Examples with User org.vcell.util.document.User used on opensource projects

Example 21 with User

use of org.vcell.util.document.User in project vcell by virtualcell.

the class VCComprehensiveStatistics method collectBioModelStats.

private void collectBioModelStats(long startDateInMs, long endDateInMs) throws DataAccessException {
    retrieveUsers();
    List<String> internalDeveloper = Arrays.asList(VCComprehensiveStatistics.INTERNAL_DEVELOPERS);
    for (User user : userList) {
        if (!userConstraintList.contains(user.getName())) {
            continue;
        }
        if (!internalDeveloper.contains(user.getName())) {
            boolean bInternal = internalUsers.contains(user.getName());
            ModelStat modelStat = bioModelStats[bInternal ? 0 : 1];
            BioModelInfo[] bioModelInfos = dbServerImpl.getBioModelInfos(user, false);
            for (BioModelInfo bmi : bioModelInfos) {
                Date createDate = bmi.getVersion().getDate();
                long t = createDate.getTime();
                // }
                if (t < startDateInMs || t > endDateInMs) {
                    continue;
                }
                // modelStat.count_model ++;
                try {
                    BigString bioModelXML = dbServerImpl.getBioModelXML(user, bmi.getVersion().getVersionKey());
                    BioModel bioModel = (BioModel) waitForModel(bioModelXML, false);
                    if (bioModel == null) {
                        System.out.println("----------          Skipped BioModel " + bmi.getVersion() + "          ----------");
                        continue;
                    }
                    modelStat.count_model++;
                    for (SimulationContext simContext : bioModel.getSimulationContexts()) {
                        modelStat.count_geoDimApplications[simContext.getGeometry().getDimension()]++;
                        if (simContext.isStoch()) {
                            modelStat.count_app_stochastic++;
                        } else {
                            modelStat.count_app_deterministic++;
                        }
                    }
                    boolean bHasCompletedSim = false;
                    for (Simulation sim : bioModel.getSimulations()) {
                        SimulationStatusPersistent ss = dbServerImpl.getSimulationStatus(sim.getKey());
                        if (ss != null) {
                            for (int scan = 0; scan < sim.getScanCount(); scan++) {
                                SimulationJobStatusPersistent jobStatus = ss.getJobStatus(scan);
                                if (jobStatus != null) {
                                    if (jobStatus.getSchedulerStatus() == SchedulerStatus.COMPLETED) {
                                        bHasCompletedSim = true;
                                        long elapsed = jobStatus.getEndDate().getTime() - jobStatus.getStartDate().getTime();
                                        if (elapsed < 2 * MINUTE_IN_MS) {
                                            modelStat.runningTimeHistogram[0]++;
                                        } else if (elapsed < 5 * MINUTE_IN_MS) {
                                            modelStat.runningTimeHistogram[1]++;
                                        } else if (elapsed < 20 * MINUTE_IN_MS) {
                                            modelStat.runningTimeHistogram[2]++;
                                        } else if (elapsed < HOUR_IN_MS) {
                                            modelStat.runningTimeHistogram[3]++;
                                        } else if (elapsed < DAY_IN_MS) {
                                            modelStat.runningTimeHistogram[4]++;
                                        } else {
                                            modelStat.runningTimeHistogram[5]++;
                                        }
                                    }
                                    int dimension = sim.getMathDescription().getGeometry().getDimension();
                                    modelStat.count_geoDimSim[dimension]++;
