Examples with IS ca.uhn.hl7v2.model.v25.datatype.IS used on opensource projects

Example 1 with IS

use of ca.uhn.hl7v2.model.v25.datatype.IS in project camel by apache.

the class HL7DataFormatTest method testUnmarshalWithImplicitBig5Charset.

@Test
public void testUnmarshalWithImplicitBig5Charset() throws Exception {
    String charset = "Big5";
    MockEndpoint mock = getMockEndpoint("mock:unmarshalBig5");
    mock.expectedMessageCount(1);
    mock.message(0).body().isInstanceOf(Message.class);
    mock.expectedHeaderReceived(HL7Constants.HL7_CHARSET, null);
    mock.expectedHeaderReceived(Exchange.CHARSET_NAME, charset);
    // Message without explicit encoding in MSH-18, but the unmarshaller "guesses"
    // this time that it is Big5
    byte[] body = createHL7AsString().getBytes(Charset.forName(charset));
    template.sendBody("direct:unmarshalBig5", new ByteArrayInputStream(body));
    assertMockEndpointsSatisfied();
    Message msg = mock.getExchanges().get(0).getIn().getBody(Message.class);
    assertEquals("2.4", msg.getVersion());
    QRD qrd = (QRD) msg.get("QRD");
    assertEquals("0101701234", qrd.getWhoSubjectFilter(0).getIDNumber().getValue());
}

Example 2 with IS

use of ca.uhn.hl7v2.model.v25.datatype.IS in project openmrs-core by openmrs.

the class ORUR01Handler method createEncounter.

/**
 * This method does not call the database to create the encounter row. The encounter is only
 * created after all obs have been attached to it Creates an encounter pojo to be attached
 * later. This method does not create an encounterId
 *
 * @param msh
 * @param patient
 * @param pv1
 * @param orc
 * @return
 * @throws HL7Exception
 */
private Encounter createEncounter(MSH msh, Patient patient, PV1 pv1, ORC orc) throws HL7Exception {
    // the encounter we will return
    Encounter encounter;
    // look for the encounter id in PV1-19
    CX visitNumber = pv1.getVisitNumber();
    Integer encounterId = null;
    try {
        encounterId = Integer.valueOf(visitNumber.getIDNumber().getValue());
    } catch (NumberFormatException e) {
    // pass
    }
    // the database
    if (encounterId != null) {
        encounter = Context.getEncounterService().getEncounter(encounterId);
    } else {
        // if no encounter_id was passed in, this is a new
        // encounter, create the object
        encounter = new Encounter();
        Date encounterDate = getEncounterDate(pv1);
        Provider provider = getProvider(pv1);
        Location location = getLocation(pv1);
        Form form = getForm(msh);
        EncounterType encounterType = getEncounterType(msh, form);
        User enterer = getEnterer(orc);
        // Date dateEntered = getDateEntered(orc); // ignore this since we have no place in the data model to store it
        encounter.setEncounterDatetime(encounterDate);
        if (unknownRole == null) {
            unknownRole = Context.getEncounterService().getEncounterRoleByUuid(EncounterRole.UNKNOWN_ENCOUNTER_ROLE_UUID);
        }
        encounter.setProvider(unknownRole, provider);
        encounter.setPatient(patient);
        encounter.setLocation(location);
        encounter.setForm(form);
        encounter.setEncounterType(encounterType);
        encounter.setCreator(enterer);
        encounter.setDateCreated(new Date());
    }
    return encounter;
}

Example 3 with IS

use of ca.uhn.hl7v2.model.v25.datatype.IS in project openmrs-core by openmrs.

the class HL7ServiceImpl method resolveLocationId.

/**
 * @param pl HL7 component of data type PL (person location) (see Ch 2.A.53)
 * @return internal identifier of the specified location, or null if it is not found or
 *         ambiguous
 */
@Override
@Transactional(readOnly = true)
public Integer resolveLocationId(PL pl) throws HL7Exception {
    // TODO: Get rid of hack that allows first component to be an integer
    // location.location_id
    String pointOfCare = pl.getPointOfCare().getValue();
    String facility = pl.getFacility().getUniversalID().getValue();
    // Care" as an internal openmrs location_id
    try {
        Integer locationId = Integer.valueOf(pointOfCare);
        Location l = Context.getLocationService().getLocation(locationId);
        if (l != null) {
            return l.getLocationId();
        }
    } catch (Exception ex) {
        if (facility == null) {
            // throw an exception
            throw new HL7Exception("Error trying to treat PL.pointOfCare '" + pointOfCare + "' as a location.location_id", ex);
        }
    }
    // Treat the 4th component "Facility" as location.name
    try {
        Location l = Context.getLocationService().getLocation(facility);
        if (l == null) {
            log.debug("Couldn't find a location named '" + facility + "'");
        }
        return l == null ? null : l.getLocationId();
    } catch (Exception ex) {
        log.error("Error trying to treat PL.facility '" + facility + "' as a location.name", ex);
        return null;
    }
}

Example 4 with IS

use of ca.uhn.hl7v2.model.v25.datatype.IS in project openmrs-core by openmrs.

the class HL7ServiceImpl method resolvePersonFromIdentifiers.

