Examples with RunPartitionService uk.ac.bbsrc.tgac.miso.core.service.RunPartitionService used on opensource projects

Example 1 with RunPartitionService

use of uk.ac.bbsrc.tgac.miso.core.service.RunPartitionService in project miso-lims by miso-lims.

the class RunRestController method setQc.

@PostMapping(value = "/{runId}/qc", produces = "application/json")
@ResponseStatus(code = HttpStatus.NO_CONTENT)
public void setQc(@PathVariable Long runId, @RequestBody RunPartitionQCRequest request) throws IOException {
    Run run = RestUtils.retrieve("Run", runId, runService);
    PartitionQCType qcType = partitionQcTypeService.list().stream().filter(qt -> qt.getId() == request.getQcTypeId().longValue()).findAny().orElseThrow(() -> new RestException(String.format("No partition QC type found with ID: %d", request.getQcTypeId()), Status.BAD_REQUEST));
    // 
    run.getSequencerPartitionContainers().stream().flatMap(// 
    container -> container.getPartitions().stream()).filter(// 
    partition -> request.partitionIds.contains(partition.getId())).map(WhineyFunction.rethrow(partition -> {
        RunPartition runPartition = runPartitionService.get(run, partition);
        if (runPartition == null) {
            runPartition = new RunPartition();
            runPartition.setRunId(run.getId());
            runPartition.setPartitionId(partition.getId());
        }
        runPartition.setQcType(qcType);
        runPartition.setNotes(request.notes);
        return runPartition;
    })).forEach(WhineyConsumer.rethrow(runPartitionService::save));
}