Examples with And org.w3._2007.rif.And used on opensource projects

Example 1 with And

use of org.w3._2007.rif.And in project nhin-d by DirectProject.

the class DirectXdMailet method service.

/*
     * (non-Javadoc)
     * 
     * @see org.apache.mailet.base.GenericMailet#service(org.apache.mailet.Mail)
     */
@Override
public void service(Mail mail) throws MessagingException {
    LOGGER.info("Servicing DirectXdMailet");
    if (StringUtils.isBlank(endpointUrl)) {
        LOGGER.error("DirectXdMailet endpoint URL cannot be empty or null.");
        throw new MessagingException("DirectXdMailet endpoint URL cannot be empty or null.");
    }
    boolean successfulTransaction = false;
    final MimeMessage msg = mail.getMessage();
    final boolean isReliableAndTimely = TxUtil.isReliableAndTimelyRequested(msg);
    final NHINDAddressCollection initialRecipients = getMailRecipients(mail);
    final NHINDAddressCollection xdRecipients = new NHINDAddressCollection();
    final NHINDAddress sender = getMailSender(mail);
    Tx txToTrack = null;
    // Get recipients and create a collection of Strings
    final List<String> recipAddresses = new ArrayList<String>();
    for (NHINDAddress addr : initialRecipients) {
        recipAddresses.add(addr.getAddress());
    }
    // Service XD* addresses
    if (getResolver().hasXdEndpoints(recipAddresses)) {
        LOGGER.info("Recipients include XD endpoints");
        try {
            //List<Address> xdAddresses = new ArrayList<Address>();
            for (String s : getResolver().getXdEndpoints(recipAddresses)) {
                //xdAddresses.add((new MailAddress(s)).toInternetAddress());
                xdRecipients.add(new NHINDAddress(s));
            }
            txToTrack = this.getTxToTrack(msg, sender, xdRecipients);
            // Replace recipients with only XD* addresses
            //msg.setRecipients(RecipientType.TO, xdAddresses.toArray(new Address[0]));
            msg.setRecipients(RecipientType.TO, xdRecipients.toArray(new Address[0]));
            // Transform MimeMessage into ProvideAndRegisterDocumentSetRequestType object
            ProvideAndRegisterDocumentSetRequestType request = getMimeXDSTransformer().transform(msg);
            for (String directTo : recipAddresses) {
                String response = getDocumentRepository().forwardRequest(endpointUrl, request, directTo, sender.toString());
                if (!isSuccessful(response)) {
                    LOGGER.error("DirectXdMailet failed to deliver XD message.");
                    LOGGER.error(response);
                } else {
                    successfulTransaction = true;
                    if (isReliableAndTimely && txToTrack != null && txToTrack.getMsgType() == TxMessageType.IMF) {
                        // send MDN dispatch for messages the recipients that were successful
                        final Collection<NotificationMessage> notifications = notificationProducer.produce(new Message(msg), xdRecipients.toInternetAddressCollection());
                        if (notifications != null && notifications.size() > 0) {
                            LOGGER.debug("Sending MDN \"dispathed\" messages");
                            // create a message for each notification and put it on James "stack"
                            for (NotificationMessage message : notifications) {
                                try {
                                    getMailetContext().sendMail(message);
                                } catch (Throwable t) {
                                    // don't kill the process if this fails
                                    LOGGER.error("Error sending MDN dispatched message.", t);
                                }
                            }
                        }
                    }
                }
            }
        } catch (Throwable e) {
            LOGGER.error("DirectXdMailet delivery failure", e);
        }
    }
    // this basically sets the message back to it's original state with SMTP addresses only
    if (getResolver().hasSmtpEndpoints(recipAddresses)) {
        LOGGER.info("Recipients include SMTP endpoints");
        mail.setRecipients(getSmtpRecips(recipAddresses));
    } else {
        LOGGER.info("Recipients do not include SMTP endpoints");
        // No SMTP addresses, ghost it
        mail.setState(Mail.GHOST);
    }
    if (!successfulTransaction) {
        if (txToTrack != null && txToTrack.getMsgType() == TxMessageType.IMF) {
            // for good measure, send DSN messages back to the original sender on failure
            // create a DSN message
            this.sendDSN(txToTrack, xdRecipients, false);
        }
    }
}

Example 2 with And

use of org.w3._2007.rif.And in project camel by apache.

the class Soap12DataFormatAdapter method createExceptionFromFault.