/**
 * @param identifiers CX identifier list from an identifier (either PID or NK1)
 * @return The internal id number of the Patient based on one of the given identifiers, or null
 *         if the patient is not found
 * @throws HL7Exception
 */
@Override
@Transactional(readOnly = true)
public Person resolvePersonFromIdentifiers(CX[] identifiers) throws HL7Exception {
    // give up if no identifiers exist
    if (identifiers.length < 1) {
        throw new HL7Exception("Missing patient identifier in PID segment");
    }
    // Take the first uniquely matching identifier
    for (CX identifier : identifiers) {
        String hl7PersonId = identifier.getIDNumber().getValue();
        // TODO if 1st component is blank, check 2nd and 3rd of assigning
        // authority
        String assigningAuthority = identifier.getAssigningAuthority().getNamespaceID().getValue();
        if (StringUtils.isNotBlank(assigningAuthority)) {
            // Assigning authority defined
            try {
                PatientIdentifierType pit = Context.getPatientService().getPatientIdentifierTypeByName(assigningAuthority);
                if (pit == null) {
                    // there is no matching PatientIdentifierType
                    if (assigningAuthority.equals(HL7Constants.HL7_AUTHORITY_UUID)) {
                        // the identifier is a UUID
                        Person p = Context.getPersonService().getPersonByUuid(hl7PersonId);
                        if (p != null) {
                            return p;
                        }
                        log.warn("Can't find person for UUID '" + hl7PersonId + "'");
                        // skip identifiers with unknown type
                        continue;
                    } else if (assigningAuthority.equals(HL7Constants.HL7_AUTHORITY_LOCAL)) {
                        // the ID is internal (local)
                        String idType = identifier.getIdentifierTypeCode().getValue();
                        try {
                            if (idType.equals(HL7Constants.HL7_ID_PERSON)) {
                                Integer pid = Integer.parseInt(hl7PersonId);
                                // patient_id == person_id, so just look for
                                // the person
                                Person p = Context.getPersonService().getPerson(pid);
                                if (p != null) {
                                    return p;
                                }
                            } else if (idType.equals(HL7Constants.HL7_ID_PATIENT)) {
                                Integer pid = Integer.parseInt(hl7PersonId);
                                // patient_id == person_id, so just look for
                                // the person
                                Patient p = Context.getPatientService().getPatient(pid);
                                if (p != null) {
                                    return p;
                                }
                            }
                        } catch (NumberFormatException e) {
                        }
                        log.warn("Can't find Local identifier of '" + hl7PersonId + "'");
                        // skip identifiers with unknown type
                        continue;
                    }
                    log.warn("Can't find PatientIdentifierType named '" + assigningAuthority + "'");
                    // skip identifiers with unknown type
                    continue;
                }
                List<PatientIdentifier> matchingIds = Context.getPatientService().getPatientIdentifiers(hl7PersonId, Collections.singletonList(pit), null, null, null);
                if (matchingIds == null || matchingIds.isEmpty()) {
                    // no matches
                    log.warn("NO matches found for " + hl7PersonId);
                    // try next identifier
                    continue;
                } else if (matchingIds.size() == 1) {
                    // unique match -- we're done
                    return matchingIds.get(0).getPatient();
                } else {
                    // ambiguous identifier
                    log.debug("Ambiguous identifier in PID. " + matchingIds.size() + " matches for identifier '" + hl7PersonId + "' of type '" + pit + "'");
                    // try next identifier
                    continue;
                }
            } catch (Exception e) {
                log.error("Error resolving patient identifier '" + hl7PersonId + "' for assigning authority '" + assigningAuthority + "'", e);
                continue;
            }
        } else {
            try {
                log.debug("CX contains ID '" + hl7PersonId + "' without assigning authority -- assuming patient.patient_id");
                return Context.getPatientService().getPatient(Integer.parseInt(hl7PersonId));
            } catch (NumberFormatException e) {
                log.warn("Invalid patient ID '" + hl7PersonId + "'");
            }
        }
    }
    return null;
}

Example 5 with IS

use of ca.uhn.hl7v2.model.v25.datatype.IS in project openmrs-core by openmrs.

the class HL7ServiceImpl method createPersonFromNK1.

