Examples with Labeling sc.fiji.labkit.ui.labeling.Labeling used on opensource projects

Example 21 with Labeling

use of sc.fiji.labkit.ui.labeling.Labeling in project labkit-ui by juglab.

the class AddLabelingIoAction method openAdditional.

private void openAdditional(Void ignore, String filename) throws IOException {
    Labeling newLabeling = serializer.open(filename);
    extendLabeling(labeling.get(), newLabeling);
    labeling.notifier().notifyListeners();
}

Example 22 with Labeling

use of sc.fiji.labkit.ui.labeling.Labeling in project labkit-ui by juglab.

the class InitialLabeling method askShrinkInterval.

private static Interval askShrinkInterval(Interval interval) {
    if (interval.numDimensions() != 2)
        return interval;
    if (!consideredBig(interval))
        return interval;
    interval = new FinalInterval(interval);
    List<Interval> suggestions = new ArrayList<>();
    suggestions.add(interval);
    while (consideredBig(interval)) {
        interval = shrink(interval);
        suggestions.add(interval);
    }
    List<String> texts = suggestions.stream().map(i -> i.dimension(0) + "x" + i.dimension(1)).collect(Collectors.toList());
    Object selected = JOptionPane.showInputDialog(null, "Select resultion of the labeling", "Labekit", JOptionPane.PLAIN_MESSAGE, null, texts.toArray(), texts.get(texts.size() - 1));
    int index = texts.indexOf(selected);
    return (index >= 0) ? suggestions.get(index) : interval;
}

Example 23 with Labeling

use of sc.fiji.labkit.ui.labeling.Labeling in project labkit-ui by juglab.

the class InitialLabeling method defaultLabeling.

private static Labeling defaultLabeling(InputImage inputImage, List<String> defaultLabels) {
    ImgPlus<?> image = inputImage.imageForSegmentation();
    Interval bigInterval = new FinalInterval(ImgPlusViewsOld.hyperSlice(image, Axes.CHANNEL, 0));
    Interval smallInterval = askShrinkInterval(bigInterval);
    int scaling = getIntegerScale(smallInterval, bigInterval).getAsInt();
    Labeling labeling = Labeling.createEmpty(defaultLabels, smallInterval);
    labeling.setAxes(scaledAxes(scaling, filterChannelAxis(ImgPlusViewsOld.getCalibratedAxes(image))));
    return labeling;
}

Example 24 with Labeling

use of sc.fiji.labkit.ui.labeling.Labeling in project labkit-ui by juglab.

the class ColoredLabelsModel method addLabel.

public void addLabel() {
    Holder<Labeling> holder = model.labeling();
    Labeling labeling = holder.get();
    String newName = suggestName(labeling.getLabels().stream().map(Label::name).collect(Collectors.toList()));
    if (newName == null)
        return;
    Label newLabel = labeling.addLabel(newName);
    model.selectedLabel().set(newLabel);
    fireLabelsChanged();
}

Example 25 with Labeling

use of sc.fiji.labkit.ui.labeling.Labeling in project labkit-ui by juglab.

the class BitmapImportExportAction method exportLabel.

private void exportLabel(Label label, String filename) throws IOException {
    Labeling labeling = model.labeling().get();
    RandomAccessibleInterval<BitType> bitmap = labeling.getRegion(label);
    Dataset dataset = datasetService.create(toUnsignedByteType(bitmap));
    datasetIOService.save(dataset, filename);
}