Examples with Message ca.uhn.hl7v2.model.Message used on opensource projects

Example 36 with Message

use of ca.uhn.hl7v2.model.Message in project tdi-studio-se by Talend.

the class HL7PublicUtil method getChildren.

public Set getChildren(Object parentElement) {
    // List values = new ArrayList();
    Set values = new HashSet();
    if (parentElement instanceof Message) {
        Message messParent = (Message) parentElement;
        String[] childNames = messParent.getNames();
        if (!values.isEmpty()) {
            values.clear();
        }
        for (int i = 0; i < childNames.length; i++) {
            try {
                Structure[] childReps = messParent.getAll(childNames[i]);
                for (int j = 0; j < childReps.length; j++) {
                    if (childReps[j] instanceof Message) {
                        values.add(childReps[j]);
                        if (getChildren(childReps[j]).size() > 0) {
                            values.addAll(getChildren(childReps[j]));
                        }
                    }
                    if (childReps[j] instanceof Group) {
                        values.add(childReps[j]);
                        allSegmentFromGroup.clear();
                        getAllSegmentsFromGroup((Group) childReps[j]);
                    }
                    if (childReps[j] instanceof Segment) {
                        SegmentModel sModel = new SegmentModel((Segment) childReps[j], messParent, i, j);
                        if (sModel.getTypes() != null && sModel.getTypes().length > 0) {
                            values.add(sModel);
                            if (getChildren(sModel).size() > 0) {
                                values.addAll(getChildren(sModel));
                            }
                            if (!allSegmentsForMessage.contains(sModel)) {
                                allSegmentsForMessage.add(sModel);
                            }
                        }
                    }
                }
            // values.addAll(Arrays.asList(childReps));
            } catch (HL7Exception e) {
                e.printStackTrace();
            }
        }
        return values;
    }
    if (parentElement instanceof Segment) {
        values.clear();
        Segment segment = (Segment) parentElement;
        SegmentModel sm = new SegmentModel(segment, segment, 0, 0);
        TypeModel[] models = sm.getTypes();
        for (TypeModel model : models) {
            values.add(model);
            if (getChildren(model).size() > 0) {
                values.addAll(getChildren(model));
            }
        }
        return values;
    }
    if (parentElement instanceof SegmentModel) {
        SegmentModel sm = (SegmentModel) parentElement;
        TypeModel[] models = sm.getTypes();
        for (TypeModel model : models) {
            values.add(model);
            if (getChildren(model).size() > 0) {
                values.addAll(getChildren(model));
            }
        }
        return values;
    }
    if (parentElement instanceof TypeModel) {
        TypeModel tm = (TypeModel) parentElement;
        PrimitiveModel[] models = tm.getPrimitives();
        for (PrimitiveModel model : models) {
            values.add(model);
            if (getChildren(model).size() > 0) {
                values.addAll(getChildren(model));
            }
        }
        return values;
    // return tm.getPrimitives();
    }
    if (parentElement instanceof Group) {
        values.clear();
        Group group = (Group) parentElement;
        String[] childNames = group.getNames();
        for (int i = 0; i < childNames.length; i++) {
            try {
                Structure[] childReps = group.getAll(childNames[i]);
                for (int j = 0; j < childReps.length; j++) {
                    if (childReps[j] instanceof Segment) {
                        SegmentModel sm = new SegmentModel((Segment) childReps[j], group, i, j);
                        if (sm.getTypes() != null && sm.getTypes().length > 0) {
                            values.add(sm);
                            if (getChildren(sm).size() > 0) {
                                values.addAll(getChildren(sm));
                            }
                        }
                    } else {
                        values.add(childReps[j]);
                        if (getChildren(childReps[j]).size() > 0) {
                            values.addAll(getChildren(childReps[j]));
                        }
                    }
                }
            // values.addAll(Arrays.asList(childReps));
            } catch (HL7Exception e) {
                e.printStackTrace();
            }
        }
        return values;
    }
    return values;
}

Example 37 with Message

use of ca.uhn.hl7v2.model.Message in project streamsx.health by IBMStreams.

the class AdtToModelMapper method messageToModel.