                                    if (sim.getMathDescription().isNonSpatialStoch() || sim.getMathDescription().isSpatialStoch()) {
                                        modelStat.count_sim_stochastic++;
                                    } else {
                                        modelStat.count_sim_deterministic++;
                                    }
                                    if (dimension > 0) {
                                        if (sim.getSolverTaskDescription().getSolverDescription().isSemiImplicitPdeSolver()) {
                                            modelStat.count_semiSim++;
                                        } else {
                                            modelStat.count_fullySim++;
                                        }
                                    }
                                }
                            }
                        }
                    }
                    if (bHasCompletedSim) {
                        modelStat.count_model_simcomplete++;
                    }
                } catch (Exception e2) {
                    e2.printStackTrace(System.out);
                }
            }
        }
    }
    itemCount++;
    statOutputPW.println(itemCount + ". BioModel Statistics ");
    statOutputPW.println("====================================================");
    for (ModelStat modelStat : bioModelStats) {
        statOutputPW.println("\t" + modelStat.title);
        statOutputPW.println("========================================");
        statOutputPW.println("number of biomodels saved :\t" + modelStat.count_model);
        statOutputPW.println("number of biomodels that has at least 1 completed simulation :\t" + modelStat.count_model_simcomplete);
        statOutputPW.println();
        statOutputPW.println("Application statistics :");
        statOutputPW.println("number of application ODE :\t" + modelStat.count_geoDimApplications[0]);
        statOutputPW.println("number of application 1D :\t" + modelStat.count_geoDimApplications[1]);
        statOutputPW.println("number of application 2D :\t" + modelStat.count_geoDimApplications[2]);
        statOutputPW.println("number of application 3D :\t" + modelStat.count_geoDimApplications[3]);
        statOutputPW.println("number of application stochastic :\t" + modelStat.count_app_stochastic);
        statOutputPW.println("number of application deterministic :\t" + modelStat.count_app_deterministic);
        statOutputPW.println();
        statOutputPW.println("Simulation statistics (including all simulations (stopped, failed, completed) :");
        statOutputPW.println("number of run simulation ODE :\t" + modelStat.count_geoDimSim[0]);
        statOutputPW.println("number of run simulation 1D :\t" + modelStat.count_geoDimSim[1]);
        statOutputPW.println("number of run simulation 2D :\t" + modelStat.count_geoDimSim[2]);
        statOutputPW.println("number of run simulation 3D :\t" + modelStat.count_geoDimSim[3]);
        statOutputPW.println("number of run simulation Semi-Implicit :\t" + modelStat.count_semiSim);
        statOutputPW.println("number of run simulation Fully-Implicit :\t" + modelStat.count_fullySim);
        statOutputPW.println("number of run simulation stochastic :\t" + modelStat.count_sim_stochastic);
        statOutputPW.println("number of run simulation deterministic :\t" + modelStat.count_sim_deterministic);
        statOutputPW.println();
        statOutputPW.println("Running time histogram for completed simulations only:");
        statOutputPW.println("0 ~ 2min:\t" + modelStat.runningTimeHistogram[0]);
        statOutputPW.println("2 ~ 5min:\t" + modelStat.runningTimeHistogram[1]);
        statOutputPW.println("5 ~ 20min:\t" + modelStat.runningTimeHistogram[2]);
        statOutputPW.println("20min ~ 1hr:\t" + modelStat.runningTimeHistogram[3]);
        statOutputPW.println("1hr ~ 1day:\t" + modelStat.runningTimeHistogram[4]);
        statOutputPW.println(">1day:\t" + modelStat.runningTimeHistogram[5]);
        statOutputPW.println();
        statOutputPW.println();
        statOutputPW.flush();
    }
}

