Examples with RunPurposeService uk.ac.bbsrc.tgac.miso.core.service.RunPurposeService used on opensource projects

Example 1 with RunPurposeService

use of uk.ac.bbsrc.tgac.miso.core.service.RunPurposeService in project miso-lims by miso-lims.

the class RunRestController method setPartitionPurposes.

@PutMapping("/{runId}/partition-purposes")
@ResponseStatus(HttpStatus.NO_CONTENT)
public void setPartitionPurposes(@PathVariable long runId, @RequestBody RunPartitionPurposeRequest request) throws IOException {
    Run run = RestUtils.retrieve("Run", runId, runService);
    RunPurpose purpose = RestUtils.retrieve("Run purpose", request.getRunPurposeId(), runPurposeService);
    List<Partition> partitions = run.getSequencerPartitionContainers().stream().flatMap(container -> container.getPartitions().stream()).filter(partition -> request.getPartitionIds().contains(partition.getId())).collect(Collectors.toList());
    for (Partition partition : partitions) {
        RunPartition runPartition = runPartitionService.get(run, partition);
        if (runPartition == null) {
            runPartition = new RunPartition();
            runPartition.setRunId(run.getId());
            runPartition.setPartitionId(partition.getId());
        }
        runPartition.setPurpose(purpose);
        runPartitionService.save(runPartition);
    }
}

Example 2 with RunPurposeService

use of uk.ac.bbsrc.tgac.miso.core.service.RunPurposeService in project miso-lims by miso-lims.

the class SequencingOrderRestController method search.

@GetMapping(value = "/sequencingorders/search")
@ResponseBody
public List<SequencingOrderDto> search(@RequestParam long poolId, @RequestParam long purposeId, @RequestParam(required = false) Long containerModelId, @RequestParam long parametersId, @RequestParam int partitions) throws IOException {
    Pool pool = getOrThrow(poolService, poolId, "Pool");
    RunPurpose purpose = getOrThrow(runPurposeService, purposeId, "Run purpose");
    SequencingContainerModel containerModel = containerModelId == null ? null : getOrThrow(containerModelService, containerModelId, "Container model");
    SequencingParameters parameters = getOrThrow(sequencingParametersService, parametersId, "Sequencing parameters");
    List<SequencingOrder> results = sequencingOrderService.listByAttributes(pool, purpose, containerModel, parameters, partitions);
    return results.stream().map(so -> Dtos.asDto(so, indexChecker)).collect(Collectors.toList());
}