/**
 * @see org.openmrs.hl7.HL7Service#createPersonFromNK1(ca.uhn.hl7v2.model.v25.segment.NK1)
 */
@Override
public Person createPersonFromNK1(NK1 nk1) throws HL7Exception {
    // NOTE: following block (with minor modifications) stolen from
    // ADTA28Handler
    // TODO: generalize this for use with both PID and NK1 segments
    Person person = new Person();
    // UUID
    CX[] identifiers = nk1.getNextOfKinAssociatedPartySIdentifiers();
    String uuid = getUuidFromIdentifiers(identifiers);
    if (Context.getPersonService().getPersonByUuid(uuid) != null) {
        throw new HL7Exception("Non-unique UUID '" + uuid + "' for new person");
    }
    person.setUuid(uuid);
    // Patient Identifiers
    List<PatientIdentifier> goodIdentifiers = new ArrayList<>();
    for (CX id : identifiers) {
        String assigningAuthority = id.getAssigningAuthority().getNamespaceID().getValue();
        String hl7PatientId = id.getIDNumber().getValue();
        log.debug("identifier has id=" + hl7PatientId + " assigningAuthority=" + assigningAuthority);
        if (assigningAuthority != null && assigningAuthority.length() > 0) {
            try {
                PatientIdentifierType pit = Context.getPatientService().getPatientIdentifierTypeByName(assigningAuthority);
                if (pit == null) {
                    if (!"UUID".equals(assigningAuthority)) {
                        log.warn("Can't find PatientIdentifierType named '" + assigningAuthority + "'");
                    }
                    // skip identifiers with unknown type
                    continue;
                }
                PatientIdentifier pi = new PatientIdentifier();
                pi.setIdentifierType(pit);
                pi.setIdentifier(hl7PatientId);
                // Get default location
                Location location = Context.getLocationService().getDefaultLocation();
                if (location == null) {
                    throw new HL7Exception("Cannot find default location");
                }
                pi.setLocation(location);
                try {
                    PatientIdentifierValidator.validateIdentifier(pi);
                    goodIdentifiers.add(pi);
                } catch (PatientIdentifierException ex) {
                    log.warn("Patient identifier in NK1 is invalid: " + pi, ex);
                }
            } catch (Exception e) {
                log.error("Uncaught error parsing/creating patient identifier '" + hl7PatientId + "' for assigning authority '" + assigningAuthority + "'", e);
            }
        } else {
            log.debug("NK1 contains identifier with no assigning authority");
            continue;
        }
    }
    if (!goodIdentifiers.isEmpty()) {
        // If we have one identifier, set it as the preferred to make the validator happy.
        if (goodIdentifiers.size() == 1) {
            goodIdentifiers.get(0).setPreferred(true);
        }
        // cast the person as a Patient and add identifiers
        person = new Patient(person);
        ((Patient) person).addIdentifiers(goodIdentifiers);
    }
    // Person names
    for (XPN patientNameX : nk1.getNKName()) {
        PersonName name = new PersonName();
        name.setFamilyName(patientNameX.getFamilyName().getSurname().getValue());
        name.setGivenName(patientNameX.getGivenName().getValue());
        name.setMiddleName(patientNameX.getSecondAndFurtherGivenNamesOrInitialsThereof().getValue());
        person.addName(name);
    }
    // Gender (checks for null, but not for 'M' or 'F')
    String gender = nk1.getAdministrativeSex().getValue();
    if (gender == null) {
        throw new HL7Exception("Missing gender in an NK1 segment");
    }
    gender = gender.toUpperCase();
    if (!OpenmrsConstants.GENDER().containsKey(gender)) {
        throw new HL7Exception("Unrecognized gender: " + gender);
    }
    person.setGender(gender);
    // Date of Birth
    TS dateOfBirth = nk1.getDateTimeOfBirth();
    if (dateOfBirth == null || dateOfBirth.getTime() == null || dateOfBirth.getTime().getValue() == null) {
        throw new HL7Exception("Missing birth date in an NK1 segment");
    }
    person.setBirthdate(HL7Util.parseHL7Timestamp(dateOfBirth.getTime().getValue()));
    // Estimated birthdate?
    ID precisionTemp = dateOfBirth.getDegreeOfPrecision();
    if (precisionTemp != null && precisionTemp.getValue() != null) {
        String precision = precisionTemp.getValue().toUpperCase();
        log.debug("The birthdate is estimated: " + precision);
        if ("Y".equals(precision) || "L".equals(precision)) {
            person.setBirthdateEstimated(true);
        }
    }
    // save the new person or patient
    if (person instanceof Patient) {
        Context.getPatientService().savePatient((Patient) person);
    } else {
        Context.getPersonService().savePerson(person);
    }
    return person;
}