Examples with MSH ca.uhn.hl7v2.model.v26.segment.MSH used on opensource projects

Example 11 with MSH

use of ca.uhn.hl7v2.model.v26.segment.MSH in project camel by apache.

the class HL7RouteTest method createADT01Message.

private static Message createADT01Message(String msgId) throws Exception {
    ADT_A01 adt = new ADT_A01();
    // Populate the MSH Segment
    MSH mshSegment = adt.getMSH();
    mshSegment.getFieldSeparator().setValue("|");
    mshSegment.getEncodingCharacters().setValue("^~\\&");
    mshSegment.getDateTimeOfMessage().getTimeOfAnEvent().setValue("200701011539");
    mshSegment.getSendingApplication().getNamespaceID().setValue("MYSENDER");
    mshSegment.getSequenceNumber().setValue("123");
    mshSegment.getMessageType().getMessageType().setValue("ADT");
    mshSegment.getMessageType().getTriggerEvent().setValue("A01");
    // Populate the PID Segment
    PID pid = adt.getPID();
    pid.getPatientName(0).getFamilyName().getSurname().setValue("Doe");
    pid.getPatientName(0).getGivenName().setValue("John");
    pid.getPatientIdentifierList(0).getID().setValue(msgId);
    return adt;
}

Example 12 with MSH

use of ca.uhn.hl7v2.model.v26.segment.MSH in project camel by apache.

the class HL7XmlDataFormatTest method testUnmarshalOkXml.

@Test
public void testUnmarshalOkXml() throws Exception {
    MockEndpoint mock = getMockEndpoint("mock:unmarshal");
    mock.expectedMessageCount(1);
    String body = createHL7AsString();
    Message msg = hl7.getParser().parse(body);
    String xml = hl7.getParser().encode(msg, "XML");
    assertTrue(xml.contains("<ORM_O01"));
    template.sendBody("direct:unmarshalOkXml", xml);
    assertMockEndpointsSatisfied();
    Message received = mock.getReceivedExchanges().get(0).getIn().getMandatoryBody(Message.class);
    assertEquals("O01", new Terser(received).get("MSH-9-2"));
}

Example 13 with MSH

use of ca.uhn.hl7v2.model.v26.segment.MSH in project streamsx.health by IBMStreams.

the class AdtToModelMapper method messageToModel.

@SuppressWarnings("unchecked")
public <T> Iterable<T> messageToModel(Message message) {
    ArrayList<ADTEvent> adtEvents = new ArrayList<ADTEvent>();
    if (message instanceof ADT_AXX) {
        ADT_AXX superMsg = (ADT_AXX) message;
        MessageInfo msg = new MessageInfo();
        Patient patient = new Patient();
        try {
            MSH header = superMsg.getMSH();
            msg.setSendingApp(header.getSendingApplication().encode());
            msg.setSendingFacility(header.getSendingFacility().encode());
            msg.setReceivingApp(header.getReceivingApplication().encode());
            msg.setReceivingFacility(header.getReceivingFacility().encode());
            msg.setMessageTs(header.getDateTimeOfMessage().encode());
            msg.setMessageType(header.getMessageType().encode());
            PID pid = superMsg.getPID();
            patient.setId(pid.getPatientID().encode());
            XPN[] patientNames = pid.getPatientName();
            for (XPN name : patientNames) {
                if (patient.getName().equals(IInjestServicesConstants.EMPTYSTR)) {
                    patient.setName(getPatientFullName(name));
                } else {
                    patient.addAlternateName(getPatientFullName(name));
                }
            }
            patient.setGender(pid.getAdministrativeSex().encode());
            patient.setDateOfBirth(pid.getDateTimeOfBirth().encode());
            CX[] ids = pid.getAlternatePatientIDPID();
            if (ids.length > 0) {
                for (CX cx : ids) {
                    patient.addAlternativeId(cx.encode());
                }
            }
            EventDetails evt = new EventDetails();
            EVN evn = superMsg.getEVN();
            evt.setEventType(evn.getEventTypeCode().encode());
            evt.setEventTs(evn.getEvn6_EventOccurred().encode());
            evt.setRecordTs(evn.getEvn2_RecordedDateTime().encode());
            PV1 pv1 = superMsg.getPV1();
            PatientVisit patientVisit = new PatientVisit();
            patientVisit.setPatientClass(pv1.getPatientClass().encode());
            patientVisit.setLocation(pv1.getAssignedPatientLocation().encode());
            patientVisit.setPriorLocation(pv1.getPriorPatientLocation().encode());
            patientVisit.setVisitNumber(pv1.getVisitNumber().encode());
            patient.setStatus(pv1.getBedStatus().encode());
            XCN[] doctors = pv1.getAttendingDoctor();
            for (XCN xcn : doctors) {
                String id = xcn.getIDNumber().encode();
                String name = xcn.getFamilyName().encode() + " " + xcn.getGivenName().encode();
                Clinician clinician = new Clinician();
                clinician.setId(id);
                clinician.setName(name);
                patientVisit.addAttendingDoctor(clinician);
            }
            doctors = pv1.getConsultingDoctor();
            for (XCN xcn : doctors) {
                String id = xcn.getIDNumber().encode();
                String name = xcn.getFamilyName().encode() + " " + xcn.getGivenName().encode();
                Clinician clinician = new Clinician();
                clinician.setId(id);
                clinician.setName(name);
                patientVisit.addConsultingDoctor(clinician);
            }
            ADTEvent adtEvent = new ADTEvent();
            adtEvent.setEvt(evt);
            adtEvent.setPatient(patient);
            adtEvent.setMsg(msg);
            adtEvent.setPv(patientVisit);
            adtEvents.add(adtEvent);
        } catch (HL7Exception e) {
            TRACE.error("Unable to parse HL7 message", e);
        }
    }
    return (Iterable<T>) adtEvents;
}

