Examples with Labeling sc.fiji.labkit.ui.labeling.Labeling used on opensource projects

Example 16 with Labeling

use of sc.fiji.labkit.ui.labeling.Labeling in project labkit-ui by juglab.

the class TrainableSegmentationSegmenterTest method initLabeling.

private Labeling initLabeling() {
    Labeling labeling = Labeling.createEmpty(Arrays.asList("a", "b"), new FinalInterval(2, 1, 2));
    RandomAccess<LabelingType<Label>> ra = labeling.randomAccess();
    ra.setPosition(new long[] { 0, 0, 0 });
    ra.get().add(labeling.getLabel("a"));
    ra.setPosition(new long[] { 1, 0, 0 });
    ra.get().add(labeling.getLabel("b"));
    return labeling;
}

Example 17 with Labeling

use of sc.fiji.labkit.ui.labeling.Labeling in project labkit-ui by juglab.

the class SegmentationUseCaseTest method addLabels.

private void addLabels(ImageLabelingModel imageLabelingModel) {
    Labeling labeling = imageLabelingModel.labeling().get();
    RandomAccess<LabelingType<Label>> ra = labeling.randomAccess();
    ra.setPosition(new long[] { 0, 0 });
    ra.get().add(labeling.getLabel("foreground"));
    ra.setPosition(new long[] { 0, 1 });
    ra.get().add(labeling.getLabel("background"));
}

Example 18 with Labeling

use of sc.fiji.labkit.ui.labeling.Labeling in project labkit-ui by juglab.

the class SegmentationUseCaseTest method getLabeling.

private Labeling getLabeling() {
    List<String> labels = Arrays.asList("b", "f");
    Interval interval = new FinalInterval(2, 2);
    Labeling labeling = Labeling.createEmpty(labels, interval);
    RandomAccess<LabelingType<Label>> ra = labeling.randomAccess();
    ra.setPosition(new long[] { 0, 0 });
    ra.get().add(labeling.getLabel("f"));
    ra.setPosition(new long[] { 1, 0 });
    ra.get().add(labeling.getLabel("b"));
    ra.setPosition(new long[] { 0, 1 });
    ra.get().add(labeling.getLabel("b"));
    ra.setPosition(new long[] { 1, 1 });
    ra.get().add(labeling.getLabel("b"));
    return labeling;
}

Example 19 with Labeling

use of sc.fiji.labkit.ui.labeling.Labeling in project labkit-ui by juglab.

the class FloodFillTest method test3.

@Test
public void test3() {
    Labeling labeling = Labeling.fromImgLabeling(exampleImgLabeling());
    final Point seed = new Point(2, 2);
    Label a = labeling.getLabel("a");
    Label b = labeling.getLabel("b");
    Label c = labeling.getLabel("c");
    c.setVisible(false);
    Label ab = labeling.addLabel("ab");
    final Consumer<Set<Label>> operation = l -> l.add(ab);
    FloodFill.doFloodFillOnActiveLabels((RandomAccessibleInterval) labeling, seed, operation);
    assertLabelEqualsInterval(labeling, intervalA, a);
    assertLabelEqualsInterval(labeling, intervalB, b);
    assertLabelEqualsInterval(labeling, intervalC, c);
    assertLabelEqualsInterval(labeling, intervalAintersectB, ab);
}

Example 20 with Labeling

use of sc.fiji.labkit.ui.labeling.Labeling in project labkit-ui by juglab.

the class LabeledImage method snapshot.

/**
 * Returns an up to date {@link ImageLabelingModel}. But doesn't guarantee for
 * changes to be tracked, or to keep the reference.
 */
public ImageLabelingModel snapshot() {
    if (imageLabelingModel != null)
        return imageLabelingModel;
    DatasetInputImage inputImage = openInputImage();
    inputImage.setDefaultLabelingFilename(modifiedLabelingFile);
    Labeling labeling = openOrEmptyLabeling(storedIn.get(), inputImage.imageForSegmentation());
    ImageLabelingModel imageLabelingModel = new ImageLabelingModel(inputImage);
    imageLabelingModel.labeling().set(labeling);
    return imageLabelingModel;
}