Example 22 with User

use of org.vcell.util.document.User in project vcell by virtualcell.

the class NewName method run.

/**
 * Insert the method's description here.
 * Creation date: (5/31/2004 6:04:14 PM)
 * @param hashTable java.util.Hashtable
 * @param clientWorker cbit.vcell.desktop.controls.ClientWorker
 */
public void run(Hashtable<String, Object> hashTable) throws java.lang.Exception {
    DocumentWindowManager documentWindowManager = (DocumentWindowManager) hashTable.get(CommonTask.DOCUMENT_WINDOW_MANAGER.name);
    if (documentWindowManager.getUser() == null || User.isGuest(documentWindowManager.getUser().getName())) {
        throw new IllegalArgumentException(User.createGuestErrorMessage("saveNewDocument"));
    }
    VCDocument document = documentWindowManager.getVCDocument();
    if (document.getDocumentType() == VCDocumentType.MATHMODEL_DOC) {
        if (((MathModelWindowManager) documentWindowManager).hasUnappliedChanges()) {
            String msg = "Changes have been made in VCML Editor, please click \"Apply Changes\" or \"Cancel\" to proceed.";
            PopupGenerator.showErrorDialog(documentWindowManager, msg);
            throw UserCancelException.CANCEL_UNAPPLIED_CHANGES;
        }
    }
    MDIManager mdiManager = (MDIManager) hashTable.get("mdiManager");
    String oldName = document.getName();
    User user = mdiManager.getFocusedWindowManager().getRequestManager().getDocumentManager().getUser();
    DocumentManager documentManager = mdiManager.getFocusedWindowManager().getRequestManager().getDocumentManager();
    VCDocumentInfo[] vcDocumentInfos = new VCDocumentInfo[0];
    String documentTypeDescription = "unknown";
    if (document.getDocumentType() == VCDocumentType.MATHMODEL_DOC) {
        documentTypeDescription = "MathModel";
        vcDocumentInfos = documentManager.getMathModelInfos();
    } else if (document.getDocumentType() == VCDocumentType.BIOMODEL_DOC) {
        documentTypeDescription = "BioModel";
        vcDocumentInfos = documentManager.getBioModelInfos();
    } else if (document.getDocumentType() == VCDocumentType.GEOMETRY_DOC) {
        documentTypeDescription = "Geometry";
        vcDocumentInfos = documentManager.getGeometryInfos();
    }
    String newDocumentName = (oldName == null ? "New" + documentTypeDescription : oldName);
    while (true) {
        newDocumentName = mdiManager.getDatabaseWindowManager().showSaveDialog(document.getDocumentType(), (Component) hashTable.get("currentDocumentWindow"), newDocumentName);
        if (newDocumentName == null || newDocumentName.trim().length() == 0) {
            newDocumentName = null;
            DialogUtils.showWarningDialog((Component) hashTable.get("currentDocumentWindow"), "New " + documentTypeDescription + " name cannot be empty.");
            continue;
        }
        // Check name conflict
        boolean bNameConflict = false;
        for (int i = 0; i < vcDocumentInfos.length; i++) {
            if (vcDocumentInfos[i].getVersion().getOwner().compareEqual(user)) {
                if (vcDocumentInfos[i].getVersion().getName().equals(newDocumentName)) {
                    bNameConflict = true;
                    break;
                }
            }
        }
        if (bNameConflict) {
            DialogUtils.showWarningDialog((Component) hashTable.get("currentDocumentWindow"), "A " + documentTypeDescription + " with name '" + newDocumentName + "' already exists.  Choose a different name.");
            continue;
        } else {
            break;
        }
    }
    hashTable.put("newName", newDocumentName);
}

Example 23 with User

use of org.vcell.util.document.User in project vcell by virtualcell.

the class VCellClientDataServiceImpl method getVtkManager.

@Override
public VtkManager getVtkManager(SimulationDataSetRef simulationDataSetRef) throws FileNotFoundException, DataAccessException {
    VCSimulationDataIdentifier vcSimulationDataIdentifier = getVCSimulationDataIdentifier(simulationDataSetRef);
    VtkManager vtkManager = null;
    if (!simulationDataSetRef.isLocal) {
        vtkManager = vcellClient.getRequestManager().getVtkManager(null, vcSimulationDataIdentifier);
    } else {
        // ---- preliminary : construct the localDatasetControllerProvider
        File primaryDir = ResourceUtil.getLocalRootDir();
        User usr = User.tempUser;
        DataSetControllerImpl dataSetControllerImpl = new DataSetControllerImpl(null, primaryDir, null);
        ExportServiceImpl localExportServiceImpl = new ExportServiceImpl();
        LocalDataSetControllerProvider localDSCProvider = new LocalDataSetControllerProvider(usr, dataSetControllerImpl, localExportServiceImpl);
        VCDataManager vcDataManager = new VCDataManager(localDSCProvider);
        vtkManager = new VtkManager(null, vcDataManager, vcSimulationDataIdentifier);
    }
    return vtkManager;
}

Example 24 with User

use of org.vcell.util.document.User in project vcell by virtualcell.

the class DocumentWindow method updateConnectionStatus.