/**
     * Creates an exception and eventually an embedded bean that contains the
     * fault detail. The exception class is determined by using the
     * elementNameStrategy. The qName of the fault detail should match the
     * WebFault annotation of the Exception class. If no fault detail is set
     * a {@link javax.xml.ws.soap.SOAPFaultException} is created.
     * 
     * @param fault Soap fault
     * @return created Exception
     */
private Exception createExceptionFromFault(Fault fault) {
    StringBuilder sb = new StringBuilder();
    for (Reasontext text : fault.getReason().getText()) {
        sb.append(text.getValue());
    }
    String message = sb.toString();
    Detail faultDetail = fault.getDetail();
    if (faultDetail == null || faultDetail.getAny().size() == 0) {
        try {
            return new SOAPFaultException(SOAPFactory.newInstance().createFault(message, fault.getCode().getValue()));
        } catch (SOAPException e) {
            throw new RuntimeCamelException(e);
        }
    }
    JAXBElement<?> detailEl = (JAXBElement<?>) faultDetail.getAny().get(0);
    Class<? extends Exception> exceptionClass = getDataFormat().getElementNameStrategy().findExceptionForFaultName(detailEl.getName());
    Constructor<? extends Exception> messageConstructor;
    Constructor<? extends Exception> constructor;
    try {
        messageConstructor = exceptionClass.getConstructor(String.class);
        Object detail = JAXBIntrospector.getValue(detailEl);
        try {
            constructor = exceptionClass.getConstructor(String.class, detail.getClass());
            return constructor.newInstance(message, detail);
        } catch (NoSuchMethodException e) {
            return messageConstructor.newInstance(message);
        }
    } catch (Exception e) {
        throw new RuntimeCamelException(e);
    }
}

Example 3 with And

use of org.w3._2007.rif.And in project airavata by apache.

the class BESJobSubmissionTask method execute.

