use of com.google.api.services.storagetransfer.v1.model.Operation in project java-docs-samples by GoogleCloudPlatform.
the class DicomStoreExport method dicomStoreExport.
public static void dicomStoreExport(String dicomStoreName, String gcsUri) throws IOException {
// String dicomStoreName =
// String.format(
// DICOM_NAME, "your-project-id", "your-region-id", "your-dataset-id", "your-dicom-id");
// String gcsUri = "gs://your-bucket-id/path/to/destination/dir"
// Initialize the client, which will be used to interact with the service.
CloudHealthcare client = createClient();
// Configure where the store will be exported too.
GoogleCloudHealthcareV1DicomGcsDestination gcsDestination = new GoogleCloudHealthcareV1DicomGcsDestination().setUriPrefix(gcsUri);
ExportDicomDataRequest exportRequest = new ExportDicomDataRequest().setGcsDestination(gcsDestination);
// Create request and configure any parameters.
DicomStores.Export request = client.projects().locations().datasets().dicomStores().export(dicomStoreName, exportRequest);
// Execute the request, wait for the operation to complete, and process the results.
try {
Operation operation = request.execute();
while (operation.getDone() == null || !operation.getDone()) {
// Update the status of the operation with another request.
// Pause for 500ms between requests.
Thread.sleep(500);
operation = client.projects().locations().datasets().operations().get(operation.getName()).execute();
}
System.out.println("DICOM store export complete." + operation.getResponse());
} catch (Exception ex) {
System.out.printf("Error during request execution: %s", ex.toString());
ex.printStackTrace(System.out);
}
}
use of com.google.api.services.storagetransfer.v1.model.Operation in project java-docs-samples by GoogleCloudPlatform.
the class FhirStoreImport method fhirStoreImport.
public static void fhirStoreImport(String fhirStoreName, String gcsUri) throws IOException {
// String fhirStoreName =
// String.format(
// FHIR_NAME, "your-project-id", "your-region-id", "your-dataset-id", "your-fhir-id");
// String gcsUri = "gs://your-bucket-id/path/to/destination/dir"
// Initialize the client, which will be used to interact with the service.
CloudHealthcare client = createClient();
// Configure where the store should be imported from.
GoogleCloudHealthcareV1FhirGcsSource gcsSource = new GoogleCloudHealthcareV1FhirGcsSource().setUri(gcsUri);
ImportResourcesRequest importRequest = new ImportResourcesRequest().setGcsSource(gcsSource);
// Create request and configure any parameters.
FhirStores.CloudHealthcareImport request = client.projects().locations().datasets().fhirStores().healthcareImport(fhirStoreName, importRequest);
// Execute the request, wait for the operation to complete, and process the results.
try {
Operation operation = request.execute();
while (operation.getDone() == null || !operation.getDone()) {
// Update the status of the operation with another request.
// Pause for 500ms between requests.
Thread.sleep(500);
operation = client.projects().locations().datasets().operations().get(operation.getName()).execute();
}
System.out.println("FHIR store import complete: " + operation.getResponse());
} catch (Exception ex) {
System.out.printf("Error during request execution: %s", ex.toString());
ex.printStackTrace(System.out);
}
}
use of com.google.api.services.storagetransfer.v1.model.Operation in project java-docs-samples by GoogleCloudPlatform.
the class DatasetDeIdentify method datasetDeIdentify.
public static void datasetDeIdentify(String srcDatasetName, String destDatasetName) throws IOException {
// String srcDatasetName =
// String.format(DATASET_NAME, "your-project-id", "your-region-id", "your-src-dataset-id");
// String destDatasetName =
// String.format(DATASET_NAME, "your-project-id", "your-region-id", "your-dest-dataset-id");
// Initialize the client, which will be used to interact with the service.
CloudHealthcare client = createClient();
// Configure what information needs to be De-Identified.
// For more information on de-identifying using tags, please see the following:
// https://cloud.google.com/healthcare/docs/how-tos/dicom-deidentify#de-identification_using_tags
TagFilterList tags = new TagFilterList().setTags(Arrays.asList("PatientID"));
DicomConfig dicomConfig = new DicomConfig().setKeepList(tags);
DeidentifyConfig config = new DeidentifyConfig().setDicom(dicomConfig);
// Create the de-identify request and configure any parameters.