/**
 * Insert the method's description here.
 * Creation date: (5/10/2004 4:32:17 PM)
 */
public void updateConnectionStatus(ConnectionStatus connStatus) {
    // other updates
    String status = "";
    User user = getWindowManager().getUser();
    boolean isTestUser = (user != null) ? (user.isTestAccount()) : (false);
    switch(connStatus.getStatus()) {
        case ConnectionStatus.NOT_CONNECTED:
            {
                status = "";
                getJProgressBarConnection().setString("NOT CONNECTED");
                getJProgressBarConnection().setValue(0);
                getChange_UserMenuItem().setEnabled(true);
                getUpdate_UserMenuItem().setEnabled(false);
                getReconnectMenuItem().setEnabled(false);
                getViewJobsMenuItem().setEnabled(false);
                enableOpenMenuItems(false);
                getSaveMenuItem().setEnabled(false);
                getSave_AsMenuItem().setEnabled(false);
                getSave_AsLocalMenuItem().setEnabled(true);
                getSave_VersionMenuItem().setEnabled(false);
                getJMenuItemRevert().setEnabled(false);
                getJMenuItemCompare().setEnabled(false);
                // getJMenuItemServer().setEnabled(true);
                getTestingFrameworkMenuItem().setVisible(isTestUser);
                getTestingFrameworkMenuItem().setEnabled(false);
                getJMenuItemFieldData().setEnabled(false);
                getPermissionsMenuItem().setEnabled(false);
                getGrantPermissionsToVCellSupportMenuItem().setEnabled(false);
                checkForReconnecting(connStatus);
                break;
            }
        case ConnectionStatus.CONNECTED:
            {
                status = "Server: " + connStatus.getApihost() + ":" + connStatus.getApiport() + " User: " + connStatus.getUserName();
                getJProgressBarConnection().setString("CONNECTED (" + connStatus.getUserName() + ")");
                getJProgressBarConnection().setValue(100);
                getChange_UserMenuItem().setEnabled(true);
                getUpdate_UserMenuItem().setEnabled(true);
                getReconnectMenuItem().setEnabled(true);
                getViewJobsMenuItem().setEnabled(true);
                enableOpenMenuItems(true);
                boolean bVersionedDocument = getWindowManager() != null && getWindowManager().getVCDocument() != null && getWindowManager().getVCDocument().getVersion() != null;
                getSaveMenuItem().setEnabled(bVersionedDocument && !(getWindowManager().getVCDocument().getVersion().getFlag().compareEqual(VersionFlag.Archived) || getWindowManager().getVCDocument().getVersion().getFlag().compareEqual(VersionFlag.Published)));
                getSave_AsMenuItem().setEnabled(true);
                getSave_AsLocalMenuItem().setEnabled(true);
                getSave_VersionMenuItem().setEnabled(bVersionedDocument);
                getJMenuItemRevert().setEnabled(bVersionedDocument);
                getJMenuItemCompare().setEnabled(bVersionedDocument);
                // getJMenuItemServer().setEnabled(true);
                getTestingFrameworkMenuItem().setVisible(isTestUser);
                getTestingFrameworkMenuItem().setEnabled(true);
                getJMenuItemFieldData().setEnabled(true);
                // getJMenuItemMIRIAM().setEnabled(true);
                getJMenuItemPreferences().setEnabled(true);
                getTransMAMenuItem().setEnabled(getWindowManager() != null && getWindowManager().getVCDocument() != null && getWindowManager().getVCDocument() instanceof BioModel);