@Override
public TaskStatus execute(TaskContext taskContext) {
    TaskStatus taskStatus = new TaskStatus(TaskState.CREATED);
    StorageClient sc = null;
    ProcessContext processContext = taskContext.getParentProcessContext();
    // FIXME - use original output dir
    setInputOutputLocations(processContext);
    try {
        // con't reuse if UserDN has been changed.
        secProperties = getSecurityConfig(processContext);
    // try secProperties = secProperties.clone() if we can't use already initialized ClientConfigurations.
    } catch (GFacException e) {
        String msg = "Unicorn security context initialization error";
        log.error(msg, e);
        taskStatus.setState(TaskState.FAILED);
        taskStatus.setReason(msg);
        return taskStatus;
    }
    try {
        JobSubmissionProtocol protocol = processContext.getJobSubmissionProtocol();
        JobSubmissionInterface jobSubmissionInterface = GFacUtils.getPreferredJobSubmissionInterface(processContext);
        String factoryUrl = null;
        if (protocol.equals(JobSubmissionProtocol.UNICORE)) {
            UnicoreJobSubmission unicoreJobSubmission = GFacUtils.getUnicoreJobSubmission(jobSubmissionInterface.getJobSubmissionInterfaceId());
            factoryUrl = unicoreJobSubmission.getUnicoreEndPointURL();
        }
        EndpointReferenceType eprt = EndpointReferenceType.Factory.newInstance();
        eprt.addNewAddress().setStringValue(factoryUrl);
        String userDN = processContext.getProcessModel().getUserDn();
        CreateActivityDocument cad = CreateActivityDocument.Factory.newInstance();
        // create storage
        StorageCreator storageCreator = new StorageCreator(secProperties, factoryUrl, 5, null);
        sc = storageCreator.createStorage();
        JobDefinitionType jobDefinition = JSDLGenerator.buildJSDLInstance(processContext, sc.getUrl()).getJobDefinition();
        cad.addNewCreateActivity().addNewActivityDocument().setJobDefinition(jobDefinition);
        log.info("Submitted JSDL: " + jobDefinition.getJobDescription());
        // copy files to local
        copyInputFilesToLocal(taskContext);
        // upload files if any
        DataTransferrer dt = new DataTransferrer(processContext, sc);
        dt.uploadLocalFiles();
        JobModel jobDetails = new JobModel();
        jobDetails.setTaskId(taskContext.getTaskId());
        jobDetails.setProcessId(taskContext.getProcessId());
        FactoryClient factory = new FactoryClient(eprt, secProperties);
        log.info("Activity Submitting to {} ... \n", factoryUrl);
        CreateActivityResponseDocument response = factory.createActivity(cad);
        log.info("Activity Submitted to {} ... \n", factoryUrl);
        EndpointReferenceType activityEpr = response.getCreateActivityResponse().getActivityIdentifier();
        log.info("Activity : " + activityEpr.getAddress().getStringValue() + " Submitted.");
        // factory.waitWhileActivityIsDone(activityEpr, 1000);
        jobId = WSUtilities.extractResourceID(activityEpr);
        if (jobId == null) {
            jobId = new Long(Calendar.getInstance().getTimeInMillis()).toString();
        }
        log.info("JobID: " + jobId);
        jobDetails.setJobId(jobId);
        jobDetails.setJobDescription(activityEpr.toString());
        jobDetails.setJobStatuses(Arrays.asList(new JobStatus(JobState.SUBMITTED)));
        processContext.setJobModel(jobDetails);
        GFacUtils.saveJobModel(processContext, jobDetails);
        GFacUtils.saveJobStatus(processContext, jobDetails);
        log.info(formatStatusMessage(activityEpr.getAddress().getStringValue(), factory.getActivityStatus(activityEpr).toString()));
        waitUntilDone(eprt, activityEpr, processContext, secProperties);
        ActivityStatusType activityStatus = null;
        activityStatus = getStatus(factory, activityEpr);
        log.info(formatStatusMessage(activityEpr.getAddress().getStringValue(), activityStatus.getState().toString()));
        ActivityClient activityClient;
        activityClient = new ActivityClient(activityEpr, secProperties);
        // now use the activity working directory property
        dt.setStorageClient(activityClient.getUspaceClient());
        List<OutputDataObjectType> copyOutput = null;
        if ((activityStatus.getState() == ActivityStateEnumeration.FAILED)) {
            String error = activityStatus.getFault().getFaultcode().getLocalPart() + "\n" + activityStatus.getFault().getFaultstring() + "\n EXITCODE: " + activityStatus.getExitCode();
            log.error(error);
            JobState applicationJobStatus = JobState.FAILED;
            jobDetails.setJobStatuses(Arrays.asList(new JobStatus(applicationJobStatus)));
            sendNotification(processContext, jobDetails);
            try {
                Thread.sleep(5000);
            } catch (InterruptedException e) {
            }
            // What if job is failed before execution and there are not stdouts generated yet?
            log.debug("Downloading any standard output and error files, if they were produced.");
            copyOutput = dt.downloadRemoteFiles();
        } else if (activityStatus.getState() == ActivityStateEnumeration.CANCELLED) {
            JobState applicationJobStatus = JobState.CANCELED;
            jobDetails.setJobStatuses(Arrays.asList(new JobStatus(applicationJobStatus)));
            GFacUtils.saveJobStatus(processContext, jobDetails);
            throw new GFacException(processContext.getExperimentId() + "Job Canceled");
        } else if (activityStatus.getState() == ActivityStateEnumeration.FINISHED) {
            try {
                Thread.sleep(5000);
            } catch (InterruptedException ignored) {
            }
            JobState applicationJobStatus = JobState.COMPLETE;
            jobDetails.setJobStatuses(Arrays.asList(new JobStatus(applicationJobStatus)));
            GFacUtils.saveJobStatus(processContext, jobDetails);
            log.info("Job Id: {}, exit code: {}, exit status: {}", jobDetails.getJobId(), activityStatus.getExitCode(), ActivityStateEnumeration.FINISHED.toString());
            // if (activityStatus.getExitCode() == 0) {
            // } else {
            // dt.downloadStdOuts();
            // }
            copyOutput = dt.downloadRemoteFiles();
        }
        if (copyOutput != null) {
            copyOutputFilesToStorage(taskContext, copyOutput);
            for (OutputDataObjectType outputDataObjectType : copyOutput) {
                GFacUtils.saveExperimentOutput(processContext, outputDataObjectType.getName(), outputDataObjectType.getValue());
            }
        }
        // dt.publishFinalOutputs();
        taskStatus.setState(TaskState.COMPLETED);
    } catch (AppCatalogException e) {
        log.error("Error while retrieving UNICORE job submission..", e);
        taskStatus.setState(TaskState.FAILED);
    } catch (Exception e) {
        log.error("BES task failed... ", e);
        taskStatus.setState(TaskState.FAILED);
    }
    return taskStatus;
}

