] simpleJobStatusArray = rpcSimServerProxy.getSimpleJobStatus(vcellUser, simQuerySpec);
        // gather unique simIDs and go back and ask server for SimulationStatuses
        for (SimpleJobStatus simpleJobStatus : simpleJobStatusArray) {
            KeyValue simulationKey = simpleJobStatus.jobStatus.getVCSimulationIdentifier().getSimulationKey();
            SimulationDocumentLink simulationDocumentLink = simpleJobStatus.simulationDocumentLink;
            simDocLinks.put(simulationKey, simulationDocumentLink);
        }
        KeyValue[] simKeys = simDocLinks.keySet().toArray(new KeyValue[0]);
        if (simKeys.length > 0) {
            simStatuses = rpcSimServerProxy.getSimulationStatus(vcellUser, simKeys);
        }
    } finally {
        rpcSession.close();
    }
    ArrayList<SimulationStatusRepresentation> simStatusReps = new ArrayList<SimulationStatusRepresentation>();
    for (int i = 0; simStatuses != null && i < simStatuses.length; i++) {
        KeyValue simulationKey = simStatuses[i].getVCSimulationIdentifier().getSimulationKey();
        SimulationRep simRep = getSimulationRep(simulationKey);
        try {
            SimulationRepresentation simRepresentation = new SimulationRepresentation(simRep, simDocLinks.get(simulationKey));
            simStatusReps.add(new SimulationStatusRepresentation(simRepresentation, simStatuses[i]));
        } catch (ExpressionException e) {
            e.printStackTrace(System.out);
        }
    }
    return simStatusReps.toArray(new SimulationStatusRepresentation[0]);
}

Example 2 with SimulationStatusRepresentation

use of org.vcell.rest.common.SimulationStatusRepresentation in project vcell by virtualcell.

the class SimulationStatusServerResource method get_html.

@Override
public Representation get_html() {
    VCellApiApplication application = ((VCellApiApplication) getApplication());
    User vcellUser = application.getVCellUser(getChallengeResponse(), AuthenticationPolicy.ignoreInvalidCredentials);
    SimulationStatusRepresentation[] simStatuses = getSimulationStatusRepresentations(vcellUser);
    Map<String, Object> dataModel = new HashMap<String, Object>();
    // +"?"+VCellApiApplication.REDIRECTURL_FORMNAME+"="+getRequest().getResourceRef().toUrl());
    dataModel.put("loginurl", "/" + VCellApiApplication.LOGINFORM);
    dataModel.put("logouturl", "/" + VCellApiApplication.LOGOUT + "?" + VCellApiApplication.REDIRECTURL_FORMNAME + "=" + Reference.encode(getRequest().getResourceRef().toUrl().toString()));
    if (vcellUser != null) {
        dataModel.put("userid", vcellUser.getName());
    }
    dataModel.put("userId", getAttribute(PARAM_USER));
    dataModel.put("simId", getQueryValue(PARAM_SIM_ID));
    dataModel.put("hasData", getQueryValue(PARAM_HAS_DATA));
    dataModel.put("neverran", getBooleanQueryValue(PARAM_STATUS_NEVERRAN, false));
    dataModel.put("active", getBooleanQueryValue(PARAM_STATUS_ACTIVE, false));
    dataModel.put("completed", getBooleanQueryValue(PARAM_STATUS_COMPLETED, false));
    dataModel.put("failed", getBooleanQueryValue(PARAM_STATUS_FAILED, false));
    dataModel.put("stopped", getBooleanQueryValue(PARAM_STATUS_STOPPED, false));
    dataModel.put("submitLow", getLongQueryValue(PARAM_SUBMIT_LOW));
    dataModel.put("submitHigh", getLongQueryValue(PARAM_SUBMIT_HIGH));
    dataModel.put("startLow", getLongQueryValue(PARAM_START_LOW));
    dataModel.put("startHigh", getLongQueryValue(PARAM_START_HIGH));
    dataModel.put("endLow", getLongQueryValue(PARAM_END_LOW));
    dataModel.put("endHigh", getLongQueryValue(PARAM_END_HIGH));
    Long startRowParam = getLongQueryValue(PARAM_START_ROW);
    if (startRowParam != null) {
        dataModel.put("startRow", startRowParam);
    } else {
        dataModel.put("startRow", 1);
    }
    Long maxRowsParam = getLongQueryValue(PARAM_MAX_ROWS);
    if (maxRowsParam != null) {
        dataModel.put("maxRows", maxRowsParam);
    } else {
        dataModel.put("maxRows", 10);
    }
    dataModel.put("simStatuses", Arrays.asList(simStatuses));
    Gson gson = new Gson();
    dataModel.put("jsonResponse", gson.toJson(simStatuses));
    Configuration templateConfiguration = application.getTemplateConfiguration();
    Representation formFtl = new ClientResource(LocalReference.createClapReference("/simulationStatus.ftl")).get();
    TemplateRepresentation templateRepresentation = new TemplateRepresentation(formFtl, templateConfiguration, dataModel, MediaType.TEXT_HTML);
    return templateRepresentation;
}