@SuppressWarnings("unchecked")
public <T> Iterable<T> messageToModel(Message message) {
    ArrayList<ADTEvent> adtEvents = new ArrayList<ADTEvent>();
    if (message instanceof ADT_AXX) {
        ADT_AXX superMsg = (ADT_AXX) message;
        MessageInfo msg = new MessageInfo();
        Patient patient = new Patient();
        try {
            MSH header = superMsg.getMSH();
            msg.setSendingApp(header.getSendingApplication().encode());
            msg.setSendingFacility(header.getSendingFacility().encode());
            msg.setReceivingApp(header.getReceivingApplication().encode());
            msg.setReceivingFacility(header.getReceivingFacility().encode());
            msg.setMessageTs(header.getDateTimeOfMessage().encode());
            msg.setMessageType(header.getMessageType().encode());
            PID pid = superMsg.getPID();
            patient.setId(pid.getPatientID().encode());
            XPN[] patientNames = pid.getPatientName();
            for (XPN name : patientNames) {
                if (patient.getName().equals(IInjestServicesConstants.EMPTYSTR)) {
                    patient.setName(getPatientFullName(name));
                } else {
                    patient.addAlternateName(getPatientFullName(name));
                }
            }
            patient.setGender(pid.getAdministrativeSex().encode());
            patient.setDateOfBirth(pid.getDateTimeOfBirth().encode());
            CX[] ids = pid.getAlternatePatientIDPID();
            if (ids.length > 0) {
                for (CX cx : ids) {
                    patient.addAlternativeId(cx.encode());
                }
            }
            EventDetails evt = new EventDetails();
            EVN evn = superMsg.getEVN();
            evt.setEventType(evn.getEventTypeCode().encode());
            evt.setEventTs(evn.getEvn6_EventOccurred().encode());
            evt.setRecordTs(evn.getEvn2_RecordedDateTime().encode());
            PV1 pv1 = superMsg.getPV1();
            PatientVisit patientVisit = new PatientVisit();
            patientVisit.setPatientClass(pv1.getPatientClass().encode());
            patientVisit.setLocation(pv1.getAssignedPatientLocation().encode());
            patientVisit.setPriorLocation(pv1.getPriorPatientLocation().encode());
            patientVisit.setVisitNumber(pv1.getVisitNumber().encode());
            patient.setStatus(pv1.getBedStatus().encode());
            XCN[] doctors = pv1.getAttendingDoctor();
            for (XCN xcn : doctors) {
                String id = xcn.getIDNumber().encode();
                String name = xcn.getFamilyName().encode() + " " + xcn.getGivenName().encode();
                Clinician clinician = new Clinician();
                clinician.setId(id);
                clinician.setName(name);
                patientVisit.addAttendingDoctor(clinician);
            }
            doctors = pv1.getConsultingDoctor();
            for (XCN xcn : doctors) {
                String id = xcn.getIDNumber().encode();
                String name = xcn.getFamilyName().encode() + " " + xcn.getGivenName().encode();
                Clinician clinician = new Clinician();
                clinician.setId(id);
                clinician.setName(name);
                patientVisit.addConsultingDoctor(clinician);
            }
            ADTEvent adtEvent = new ADTEvent();
            adtEvent.setEvt(evt);
            adtEvent.setPatient(patient);
            adtEvent.setMsg(msg);
            adtEvent.setPv(patientVisit);
            adtEvents.add(adtEvent);
        } catch (HL7Exception e) {
            TRACE.error("Unable to parse HL7 message", e);
        }
    }
    return (Iterable<T>) adtEvents;
}

Example 38 with Message

use of ca.uhn.hl7v2.model.Message in project streamsx.health by IBMStreams.

the class ObxToSplMapper method messageToModel.