DeidentifyDatasetRequest deidentifyRequest = new DeidentifyDatasetRequest().setDestinationDataset(destDatasetName).setConfig(config);
Datasets.Deidentify request = client.projects().locations().datasets().deidentify(srcDatasetName, deidentifyRequest);
// Execute the request, wait for the operation to complete, and process the results.
try {
Operation operation = request.execute();
while (operation.getDone() == null || !operation.getDone()) {
// Update the status of the operation with another request.
// Pause for 500ms between requests.
Thread.sleep(500);
operation = client.projects().locations().datasets().operations().get(operation.getName()).execute();
}
System.out.println("De-identified Dataset created. Response content: " + operation.getResponse());
} catch (Exception ex) {
System.out.printf("Error during request execution: %s", ex.toString());
ex.printStackTrace(System.out);
}
}
use of com.google.api.services.storagetransfer.v1.model.Operation in project FAAAST-Service by FraunhoferIOSB.
the class InvokeOperationAsyncRequestHandler method executeOperationAsync.
public OperationHandle executeOperationAsync(Reference reference, InvokeOperationAsyncRequest request) {
if (assetConnectionManager.hasOperationProvider(reference)) {
OperationHandle operationHandle = this.persistence.putOperationContext(null, request.getRequestId(), new OperationResult.Builder().requestId(request.getRequestId()).inoutputArguments(request.getInoutputArguments()).executionState(ExecutionState.Running).build());
BiConsumer<OperationVariable[], OperationVariable[]> callback = (x, y) -> {
OperationResult operationResult = persistence.getOperationResult(operationHandle.getHandleId());
operationResult.setExecutionState(ExecutionState.Completed);
operationResult.setOutputArguments(Arrays.asList(x));
operationResult.setInoutputArguments(Arrays.asList(y));
persistence.putOperationContext(operationHandle.getHandleId(), operationHandle.getRequestId(), operationResult);
publishOperationFinishEventMessage(reference, toValues(Arrays.asList(x)), toValues(Arrays.asList(y)));
};
AssetOperationProvider assetOperationProvider = assetConnectionManager.getOperationProvider(reference);
try {
assetOperationProvider.invokeAsync(request.getInputArguments().toArray(new OperationVariable[0]), request.getInoutputArguments().toArray(new OperationVariable[0]), callback);
} catch (AssetConnectionException ex) {
OperationResult operationResult = persistence.getOperationResult(operationHandle.getHandleId());
operationResult.setExecutionState(ExecutionState.Failed);
operationResult.setInoutputArguments(request.getInoutputArguments());
persistence.putOperationContext(operationHandle.getHandleId(), operationHandle.getRequestId(), operationResult);
publishOperationFinishEventMessage(reference, List.of(), toValues(operationResult.getInoutputArguments()));
}
return operationHandle;
} else {
throw new RuntimeException("No assetconnection available for running operation with request id" + request.getRequestId());
}
}
use of com.google.api.services.storagetransfer.v1.model.Operation in project FAAAST-Service by FraunhoferIOSB.
the class InvokeOperationAsyncRequestHandler method process.
@Override
public InvokeOperationAsyncResponse process(InvokeOperationAsyncRequest request) {
InvokeOperationAsyncResponse response = new InvokeOperationAsyncResponse();
try {
Reference reference = ReferenceHelper.toReference(request.getPath(), request.getId(), Submodel.class);
// Check if submodelelement does exist
Operation operation = (Operation) persistence.get(reference, new OutputModifier());
OperationHandle operationHandle = executeOperationAsync(reference, request);
response.setPayload(operationHandle);
response.setStatusCode(StatusCode.Success);
publishOperationInvokeEventMessage(reference, toValues(request.getInputArguments()), toValues(request.getInoutputArguments()));
} catch (ResourceNotFoundException ex) {
response.setStatusCode(StatusCode.ClientErrorResourceNotFound);
} catch (Exception ex) {
response.setStatusCode(StatusCode.ServerInternalError);
}
return response;
}
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