                getViewJobsMenuItem().setEnabled(true);
                // getJMenuImportPathway().setEnabled(getWindowManager().getVCDocument() instanceof BioModel);
                getPermissionsMenuItem().setEnabled(bVersionedDocument && getWindowManager().getVCDocument().getVersion().getOwner().equals(getWindowManager().getUser()));
                getGrantPermissionsToVCellSupportMenuItem().setEnabled(bVersionedDocument && getWindowManager().getVCDocument().getVersion().getOwner().equals(getWindowManager().getUser()));
                break;
            }
        case ConnectionStatus.INITIALIZING:
            {
                status = "Server: " + connStatus.getApihost() + ":" + connStatus.getApiport() + " User: " + connStatus.getUserName();
                getJProgressBarConnection().setString("INITIALIZING...");
                getJProgressBarConnection().setValue(0);
                getChange_UserMenuItem().setEnabled(false);
                getUpdate_UserMenuItem().setEnabled(false);
                getReconnectMenuItem().setEnabled(false);
                enableOpenMenuItems(false);
                getSave_AsLocalMenuItem().setEnabled(true);
                getSaveMenuItem().setEnabled(false);
                getSave_AsMenuItem().setEnabled(false);
                getSave_AsLocalMenuItem().setEnabled(true);
                getSave_VersionMenuItem().setEnabled(false);
                getJMenuItemRevert().setEnabled(false);
                getJMenuItemCompare().setEnabled(false);
                // getJMenuItemServer().setEnabled(false);
                getTestingFrameworkMenuItem().setVisible(isTestUser);
                getTestingFrameworkMenuItem().setEnabled(isTestUser);
                getJMenuItemFieldData().setEnabled(false);
                // getJMenuItemMIRIAM().setEnabled(false);
                getJMenuItemPreferences().setEnabled(false);
                getPermissionsMenuItem().setEnabled(false);
                getGrantPermissionsToVCellSupportMenuItem().setEnabled(false);
                break;
            }
        case ConnectionStatus.DISCONNECTED:
            {
                status = "Server: " + connStatus.getApihost() + ":" + connStatus.getApiport() + " User: " + connStatus.getUserName();
                getJProgressBarConnection().setString("DISCONNECTED");
                getJProgressBarConnection().setValue(0);
                getChange_UserMenuItem().setEnabled(true);
                getUpdate_UserMenuItem().setEnabled(false);
                getReconnectMenuItem().setEnabled(true);
                enableOpenMenuItems(false);
                getSave_AsLocalMenuItem().setEnabled(true);
                getSaveMenuItem().setEnabled(false);
                getSave_AsMenuItem().setEnabled(false);
                getSave_VersionMenuItem().setEnabled(false);
                getJMenuItemRevert().setEnabled(false);
                getJMenuItemCompare().setEnabled(false);
                // getJMenuItemServer().setEnabled(true);
                getTestingFrameworkMenuItem().setVisible(isTestUser);
                getTestingFrameworkMenuItem().setEnabled(false);
                getJMenuItemFieldData().setEnabled(false);
                // getJMenuItemMIRIAM().setEnabled(false);
                getJMenuItemPreferences().setEnabled(false);
                getPermissionsMenuItem().setEnabled(false);
                getGrantPermissionsToVCellSupportMenuItem().setEnabled(false);
                checkForReconnecting(connStatus);
                break;
            }
    }
    getJProgressBarConnection().setToolTipText(status);
}