@SuppressWarnings("unchecked")
public <T> Iterable<T> messageToModel(Message message) {
    ArrayList<Observation> observations = new ArrayList<Observation>();
    if (message instanceof ORU_R01) {
        ORU_R01 oruMsg = (ORU_R01) message;
        String obxTs = "";
        String obxLocation = "";
        String sendingApp = "";
        String sendingFacility = "";
        try {
            MSH msh = oruMsg.getMSH();
            sendingApp = msh.getSendingApplication().encode();
            sendingFacility = msh.getSendingFacility().encode();
            List<ORU_R01_PATIENT_RESULT> patient_RESULTAll = ((ORU_R01) message).getPATIENT_RESULTAll();
            for (ORU_R01_PATIENT_RESULT result : patient_RESULTAll) {
                ORU_R01_ORDER_OBSERVATION order_OBSERVATION = result.getORDER_OBSERVATION();
                OBR obr = order_OBSERVATION.getOBR();
                DTM ts = obr.getObservationDateTime();
                obxTs = ts.getValue();
                ORU_R01_PATIENT patient = result.getPATIENT();
                ORU_R01_VISIT visit = patient.getVISIT();
                PL location = visit.getPV1().getAssignedPatientLocation();
                obxLocation = location.encode();
                List<ORU_R01_OBSERVATION> observationAll = order_OBSERVATION.getOBSERVATIONAll();
                for (ORU_R01_OBSERVATION oru_R01_OBSERVATION : observationAll) {
                    parseOBX(observations, obxTs, obxLocation, oru_R01_OBSERVATION.getOBX(), sendingApp, sendingFacility);
                }
            }
        } catch (HL7Exception e) {
            if (TRACE.isDebugEnabled())
                TRACE.log(TraceLevel.WARN, e);
        }
        try {
            OBR obr = (OBR) oruMsg.get("OBR");
            DTM ts = obr.getObservationDateTime();
            obxTs = ts.getValue();
            Structure tmp = oruMsg.get("PV1");
            if (tmp != null) {
                PV1 pv1 = (PV1) tmp;
                PL location = pv1.getAssignedPatientLocation();
                obxLocation = location.encode();
            }
            Structure[] structures = oruMsg.getAll("OBX");
            for (Structure structure : structures) {
                parseOBX(observations, obxTs, obxLocation, (OBX) structure, sendingApp, sendingFacility);
            }
        } catch (HL7Exception e) {
            if (TRACE.isDebugEnabled())
                TRACE.log(TraceLevel.WARN, e);
        }
    }
    return (Iterable<T>) observations;
}

Example 39 with Message

use of ca.uhn.hl7v2.model.Message in project streamsx.health by IBMStreams.

the class AdtIngest method run.

@Override
public void run() {
    Topology topology = new Topology("AdtIngest");
    AdtToModelMapper mapper = new AdtToModelMapper();
    addDependencies(topology);
    HapiMessageSupplier supplier = new HapiMessageSupplier(getPort());
    supplier.setMessageClass(ADT_AXX.class);
    TStream<Message> messages = topology.endlessSource(supplier);
    // transform message to ADTEvent object
    TStream<ADTEvent> adtEvents = messages.multiTransform(message -> {
        return mapper.messageToModel(message);
    });
    // publish data as JSON
    PublishAdtEvent.publish(adtEvents, getTopic());
    try {
        StreamsContextFactory.getStreamsContext(StreamsContext.Type.DISTRIBUTED).submit(topology);
    } catch (Exception e) {
        TRACE.error("Unable to submit topology", e);
    }
}

Example 40 with Message

use of ca.uhn.hl7v2.model.Message in project camel by apache.

the class AckExpression method evaluate.

@Override
public Object evaluate(Exchange exchange) {
    Throwable t = exchange.getProperty(Exchange.EXCEPTION_CAUGHT, Throwable.class);
    Message msg = exchange.getIn().getBody(Message.class);
    try {
        HL7Exception hl7e = generateHL7Exception(t);
        AcknowledgmentCode code = acknowledgementCode;
        if (t != null && code == null) {
            code = AcknowledgmentCode.AE;
        }
        return msg.generateACK(code == null ? AcknowledgmentCode.AA : code, hl7e);
    } catch (Exception e) {
        throw ObjectHelper.wrapRuntimeCamelException(e);
    }
}