Example 4 with And

use of org.w3._2007.rif.And in project webcert by sklintyg.

the class FragaSvarServiceImpl method getFragaSvar.

@Override
@Transactional(value = "jpaTransactionManager", readOnly = true)
public List<FragaSvarView> getFragaSvar(String intygId) {
    List<FragaSvar> fragaSvarList = fragaSvarRepository.findByIntygsReferensIntygsId(intygId);
    WebCertUser user = webCertUserService.getUser();
    validateSekretessmarkering(intygId, fragaSvarList, user);
    List<String> hsaEnhetIds = user.getIdsOfSelectedVardenhet();
    // Filter questions to that current user only sees questions issued to
    // units with active employment role
    fragaSvarList.removeIf(fragaSvar -> fragaSvar.getVardperson() != null && !hsaEnhetIds.contains(fragaSvar.getVardperson().getEnhetsId()));
    // Finally sort by senasteHandelseDatum
    // We do the sorting in code, since we need to sort on a derived
    // property and not a direct entity persisted
    // property in which case we could have used an order by in the query.
    fragaSvarList.sort(SENASTE_HANDELSE_DATUM_COMPARATOR);
    List<ArendeDraft> drafts = arendeDraftService.listAnswerDrafts(intygId);
    List<AnsweredWithIntyg> bmi = AnsweredWithIntygUtil.findAllKomplementForGivenIntyg(intygId, utkastRepository);
    List<FragaSvarView> fragaSvarWithBesvaratMedIntygInfo = fragaSvarList.stream().map(fs -> FragaSvarView.create(fs, fs.getFrageSkickadDatum() == null ? null : AnsweredWithIntygUtil.returnOldestKompltOlderThan(fs.getFrageSkickadDatum(), bmi), drafts.stream().filter(d -> Long.toString(fs.getInternReferens()).equals(d.getQuestionId())).findAny().map(ArendeDraft::getText).orElse(null))).collect(Collectors.toList());
    return fragaSvarWithBesvaratMedIntygInfo;
}

Example 5 with And

use of org.w3._2007.rif.And in project hale by halestudio.

the class TestModelRifToRifTranslator method checkAndChildren.

private void checkAndChildren(And and) {
    assertNotNull(and.getFormula());
    assertTrue(and.getFormula().size() >= 1);
    for (Formula formula : and.getFormula()) {
        if (formula.getMember() != null) {
            checkMemberElement(formula.getMember());
        } else if (formula.getFrame() != null) {
        // checkPropertyFrame(formula.getFrame());
        }
    }
}