Example 25 with User

use of org.vcell.util.document.User in project vcell by virtualcell.

the class MathModelCellRenderer method getTreeCellRendererComponent.

/**
 * Insert the method's description here.
 * Creation date: (7/27/2000 6:41:57 PM)
 * @return java.awt.Component
 */
public java.awt.Component getTreeCellRendererComponent(JTree tree, Object value, boolean sel, boolean expanded, boolean leaf, int row, boolean hasFocus) {
    JLabel component = (JLabel) super.getTreeCellRendererComponent(tree, value, sel, expanded, leaf, row, hasFocus);
    // 
    try {
        if (value instanceof UserNameNode) {
            UserNameNode node = (UserNameNode) value;
            String label = (String) node.getUserObject();
            String qualifier = "";
            if (sessionUser != null && sessionUser.getName().contentEquals(label)) {
                String colorString = (sel) ? "white" : "#8B0000";
                qualifier = "<font color=\"" + colorString + "\"><b>" + label + "</b></font>";
            } else {
                String colorString = (sel) ? "white" : "black";
                qualifier = "<font color=\"" + colorString + "\">" + label + "</font>";
            }
            component.setToolTipText(label);
            component.setText("<html>" + qualifier + " (" + node.getChildCount() + ")" + "</html>");
            component.setIcon(fieldFolderUserIcon);
        } else if (value instanceof PublicationInfoNode) {
            BioModelNode node = (PublicationInfoNode) value;
            PublicationInfo pi = (PublicationInfo) node.getUserObject();
            String label = pi.getTitle();
            String name = "";
            if (pi.getAuthors() != null && pi.getAuthors().length > 0) {
                name = pi.getAuthors()[0];
            }
            if (name.contains(",")) {
                name = name.substring(0, name.indexOf(","));
            }
            int year = Integer.parseInt((new SimpleDateFormat("yyyy")).format(pi.getPubDate()));
            String label2 = name + " " + year + " " + label;
            int maxLen = MaxPublicationLabelLength + (node.getChildCount() > 1 ? 0 : 4);
            if (label2.length() > maxLen) {
                label2 = label2.substring(0, maxLen) + "...";
            }
            if (node.getChildCount() > 1) {
                String prefix = sel ? "" : "<span style=\"color:#8B0000\">";
                String suffix = sel ? "" : "</span>";
                label += prefix + " (" + node.getChildCount() + ")" + suffix;
                label2 += prefix + " (" + node.getChildCount() + ")" + suffix;
            }
            component.setText("<html>" + label2 + "</html>");
            component.setToolTipText("<html>" + label + "</html>");
            if (pi.getPubDate().compareTo(Calendar.getInstance().getTime()) > 0) {
                // sanity check
                setIcon(fieldFolderWarningIcon);
            } else if (pi.getDoi() == null) {
                setIcon(fieldFolderWarningIcon);
            } else if (name.contains(" ")) {
                setIcon(fieldFolderWarningIcon);
            } else {
                // publications have their own icon
                setIcon(fieldPublishedPublicationIcon);
            }
        } else if (value instanceof BioModelNode) {
            BioModelNode node = (BioModelNode) value;
            Object userObject = node.getUserObject();
            if (userObject instanceof User) {
                String label = null;
                if (sessionUser != null && sessionUser.compareEqual((User) userObject)) {
                    label = "My MathModels (" + ((User) userObject).getName() + ") (" + node.getChildCount() + ")";
                } else {
                    label = ((User) userObject).getName() + "                             ";
                }
                component.setToolTipText(label);
                component.setText(label);
            } else if (userObject instanceof MathModelInfo) {
                // a math model version
                MathModelInfo mathModelInfo = (MathModelInfo) userObject;
                if (mathModelInfo.getPublicationInfos() != null && mathModelInfo.getPublicationInfos().length > 0) {
                    if (mathModelInfo.getVersion().getFlag().compareEqual(org.vcell.util.document.VersionFlag.Published)) {
                        component.setText("(Published) " + component.getText());
                    } else {
                        component.setText("(Curated) " + component.getText());
                    }
                } else if (mathModelInfo.getVersion().getFlag().compareEqual(org.vcell.util.document.VersionFlag.Archived)) {
                    component.setText("(Archived) " + component.getText());
                }
                String str = component.getToolTipText();
                if (str != null && !str.isEmpty()) {
                    component.setToolTipText(str + " " + mathModelInfo.getVersion().getVersionKey());
                }
                // we change color of version if it's in the Other folder (Uncurated) and belongs to login user
                Object pNode = node.getParent();
                if (pNode instanceof BioModelNode) {
                    pNode = ((BioModelNode) pNode).getParent();
                    if (pNode instanceof BioModelNode && ((BioModelNode) pNode).getUserObject() instanceof String) {
                        str = (String) ((BioModelNode) pNode).getUserObject();
                        pNode = ((BioModelNode) pNode).getParent();
                        if (((BioModelNode) pNode).getUserObject() instanceof String && str.equalsIgnoreCase(sessionUser.getName())) {
                            str = (String) ((BioModelNode) pNode).getUserObject();
                            if (str.equals(VCDocumentDbTreeModel.Other_MathModels)) {
                                // GRAY
                                String prefix = sel ? "" : "<span style=\"color:#808080\">";