Example 14 with MSH

use of ca.uhn.hl7v2.model.v26.segment.MSH in project streamsx.health by IBMStreams.

the class ObxToSplMapper method messageToModel.

@SuppressWarnings("unchecked")
public <T> Iterable<T> messageToModel(Message message) {
    ArrayList<Observation> observations = new ArrayList<Observation>();
    if (message instanceof ORU_R01) {
        ORU_R01 oruMsg = (ORU_R01) message;
        String obxTs = "";
        String obxLocation = "";
        String sendingApp = "";
        String sendingFacility = "";
        try {
            MSH msh = oruMsg.getMSH();
            sendingApp = msh.getSendingApplication().encode();
            sendingFacility = msh.getSendingFacility().encode();
            List<ORU_R01_PATIENT_RESULT> patient_RESULTAll = ((ORU_R01) message).getPATIENT_RESULTAll();
            for (ORU_R01_PATIENT_RESULT result : patient_RESULTAll) {
                ORU_R01_ORDER_OBSERVATION order_OBSERVATION = result.getORDER_OBSERVATION();
                OBR obr = order_OBSERVATION.getOBR();
                DTM ts = obr.getObservationDateTime();
                obxTs = ts.getValue();
                ORU_R01_PATIENT patient = result.getPATIENT();
                ORU_R01_VISIT visit = patient.getVISIT();
                PL location = visit.getPV1().getAssignedPatientLocation();
                obxLocation = location.encode();
                List<ORU_R01_OBSERVATION> observationAll = order_OBSERVATION.getOBSERVATIONAll();
                for (ORU_R01_OBSERVATION oru_R01_OBSERVATION : observationAll) {
                    parseOBX(observations, obxTs, obxLocation, oru_R01_OBSERVATION.getOBX(), sendingApp, sendingFacility);
                }
            }
        } catch (HL7Exception e) {
            if (TRACE.isDebugEnabled())
                TRACE.log(TraceLevel.WARN, e);
        }
        try {
            OBR obr = (OBR) oruMsg.get("OBR");
            DTM ts = obr.getObservationDateTime();
            obxTs = ts.getValue();
            Structure tmp = oruMsg.get("PV1");
            if (tmp != null) {
                PV1 pv1 = (PV1) tmp;
                PL location = pv1.getAssignedPatientLocation();
                obxLocation = location.encode();
            }
            Structure[] structures = oruMsg.getAll("OBX");
            for (Structure structure : structures) {
                parseOBX(observations, obxTs, obxLocation, (OBX) structure, sendingApp, sendingFacility);
            }
        } catch (HL7Exception e) {
            if (TRACE.isDebugEnabled())
                TRACE.log(TraceLevel.WARN, e);
        }
    }
    return (Iterable<T>) observations;
}

Example 15 with MSH

use of ca.uhn.hl7v2.model.v26.segment.MSH in project camel by apache.

the class HL7DataFormat method unmarshal.

public Object unmarshal(Exchange exchange, InputStream inputStream) throws Exception {
    byte[] body = ExchangeHelper.convertToMandatoryType(exchange, byte[].class, inputStream);
    String charsetName = HL7Charset.getCharsetName(body, guessCharsetName(body, exchange));
    String bodyAsString = new String(body, charsetName);
    Message message = HL7Converter.parse(bodyAsString, parser);
    // add MSH fields as message out headers
    Terser terser = new Terser(message);
    for (Map.Entry<String, String> entry : HEADER_MAP.entrySet()) {
        exchange.getOut().setHeader(entry.getKey(), terser.get(entry.getValue()));
    }
    exchange.getOut().setHeader(HL7_CONTEXT, hapiContext);
    exchange.getOut().setHeader(Exchange.CHARSET_NAME, charsetName);
    return message;
}