                                String suffix = sel ? "" : "</span>";
                                String str1 = prefix + component.getText() + suffix;
                                setText("<html>" + str1 + "</html>");
                            }
                        }
                    }
                }
            } else if (userObject instanceof VCDocumentInfoNode) {
                VCDocumentInfoNode infonode = (VCDocumentInfoNode) userObject;
                User nodeUser = infonode.getVCDocumentInfo().getVersion().getOwner();
                String modelName = infonode.getVCDocumentInfo().getVersion().getName();
                String username = nodeUser.getName();
                if (username.equals(VCDocumentDbTreeModel.USER_tutorial)) // || username.equals(VCDocumentDbTreeModel.USER_Education)
                {
                    if (node.getParent() instanceof BioModelNode && ((BioModelNode) node.getParent()).getUserObject() instanceof String) {
                        String pName = (String) ((BioModelNode) node.getParent()).getUserObject();
                        if (pName.equals(VCDocumentDbTreeModel.Curated_MathModels)) {
                            // we add the user name to Curated
                            setText("<html><b>" + nodeUser.getName() + " </b> : " + modelName + "</html>");
                        } else {
                            // keep it simple for Education and Tutorial
                            component.setText(modelName);
                        }
                    } else {
                        component.setText(modelName);
                    }
                } else if (nodeUser.compareEqual(sessionUser)) {
                    Object pNode = node.getParent();
                    if (pNode instanceof BioModelNode) {
                        BioModelNode parent = (BioModelNode) pNode;
                        if (parent.getUserObject() instanceof String) {
                            // the Published, Curated and Other folders are the only
                            // ones where the parent user object is a String
                            String str = (String) parent.getUserObject();
                            if (str.equals(VCDocumentDbTreeModel.Published_MathModels) || str.equals(VCDocumentDbTreeModel.Curated_MathModels)) /*|| str.equals(VCDocumentDbTreeModel.Other_MathModels)*/
                            {
                                String prefix = sel ? "" : "<span style=\"color:#8B0000\">";
                                String suffix = sel ? "" : "</span>";
                                setText("<html><b>" + prefix + nodeUser.getName() + suffix + "</b>  : " + modelName + "</html>");
                            } else {
                                // in the Other folder / owner folder
                                // GRAY
                                String prefix = sel ? "" : "<span style=\"color:#808080\">";
                                String suffix = sel ? "" : "</span>";
                                String str1 = prefix + modelName + suffix;
                                if (node.getChildCount() > 1) {
                                    prefix = sel ? "" : "<span style=\"color:#8B0000\">";
                                    suffix = sel ? "" : "</span>";
                                    str1 += prefix + " (" + node.getChildCount() + ")" + suffix;
                                }
                                // the name of the model container - which holds the versions
                                setText("<html>" + str1 + "</html>");
                            }
                        } else if (parent.getUserObject() instanceof PublicationInfo) {
                            String prefix = sel ? "" : "<span style=\"color:#8B0000\">";
                            String suffix = sel ? "" : "</span>";
                            setText("<html><b>" + prefix + nodeUser.getName() + suffix + "</b>  : " + modelName + "</html>");
                        } else {
                            String str = modelName;
                            if (node.getChildCount() > 1) {
                                String prefix = sel ? "" : "<span style=\"color:#8B0000\">";
                                String suffix = sel ? "" : "</span>";
                                str += prefix + " (" + node.getChildCount() + ")" + suffix;
                            }
                            setText("<html>" + str + "</html>");
                        }
                    } else {
                        // unreachable
                        setText(modelName);
                    }
                } else {
                    Object pNode = node.getParent();
                    if (pNode instanceof UserNameNode) {
                        // if we are inside an UserName folder (like Shared or Uncurated public),
                        // don't prefix again the model with the user name
                        String str = modelName;
                        if (node.getChildCount() > 1) {
                            String prefix = sel ? "" : "<span style=\"color:#8B0000\">";
                            String suffix = sel ? "" : "</span>";
                            str += prefix + " (" + node.getChildCount() + ")" + suffix;
                        }
                        setText("<html>" + str + "</html>");
                    } else {
                        // content of "Published" folder
                        setText("<html><b>" + nodeUser.getName() + " </b> : " + modelName + "</html>");
                    }
                }
            }
        }
    } catch (Throwable e) {
        e.printStackTrace(System.out);
    }
    // 
    if (component.getToolTipText() == null || component.getToolTipText().length() == 0) {
        component.setToolTipText(component.getText());
    }
    return component;
}